HEADER OXIDOREDUCTASE 15-JUN-16 5LBE TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) G294E VARIANT IN COMPLEX WITH TITLE 2 MN(II) AND N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE TITLE 3 (IOX3/FG2216) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (181-426); COMPND 5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 6 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 7 EC: 1.14.11.29; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: FRAGMENT: CATALYTIC DOMAIN (181-426) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A(+); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,C.J.SCHOFIELD REVDAT 4 10-JAN-24 5LBE 1 REMARK REVDAT 3 29-NOV-17 5LBE 1 REMARK REVDAT 2 07-SEP-16 5LBE 1 JRNL REVDAT 1 31-AUG-16 5LBE 0 JRNL AUTH R.CHOWDHURY,I.K.LEUNG,Y.M.TIAN,M.I.ABBOUD,W.GE,C.DOMENE, JRNL AUTH 2 F.X.CANTRELLE,I.LANDRIEU,A.P.HARDY,C.W.PUGH,P.J.RATCLIFFE, JRNL AUTH 3 T.D.CLARIDGE,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR OXYGEN DEGRADATION DOMAIN SELECTIVITY JRNL TITL 2 OF THE HIF PROLYL HYDROXYLASES. JRNL REF NAT COMMUN V. 7 12673 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27561929 JRNL DOI 10.1038/NCOMMS12673 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM. BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 PMID 23683440 REMARK 1 DOI 10.1021/CB400088Q REMARK 1 REFERENCE 2 REMARK 1 AUTH R.CHOWDHURY,M.A.MCDONOUGH,J.MECINOVIC,C.LOENARZ,E.FLASHMAN, REMARK 1 AUTH 2 K.S.HEWITSON,C.DOMENE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURAL BASIS FOR BINDING OF HYPOXIA-INDUCIBLE FACTOR TO REMARK 1 TITL 2 THE OXYGEN-SENSING PROLYL HYDROXYLASES. REMARK 1 REF STRUCTURE V. 17 981 2009 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 19604478 REMARK 1 DOI 10.1016/J.STR.2009.06.002 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2159 - 3.7662 1.00 2771 152 0.1442 0.1546 REMARK 3 2 3.7662 - 2.9900 1.00 2708 137 0.1602 0.1728 REMARK 3 3 2.9900 - 2.6122 1.00 2664 153 0.1809 0.1980 REMARK 3 4 2.6122 - 2.3735 1.00 2708 142 0.1735 0.1649 REMARK 3 5 2.3735 - 2.2034 1.00 2673 110 0.1641 0.1903 REMARK 3 6 2.2034 - 2.0735 1.00 2667 143 0.1764 0.1708 REMARK 3 7 2.0735 - 1.9697 1.00 2644 162 0.1885 0.2275 REMARK 3 8 1.9697 - 1.8840 1.00 2652 145 0.2103 0.2402 REMARK 3 9 1.8840 - 1.8114 1.00 2639 154 0.2236 0.2632 REMARK 3 10 1.8114 - 1.7489 0.95 2569 115 0.2493 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.45 REMARK 3 B_SOL : 66.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1783 REMARK 3 ANGLE : 0.813 2419 REMARK 3 CHIRALITY : 0.053 257 REMARK 3 PLANARITY : 0.005 318 REMARK 3 DIHEDRAL : 15.565 1053 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 188:204) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7453 2.4369 -1.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.5602 T22: 0.3524 REMARK 3 T33: 0.5454 T12: -0.0503 REMARK 3 T13: -0.0171 T23: -0.1290 REMARK 3 L TENSOR REMARK 3 L11: 0.4980 L22: 0.8727 REMARK 3 L33: 0.2927 L12: -0.3777 REMARK 3 L13: 0.3389 L23: -0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.0456 S13: -0.4921 REMARK 3 S21: -0.2784 S22: 0.1005 S23: 0.2036 REMARK 3 S31: -0.0077 S32: 0.4169 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 205:215) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8707 9.4770 -0.5099 REMARK 3 T TENSOR REMARK 3 T11: 0.4325 T22: 0.3123 REMARK 3 T33: 0.3810 T12: 0.2154 REMARK 3 T13: 0.0455 T23: -0.1527 REMARK 3 L TENSOR REMARK 3 L11: 0.5532 L22: 0.4882 REMARK 3 L33: 0.8459 L12: 0.0783 REMARK 3 L13: 0.4108 L23: 0.5661 REMARK 3 S TENSOR REMARK 3 S11: 0.4459 S12: -0.0016 S13: -1.0336 REMARK 3 S21: -0.3915 S22: -0.1153 S23: -0.0079 REMARK 3 S31: 1.2591 S32: -0.1092 S33: 0.1427 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 216:232) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2750 24.4752 -12.1789 REMARK 3 T TENSOR REMARK 3 T11: 0.4511 T22: 0.5885 REMARK 3 T33: 0.4587 T12: 0.0093 REMARK 3 T13: 0.1514 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 0.7232 L22: 0.2485 REMARK 3 L33: 0.4658 L12: 0.1571 