HEADER OXIDOREDUCTASE 17-NOV-16 5MFA TITLE CRYSTAL STRUCTURE OF HUMAN PROMYELOPEROXIDASE (PROMPO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MPO; COMPND 5 EC: 1.11.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPO; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS MYELOPEROXIDASE, PROMPO, BIOSYNTHESIS, PROTEOLYTIC MATURATION, HALIDE KEYWDS 2 OXIDATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.GRISHKOVSKAYA,P.G.FURTMUELLER,C.OBINGER,K.DJINOVIC-CARUGO REVDAT 4 17-JAN-24 5MFA 1 HETSYN LINK REVDAT 3 29-JUL-20 5MFA 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 31-MAY-17 5MFA 1 JRNL REVDAT 1 05-APR-17 5MFA 0 JRNL AUTH I.GRISHKOVSKAYA,M.PAUMANN-PAGE,R.TSCHELIESSNIG,J.STAMPLER, JRNL AUTH 2 S.HOFBAUER,M.SOUDI,B.SEVCNIKAR,C.OOSTENBRINK,P.G.FURTMULLER, JRNL AUTH 3 K.DJINOVIC-CARUGO,W.M.NAUSEEF,C.OBINGER JRNL TITL STRUCTURE OF HUMAN PROMYELOPEROXIDASE (PROMPO) AND THE ROLE JRNL TITL 2 OF THE PROPEPTIDE IN PROCESSING AND MATURATION. JRNL REF J. BIOL. CHEM. V. 292 8244 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28348079 JRNL DOI 10.1074/JBC.M117.775031 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 225654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 11276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7155 - 3.7280 1.00 8027 456 0.1291 0.1386 REMARK 3 2 3.7280 - 2.9592 1.00 7969 435 0.1299 0.1451 REMARK 3 3 2.9592 - 2.5852 1.00 7954 417 0.1204 0.1421 REMARK 3 4 2.5852 - 2.3488 1.00 7970 413 0.1097 0.1323 REMARK 3 5 2.3488 - 2.1805 1.00 7923 410 0.1044 0.1241 REMARK 3 6 2.1805 - 2.0519 1.00 7886 448 0.1083 0.1286 REMARK 3 7 2.0519 - 1.9492 1.00 7938 407 0.1082 0.1209 REMARK 3 8 1.9492 - 1.8643 1.00 7982 371 0.1076 0.1335 REMARK 3 9 1.8643 - 1.7925 1.00 7908 422 0.1046 0.1208 REMARK 3 10 1.7925 - 1.7307 1.00 7949 401 0.0989 0.1227 REMARK 3 11 1.7307 - 1.6766 1.00 7936 450 0.0964 0.1237 REMARK 3 12 1.6766 - 1.6286 1.00 7869 419 0.0962 0.1167 REMARK 3 13 1.6286 - 1.5858 1.00 7916 426 0.0952 0.1208 REMARK 3 14 1.5858 - 1.5471 1.00 7929 411 0.0950 0.1243 REMARK 3 15 1.5471 - 1.5119 1.00 7914 406 0.1032 0.1373 REMARK 3 16 1.5119 - 1.4797 1.00 7900 458 0.1096 0.1336 REMARK 3 17 1.4797 - 1.4501 1.00 7864 423 0.1191 0.1542 REMARK 3 18 1.4501 - 1.4228 1.00 7903 440 0.1265 0.1508 REMARK 3 19 1.4228 - 1.3973 1.00 7887 406 0.1337 0.1671 REMARK 3 20 1.3973 - 1.3737 1.00 7923 417 0.1433 0.1745 REMARK 3 21 1.3737 - 1.3515 0.99 7761 432 0.1550 0.1855 REMARK 3 22 1.3515 - 1.3307 0.94 7436 396 0.1743 0.2125 REMARK 3 23 1.3307 - 1.3111 0.89 7008 359 0.1882 0.2116 REMARK 3 24 1.3111 - 1.2927 0.82 6553 300 0.2095 0.2440 REMARK 3 25 1.2927 - 1.2752 0.74 5897 334 0.2299 