REMARK 3 L13: -0.1832 L23: -0.2210 REMARK 3 S TENSOR REMARK 3 S11: 0.1999 S12: 0.4710 S13: 0.4077 REMARK 3 S21: -0.3590 S22: -0.4956 S23: -0.7435 REMARK 3 S31: 0.0237 S32: 0.4552 S33: -0.0098 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 233:266) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0923 35.6536 -2.6827 REMARK 3 T TENSOR REMARK 3 T11: 0.4497 T22: 0.4082 REMARK 3 T33: 0.4931 T12: -0.0246 REMARK 3 T13: -0.0252 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.4403 L22: 1.7669 REMARK 3 L33: 1.9531 L12: -0.7393 REMARK 3 L13: -0.2241 L23: -1.6760 REMARK 3 S TENSOR REMARK 3 S11: -0.1804 S12: 0.0073 S13: 0.7529 REMARK 3 S21: 0.0319 S22: 0.0104 S23: -0.1023 REMARK 3 S31: -0.5414 S32: 0.1668 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 267:283) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4026 13.4832 -11.7138 REMARK 3 T TENSOR REMARK 3 T11: 0.5426 T22: 0.4704 REMARK 3 T33: 0.4254 T12: -0.0268 REMARK 3 T13: 0.0077 T23: -0.1925 REMARK 3 L TENSOR REMARK 3 L11: 0.7195 L22: 0.3728 REMARK 3 L33: 0.5004 L12: -0.4425 REMARK 3 L13: 0.4569 L23: -0.1075 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: 0.7774 S13: -0.5803 REMARK 3 S21: -0.7491 S22: 0.0045 S23: 0.2856 REMARK 3 S31: 0.2806 S32: 0.1299 S33: 0.0021 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 284:293) REMARK 3 ORIGIN FOR THE GROUP (A): -49.9537 7.6526 -2.5831 REMARK 3 T TENSOR REMARK 3 T11: 0.4830 T22: 0.5173 REMARK 3 T33: 0.6712 T12: 0.0115 REMARK 3 T13: -0.0682 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.1533 L22: 0.0802 REMARK 3 L33: 0.1020 L12: -0.0134 REMARK 3 L13: 0.1461 L23: -0.0446 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.1656 S13: -0.8531 REMARK 3 S21: 0.0744 S22: 0.5691 S23: 0.0466 REMARK 3 S31: 0.0914 S32: -0.2084 S33: 0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 294:306) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3300 26.5395 -3.1858 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.3484 REMARK 3 T33: 0.3675 T12: -0.0236 REMARK 3 T13: -0.0338 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 0.2046 L22: 0.9337 REMARK 3 L33: 0.6467 L12: -0.1495 REMARK 3 L13: 0.2147 L23: -0.8429 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: 0.2835 S13: 0.5424 REMARK 3 S21: -0.3378 S22: 0.0007 S23: 0.1283 REMARK 3 S31: -0.2640 S32: 0.1749 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 307:320) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9193 25.4009 8.4774 REMARK 3 T TENSOR REMARK 3 T11: 0.3098 T22: 0.3737 REMARK 3 T33: 0.4002 T12: -0.0167 REMARK 3 T13: 0.0308 T23: -0.1281 REMARK 3 L TENSOR REMARK 3 L11: 0.2893 L22: 0.7974 REMARK 3 L33: 0.4460 L12: -0.4594 REMARK 3 L13: -0.1595 L23: -0.0359 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: -0.1075 S13: 0.5475 REMARK 3 S21: 0.2754 S22: -0.1451 S23: 0.5665 REMARK 3 S31: -0.2172 S32: -0.0432 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 321:335) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5162 18.6307 -0.2205 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.3419 REMARK 3 T33: 0.3452 T12: 0.0205 REMARK 3 T13: 0.0170 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 0.3185 L22: 1.7349 REMARK 3 L33: 0.9055 L12: 0.0084 REMARK 3 L13: 0.5285 L23: -0.2712 REMARK 3 S TENSOR REMARK 3 S11: 0.1736 S12: -0.1265 S13: -0.2699 REMARK 3 S21: -0.1147 S22: -0.1535 S23: -0.0429 REMARK 3 S31: 0.2239 S32: 0.2332 S33: -0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 336:350) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1505 18.5197 12.3952 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.4029 REMARK 3 T33: 0.3958 T12: -0.0265 REMARK 3 T13: -0.0122 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6647 L22: 1.0891 REMARK 3 L33: 0.7627 L12: -0.8654 REMARK 3 L13: 0.5185 L23: -0.4721 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: -0.4753 S13: -0.7723 REMARK 3 S21: 0.7304 S22: -0.0308 S23: -0.2341 REMARK 3 S31: 0.1104 S32: 0.2686 S33: 0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 351:361) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1967 15.4287 7.