0.2525 REMARK 3 26 1.2752 - 1.2586 0.67 5315 290 0.2424 0.2815 REMARK 3 27 1.2586 - 1.2429 0.60 4735 235 0.2653 0.2832 REMARK 3 28 1.2429 - 1.2279 0.53 4218 184 0.2940 0.3041 REMARK 3 29 1.2279 - 1.2136 0.46 3727 153 0.3073 0.3379 REMARK 3 30 1.2136 - 1.2000 0.40 3181 157 0.3285 0.3103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5383 REMARK 3 ANGLE : 1.145 7324 REMARK 3 CHIRALITY : 0.086 791 REMARK 3 PLANARITY : 0.008 956 REMARK 3 DIHEDRAL : 14.565 2140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 225738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 1.20400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG20000, 20% PEG MME 550, 0.1 REMARK 280 MM TRIS-BICINE, PH 8.5, 0.05 MM CACL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.07600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.07600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 932 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 ALA A 52 REMARK 465 VAL A 53 REMARK 465 LEU A 54 REMARK 465 GLY A 55 REMARK 465 GLU A 56 REMARK 465 VAL A 57 REMARK 465 ASP A 58 REMARK 465 THR A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 VAL A 62 REMARK 465 LEU A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 MET A 66 REMARK 465 GLU A 67 REMARK 465 GLU A 68 REMARK 465 ALA A 69 REMARK 465 LYS A 70 REMARK 465 GLN A 71 REMARK 465 LEU A 72 REMARK 465 VAL A 73 REMARK 465 ASP A 74 REMARK 465 LYS A 75 REMARK 465 ALA A 76 REMARK 465 TYR A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 ARG A 80 REMARK 465 ARG A 81 REMARK 465 GLU A 82 REMARK 465 SER A 83 REMARK 465 ILE A 84 REMARK 465 LYS A 85 REMARK 465 GLN A 86 REMARK 465 ARG A 87 REMARK 465 LEU A 88 REMARK 465 ARG A 89 REMARK 465 SER A 90 REMARK 465 GLY A 91 REMARK 465 SER A 92 REMARK 465 ALA A 93 REMARK 465 SER A 94 REMARK 465 PRO A 95 REMARK 465 MET A 96 REMARK 465 GLU A 97 REMARK 465 LEU A 98 REMARK 465 LEU A 99 REMARK 465 SER A 100 REMARK 465 TYR A 101 REMARK 465 PHE A 102 REMARK 465 LYS A 103 REMARK 465 GLN A 104 REMARK 465 PRO A 105 REMARK 465 VAL A 106 REMARK 465 ALA A 107 REMARK 465 ALA A 108 REMARK 465 THR A 109 REMARK 465 ARG A 110 REMARK 465 THR A 111 REMARK 465 ALA A 112 REMARK 465 VAL A 113 REMARK 465 ARG A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ASP A 117 REMARK 465 TYR A 118 REMARK 465 LEU A 119 REMARK 465 HIS A 120 REMARK 465 VAL A 121 REMARK 465 ALA A 122 REMARK 465 LEU A 123 REMARK 465 ASP A 124 REMARK 465 LEU A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 LEU A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 LEU A 133 REMARK 465 TRP A 134 REMARK 465 ARG A 135 REMARK 465 ARG A 136 REMARK 465 PRO A 137 REMARK 