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.4684 REMARK 3 T33: 0.3751 T12: 0.0445 REMARK 3 T13: 0.0141 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.9896 L22: 0.5111 REMARK 3 L33: 0.7747 L12: -0.2067 REMARK 3 L13: -0.1979 L23: -0.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.1728 S12: -0.3316 S13: -0.5213 REMARK 3 S21: 0.0719 S22: -0.3440 S23: -0.3823 REMARK 3 S31: 0.8522 S32: 0.7683 S33: -0.0386 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 362:371) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2240 14.2174 4.5543 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.3655 REMARK 3 T33: 0.3723 T12: -0.0045 REMARK 3 T13: 0.0196 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 0.3089 L22: 0.3641 REMARK 3 L33: 0.2429 L12: 0.2787 REMARK 3 L13: 0.2310 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0294 S13: -0.2872 REMARK 3 S21: -0.0183 S22: -0.0637 S23: 0.1961 REMARK 3 S31: 0.2688 S32: -0.0725 S33: -0.0003 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 372:381) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1530 24.2586 10.0245 REMARK 3 T TENSOR REMARK 3 T11: 0.3290 T22: 0.3946 REMARK 3 T33: 0.3218 T12: -0.0566 REMARK 3 T13: -0.0379 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 0.5589 L22: 0.6400 REMARK 3 L33: 0.4583 L12: -0.6356 REMARK 3 L13: 0.4742 L23: -0.4600 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.5107 S13: -0.2294 REMARK 3 S21: 0.5670 S22: -0.2149 S23: -0.2963 REMARK 3 S31: -0.0230 S32: 0.1779 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 382:392) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9296 21.4650 -2.5264 REMARK 3 T TENSOR REMARK 3 T11: 0.2525 T22: 0.3306 REMARK 3 T33: 0.3246 T12: -0.0055 REMARK 3 T13: -0.0031 T23: -0.0786 REMARK 3 L TENSOR REMARK 3 L11: 0.5286 L22: 1.1325 REMARK 3 L33: 0.4218 L12: -0.8211 REMARK 3 L13: 0.4944 L23: -0.6601 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.5834 S13: -0.3144 REMARK 3 S21: -0.1584 S22: 0.1277 S23: 0.0597 REMARK 3 S31: 0.1035 S32: 0.1415 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 393:404) REMARK 3 ORIGIN FOR THE GROUP (A): -58.9347 21.2871 -0.8880 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.4085 REMARK 3 T33: 0.6344 T12: -0.0253 REMARK 3 T13: -0.0502 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.2841 L22: 0.1181 REMARK 3 L33: 0.2108 L12: 0.0744 REMARK 3 L13: -0.1679 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.2149 S13: 0.3979 REMARK 3 S21: -0.0717 S22: 0.4418 S23: 0.1829 REMARK 3 S31: -0.0780 S32: -0.0854 S33: 0.0005 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 409:413) REMARK 3 ORIGIN FOR THE GROUP (A): -71.7183 33.6515 -12.3571 REMARK 3 T TENSOR REMARK 3 T11: 0.8132 T22: 0.5036 REMARK 3 T33: 0.6297 T12: 0.0020 REMARK 3 T13: 0.0885 T23: 0.1820 REMARK 3 L TENSOR REMARK 3 L11: 4.6074 L22: 3.0806 REMARK 3 L33: 2.7410 L12: 3.5917 REMARK 3 L13: 3.4490 L23: 2.4892 REMARK 3 S TENSOR REMARK 3 S11: -0.3040 S12: 0.8710 S13: 0.3659 REMARK 3 S21: -0.4475 S22: -0.2102 S23: 0.9995 REMARK 3 S31: -0.8188 S32: -0.2266 S33: -2.0748 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1200000470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 706E REMARK 200 DATA SCALING SOFTWARE : HKL-2000 706E REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.749 REMARK 200 RESOLUTION RANGE LOW (A) : 32.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.95700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 2.0 M AMMONIUM REMARK 280 SULPHATE, 7% V/V DIOXANE, 0.002 M MNCL2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.82700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.82700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.82700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 LYS A 244 REMARK 465 SER A 245 REMARK 465 THR A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 LEU A 414 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 291 CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 337 CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 ARG A 370 CZ NH1 NH2 REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 413 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 626 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -57.91 -128.39 REMARK 500 PHE A 346 76.11 -118.