465 PHE A 138 REMARK 465 ASN A 139 REMARK 465 VAL A 140 REMARK 465 THR A 141 REMARK 465 ASP A 142 REMARK 465 VAL A 143 REMARK 465 LEU A 144 REMARK 465 THR A 145 REMARK 465 PRO A 146 REMARK 465 ALA A 147 REMARK 465 GLN A 148 REMARK 465 LEU A 149 REMARK 465 ASN A 150 REMARK 465 VAL A 151 REMARK 465 LEU A 152 REMARK 465 SER A 153 REMARK 465 LYS A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 SER A 745 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 260 HMDA HEM A 812 0.71 REMARK 500 OE2 GLU A 408 HMBA HEM A 812 0.76 REMARK 500 O1 PEG A 820 O1 PEG A 821 1.26 REMARK 500 O1 PEG A 819 O1 PEG A 822 1.26 REMARK 500 HD1 HIS A 502 HD21 ASN A 587 1.34 REMARK 500 CG ASP A 260 HMDA HEM A 812 1.57 REMARK 500 OE2 GLU A 408 HMB HEM A 812 1.58 REMARK 500 OD2 ASP A 260 CMD HEM A 812 1.58 REMARK 500 O1 PEG A 820 C1 PEG A 821 1.87 REMARK 500 O HOH A 959 O HOH A 1594 1.93 REMARK 500 O6 BMA D 3 C2 MAN D 5 1.97 REMARK 500 O HOH A 913 O HOH A 1494 1.98 REMARK 500 O HOH A 1193 O HOH A 1432 1.99 REMARK 500 OE1 GLU A 408 O HOH A 901 2.00 REMARK 500 O HOH A 1055 O HOH A 1520 2.00 REMARK 500 O HOH A 1447 O HOH A 1517 2.02 REMARK 500 O HOH A 1103 O HOH A 1528 2.04 REMARK 500 C6 BMA D 3 C1 MAN D 5 2.08 REMARK 500 O HOH A 901 O HOH A 1010 2.08 REMARK 500 O HOH A 1225 O HOH A 1410 2.08 REMARK 500 O ASN A 721 O HOH A 902 2.10 REMARK 500 O HOH A 902 O HOH A 921 2.10 REMARK 500 O HOH A 927 O HOH A 1544 2.11 REMARK 500 O1 PEG A 819 C1 PEG A 822 2.12 REMARK 500 O HOH A 944 O HOH A 1258 2.12 REMARK 500 ND2 ASN A 721 O HOH A 903 2.13 REMARK 500 OE2 GLU A 429 O HOH A 904 2.13 REMARK 500 C1 PEG A 819 O1 PEG A 822 2.15 REMARK 500 O HOH A 1241 O HOH A 1575 2.16 REMARK 500 O7 NAG D 2 O HOH A 905 2.16 REMARK 500 O HOH A 1032 O HOH A 1516 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1423 O HOH A 1566 2455 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 207 -48.08 -134.79 REMARK 500 PHE A 207 -43.39 -132.19 REMARK 500 SER A 208 -19.91 -162.05 REMARK 500 SER A 208 -19.91 -158.05 REMARK 500 THR A 390 -78.10 -79.23 REMARK 500 ARG A 499 5.73 -69.87 REMARK 500 ASN A 623 94.10 -167.02 REMARK 500 ASN A 716 81.42 38.89 REMARK 500 ASN A 721 5.90 -159.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 715 ASN A 716 -125.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1663 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1664 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1665 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1666 DISTANCE = 6.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 813 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 O REMARK 620 2 ASP A 262 OD1 74.7 REMARK 620 3 THR A 334 O 75.8 147.6 REMARK 620 4 THR A 334 OG1 134.3 143.2 68.9 REMARK 620 5 PHE A 336 O 107.2 83.4 92.8 102.7 REMARK 620 6 ASP A 338 OD1 146.5 73.3 137.6 72.5 78.8 REMARK 620 7 SER A 340 OG 82.9 79.2 110.0 82.8 156.9 81.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 812 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 502 NE2 REMARK 620 2 HEM A 812 NA 109.5 REMARK 620 3 HEM A 812 NB 103.6 85.2 REMARK 620 4 HEM A 812 NC 99.5 151.0 86.6 REMARK 620 5 HEM A 812 ND 105.3 86.8 151.1 87.1 REMARK 620 N 1 2 3 4 DBREF 5MFA A 49 745 UNP P05164 PERM_HUMAN 49 745 SEQRES 1 A 697 ALA ALA PRO ALA VAL LEU GLY GLU VAL ASP THR SER LEU SEQRES 2 A 697 VAL LEU SER SER MET GLU GLU ALA LYS GLN LEU VAL ASP SEQRES 3 A 697 LYS ALA TYR LYS GLU ARG ARG GLU SER ILE LYS GLN ARG SEQRES 4 A 697 LEU ARG SER GLY SER ALA SER PRO MET GLU LEU LEU SER SEQRES 5 A 697 TYR PHE LYS GLN PRO VAL ALA ALA THR ARG THR ALA VAL SEQRES 6 A 697 ARG ALA ALA ASP TYR LEU HIS VAL ALA LEU ASP LEU LEU SEQRES 7 A 697 GLU ARG LYS LEU ARG SER LEU TRP ARG ARG PRO PHE ASN SEQRES 8 A 697 VAL THR ASP VAL LEU THR PRO ALA GLN LEU ASN VAL LEU SEQRES 9 A 697 SER LYS SER SER GLY CYS ALA TYR GLN ASP VAL GLY VAL SEQRES 10 A 697 THR CYS PRO GLU GLN ASP LYS TYR ARG THR ILE THR GLY SEQRES 11 A 697 MET CYS ASN ASN ARG ARG SER PRO THR LEU GLY ALA SER SEQRES 12 A 697 ASN ARG ALA PHE VAL ARG TRP LEU PRO ALA GLU TYR GLU SEQRES 13 A 697 ASP GLY PHE SER LEU PRO TYR GLY TRP THR PRO GLY VAL SEQRES 14 A 697 LYS ARG ASN GLY PHE PRO VAL ALA LEU ALA ARG ALA VAL SEQRES 15 A 697 SER ASN GLU ILE VAL ARG PHE PRO THR ASP GLN LEU THR SEQRES 16 A 697 PRO ASP GLN GLU ARG SER LEU MET PHE MET GLN TRP GLY SEQRES 17 A 697 GLN LEU LEU ASP HIS ASP LEU ASP PHE THR PRO GLU PRO SEQRES 18 A 697 ALA ALA ARG ALA SER PHE VAL THR GLY VAL ASN CYS GLU SEQRES 19 A 697 THR SER CYS VAL GLN GLN PRO PRO CYS PHE PRO LEU LYS SEQRES 20 A 697 ILE PRO PRO ASN ASP PRO ARG ILE LYS ASN GLN ALA ASP SEQRES 21 A 697 CYS ILE PRO PHE PHE ARG SER CSO PRO ALA CYS PRO GLY SEQRES 22 A 697 SER ASN ILE THR ILE ARG ASN GLN ILE ASN ALA LEU THR SEQRES 23 A 697 SER PHE VAL ASP ALA SER MET VAL TYR GLY SER GLU GLU SEQRES 24 A 697 PRO LEU ALA ARG ASN LEU ARG ASN MET SER ASN GLN LEU SEQRES 25 A 697 GLY LEU LEU ALA VAL ASN GLN ARG PHE GLN ASP ASN GLY SEQRES 26 A 697 ARG ALA LEU LEU PRO PHE ASP ASN LEU HIS ASP ASP PRO SEQRES 27 A 697 CYS LEU LEU THR ASN ARG SER ALA ARG ILE PRO CYS PHE SEQRES 28 A 697 LEU ALA GLY ASP THR ARG SER SER GLU MET PRO GLU LEU SEQRES 29 A 697 THR SER MET HIS THR LEU LEU LEU ARG GLU HIS ASN ARG SEQRES 30 A 697 LEU ALA THR GLU LEU LYS SER LEU ASN PRO ARG TRP ASP SEQRES 31 A 697 GLY GLU ARG LEU TYR GLN GLU