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 92.0 REMARK 620 3 HIS A 374 NE2 87.8 88.9 REMARK 620 4 UN9 A 502 O13 99.3 165.6 82.7 REMARK 620 5 UN9 A 502 N8 85.6 119.5 151.0 70.6 REMARK 620 6 HOH A 612 O 168.1 82.7 102.6 87.7 87.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UN9 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQR RELATED DB: PDB REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 RELATED ID: 5L9B RELATED DB: PDB REMARK 900 RELATED ID: 5L9V RELATED DB: PDB REMARK 900 RELATED ID: 5L9R RELATED DB: PDB REMARK 900 RELATED ID: 5LA9 RELATED DB: PDB REMARK 900 RELATED ID: 5LAS RELATED DB: PDB REMARK 900 RELATED ID: 5LAT RELATED DB: PDB REMARK 900 RELATED ID: 5LB6 RELATED DB: PDB REMARK 900 RELATED ID: 5LBB RELATED DB: PDB REMARK 900 RELATED ID: 5LBC RELATED DB: PDB DBREF 5LBE A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 5LBE GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBE SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBE HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBE MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBE ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBE SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQADV 5LBE GLU A 294 UNP Q9GZT9 GLY 294 ENGINEERED MUTATION SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 252 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 252 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 252 ILE ASN GLU ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL SEQRES 20 A 252 GLY LYS ASP VAL PHE HET MN A 501 1 HET UN9 A 502 27 HET BCT A 503 5 HETNAM MN MANGANESE (II) ION HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE HETNAM BCT BICARBONATE ION FORMUL 2 MN MN 2+ FORMUL 3 UN9 C12 H9 CL N2 O4 FORMUL 4 BCT C H O3 1- FORMUL 5 HOH *103(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 ASP A 246 ASP A 250 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 TYR A 403 1 11 SHEET 1 AA1 6 ILE A 207 VAL A 210 0 SHEET 2 AA1 6 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 6 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA1 6 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 6 AA1 6 LYS A 255 ILE A 259 -1 N LYS A 255 O CYS A 302 SHEET 1 AA2 5 ILE A 207 VAL A 210 0 SHEET 2 AA2 5 LEU A 363 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 5 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 5 ARG A 383 ASP A 392 -1 O ILE A 386 N TYR A 328 SHEET 5 AA2 5 ILE A 292 ARG A 295 -1 N GLU A 294 O PHE A 391 SHEET 1 AA3 2 LEU A 240 SER A 242 0 SHEET 2 AA3 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AA4 4 TYR A 310 HIS A 313 0 SHEET 2 AA4 4 HIS A 374 VAL A 376 -1 O HIS A 374 N HIS A 313 SHEET 3 AA4 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA4 4 ALA A 354 ILE A 356 -1 O ALA A 354 N ILE A 345 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.05 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.25 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.20 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.16 LINK MN MN A 501 O13 UN9 A 502 1555 1555 2.21 LINK MN MN A 501 N8 UN9 A 502 1555 1555 2.34 LINK MN MN A 501 O HOH A 612 1555 1555 2.22 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 UN9 A 502 SITE 2 AC1 5 HOH A 612 SITE 1 AC2 16 ASP A 254 ILE A 256 MET A 299 TYR A 303 SITE 2 AC2 16 TYR A 310 HIS A 313 ASP A 315 TYR A 329 SITE 3 AC2 16 LEU A 343 HIS A 374 VAL A 376 ARG A 383 SITE 4 AC2 16 ARG A 398 MN A 501 HOH A 612 HOH A 632 SITE 1 AC3 2 ARG A 312 PRO A 373 CRYST1 110.450 110.450 39.654 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009054 0.005227 0.000000 0.00000 SCALE2 0.000000 0.010455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025218 0.00000