ALA ARG LYS ILE VAL GLY SEQRES 32 A 697 ALA MET VAL GLN ILE ILE THR TYR ARG ASP TYR LEU PRO SEQRES 33 A 697 LEU VAL LEU GLY PRO THR ALA MET ARG LYS TYR LEU PRO SEQRES 34 A 697 THR TYR ARG SER TYR ASN ASP SER VAL ASP PRO ARG ILE SEQRES 35 A 697 ALA ASN VAL PHE THR ASN ALA PHE ARG TYR GLY HIS THR SEQRES 36 A 697 LEU ILE GLN PRO PHE MET PHE ARG LEU ASP ASN ARG TYR SEQRES 37 A 697 GLN PRO MET GLU PRO ASN PRO ARG VAL PRO LEU SER ARG SEQRES 38 A 697 VAL PHE PHE ALA SER TRP ARG VAL VAL LEU GLU GLY GLY SEQRES 39 A 697 ILE ASP PRO ILE LEU ARG GLY LEU MET ALA THR PRO ALA SEQRES 40 A 697 LYS LEU ASN ARG GLN ASN GLN ILE ALA VAL ASP GLU ILE SEQRES 41 A 697 ARG GLU ARG LEU PHE GLU GLN VAL MET ARG ILE GLY LEU SEQRES 42 A 697 ASP LEU PRO ALA LEU ASN MET GLN ARG SER ARG ASP HIS SEQRES 43 A 697 GLY LEU PRO GLY TYR ASN ALA TRP ARG ARG PHE CYS GLY SEQRES 44 A 697 LEU PRO GLN PRO GLU THR VAL GLY GLN LEU GLY THR VAL SEQRES 45 A 697 LEU ARG ASN LEU LYS LEU ALA ARG LYS LEU MET GLU GLN SEQRES 46 A 697 TYR GLY THR PRO ASN ASN ILE ASP ILE TRP MET GLY GLY SEQRES 47 A 697 VAL SER GLU PRO LEU LYS ARG LYS GLY ARG VAL GLY PRO SEQRES 48 A 697 LEU LEU ALA CYS ILE ILE GLY THR GLN PHE ARG LYS LEU SEQRES 49 A 697 ARG ASP GLY ASP ARG PHE TRP TRP GLU ASN GLU GLY VAL SEQRES 50 A 697 PHE SER MET GLN GLN ARG GLN ALA LEU ALA GLN ILE SER SEQRES 51 A 697 LEU PRO ARG ILE ILE CYS ASP ASN THR GLY ILE THR THR SEQRES 52 A 697 VAL SER LYS ASN ASN ILE PHE MET SER ASN SER TYR PRO SEQRES 53 A 697 ARG ASP PHE VAL ASN CYS SER THR LEU PRO ALA LEU ASN SEQRES 54 A 697 LEU ALA SER TRP ARG GLU ALA SER MODRES 5MFA CSO A 316 CYS MODIFIED RESIDUE HET CSO A 316 21 HET NAG B 1 27 HET NAG B 2 28 HET NAG C 1 27 HET NAG C 2 28 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG A 801 28 HET NAG A 806 28 HET HEM A 812 71 HET CA A 813 1 HET CL A 814 1 HET CL A 815 1 HET CL A 816 1 HET CL A 817 1 HET CL A 818 1 HET PEG A 819 7 HET PEG A 820 7 HET PEG A 821 7 HET PEG A 822 7 HET PEG A 823 7 HET TRS A 824 8 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN TRS TRIS BUFFER FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 7 HEM C34 H32 FE N4 O4 FORMUL 8 CA CA 2+ FORMUL 9 CL 5(CL 1-) FORMUL 14 PEG 5(C4 H10 O3) FORMUL 19 TRS C4 H12 N O3 1+ FORMUL 20 HOH *766(H2 O) HELIX 1 AA1 LEU A 226 VAL A 235 1 10 HELIX 2 AA2 PRO A 238 LEU A 242 5 5 HELIX 3 AA3 LEU A 250 ASP A 264 1 15 HELIX 4 AA4 ALA A 270 VAL A 276 5 7 HELIX 5 AA5 ALA A 339 GLY A 344 1 6 HELIX 6 AA6 GLU A 346 LEU A 353 1 8 HELIX 7 AA7 PRO A 386 THR A 390 5 5 HELIX 8 AA8 MET A 409 ASN A 434 1 26 HELIX 9 AA9 ASP A 438 ASP A 461 1 24 HELIX 10 AB1 TYR A 462 GLY A 468 1 7 HELIX 11 AB2 GLY A 468 LEU A 476 1 9 HELIX 12 AB3 ALA A 491 PHE A 498 1 8 HELIX 13 AB4 ARG A 499 ILE A 505 5 7 HELIX 14 AB5 SER A 528 VAL A 530 5 3 HELIX 15 AB6 ALA A 533 GLU A 540 1 8 HELIX 16 AB7 ILE A 543 THR A 553 1 11 HELIX 17 AB8 VAL A 565 GLU A 570 1 6 HELIX 18 AB9 ASP A 582 HIS A 594 1 13 HELIX 19 AC1 GLY A 598 CYS A 606 1 9 HELIX 20 AC2 THR A 613 ARG A 622 1 10 HELIX 21 AC3 ASN A 623 GLY A 635 1 13 HELIX 22 AC4 THR A 636 ILE A 640 5 5 HELIX 23 AC5 ASP A 641 GLU A 649 1 9 HELIX 24 AC6 GLY A 658 GLY A 675 1 18 HELIX 25 AC7 SER A 687 ALA A 695 1 9 HELIX 26 AC8 SER A 698 THR A 707 1 10 HELIX 27 AC9 SER A 731 LEU A 733 5 3 HELIX 28 AD1 LEU A 738 ARG A 742 5 5 SHEET 1 AA1 2 ARG A 193 ALA A 194 0 SHEET 2 AA1 2 ILE A 330 ASN A 331 -1 O ASN A 331 N ARG A 193 SHEET 1 AA2 2 PRO A 244 SER A 249 0 SHEET 2 AA2 2 PRO A 554 LYS A 556 -1 O ALA A 555 N ASP A 245 SHEET 1 AA3 2 PHE A 508 PHE A 510 0 SHEET 2 AA3 2 ARG A 524 PRO A 526 -1 O VAL A 525 N MET A 509 SHEET 1 AA4 2 THR A 711 SER A 713 0 SHEET 2 AA4 2 PHE A 727 ASN A 729 -1 O VAL A 728 N VAL A 712 SSBOND 1 CYS A 158 CYS A 319 1555 1555 2.06 SSBOND 2 CYS A 167 CYS A 180 1555 1555 2.09 SSBOND 3 CYS A 281 CYS A 291 1555 1555 2.04 SSBOND 4 CYS A 285 CYS A 309 1555 1555 2.07 SSBOND 5 CYS A 387 CYS A 398 1555 1555 2.05 SSBOND 6 CYS A 606 CYS A 663 1555 1555 2.21 SSBOND 7 CYS A 704 CYS A 730 1555 1555 2.04 LINK C SER A 315 N CSO A 316 1555 1555 1.33 LINK C CSO A 316 N PRO A 317 1555 1555 1.34 LINK ND2 ASN A 323 C1 NAG A 801 1555 1555 1.41 LINK ND2 ASN A 355 C1 NAG D 1 1555 1555 1.48 LINK ND2 ASN A 391 C1 NAG B 1 1555 1555 1.37 LINK OE2AGLU A 408 CMB HEM A 812 1555 1555 1.42 LINK SD MET A 409 CBB HEM A 812 1555 1555 1.74 LINK ND2 ASN A 483 C1 NAG C 1 1555 1555 1.58 LINK ND2 ASN A 729 C1 NAG A 806 1555 1555 1.50 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.49 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.49 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.15 LINK O ASP A 262 CA CA A 813 1555 1555 2.29 LINK OD1 ASP A 262 CA CA A 813 1555 1555 2.38 LINK O THR A 334 CA CA A 813 1555 1555 2.43 LINK OG1 THR A 334 CA CA A 813 1555 1555 2.45 LINK O PHE A 336 CA CA A 813 1555 1555 2.36 LINK OD1 ASP A 338 CA CA A 813 1555 1555 2.43 LINK OG SER A 340 CA CA A 813 1555 1555 2.38 LINK NE2 HIS A 502 FE HEM A 812 1555 1555 2.10 CISPEP 1 PRO A 289 PRO A 290 0 9.27 CISPEP 2 GLU A 520 PRO A 521 0 4.99 CISPEP 3 TYR A 723 PRO A 724 0 -5.65 CISPEP 4 TYR A 723 PRO A 724 0 2.35 CRYST1 106.152 109.151 83.961 90.00 122.66 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009420 0.000000 0.006038 0.00000 SCALE2 0.000000 0.009162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014147 0.00000