HEADER TRANSFERASE 21-JUL-16 5KY8 TITLE MOUSE POFUT1 IN COMPLEX WITH O-GLUCOSYLATED MOUSE NOTCH1 EGF12 MUTANT TITLE 2 (D464G) AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 1,O-FUCT-1; COMPND 5 EC: 2.4.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NOTCH 1,MOTCH A,MT14,P300; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: POFUT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PB-T-PAF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: NOTCH1, MOTCH; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,J.M.RINI REVDAT 4 29-JUL-20 5KY8 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-JUN-17 5KY8 1 JRNL REVDAT 2 31-MAY-17 5KY8 1 JRNL REVDAT 1 17-MAY-17 5KY8 0 JRNL AUTH Z.LI,K.HAN,J.E.PAK,M.SATKUNARAJAH,D.ZHOU,J.M.RINI JRNL TITL RECOGNITION OF EGF-LIKE DOMAINS BY THE NOTCH-MODIFYING JRNL TITL 2 O-FUCOSYLTRANSFERASE POFUT1. JRNL REF NAT. CHEM. BIOL. V. 13 757 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28530709 JRNL DOI 10.1038/NCHEMBIO.2381 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 44211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4384 - 4.1568 0.97 2757 133 0.1630 0.1822 REMARK 3 2 4.1568 - 3.2997 0.98 2622 159 0.1580 0.1682 REMARK 3 3 3.2997 - 2.8826 0.98 2637 139 0.1837 0.2214 REMARK 3 4 2.8826 - 2.6191 0.99 2606 152 0.1922 0.2027 REMARK 3 5 2.6191 - 2.4314 0.99 2629 148 0.1927 0.2220 REMARK 3 6 2.4314 - 2.2880 0.99 2616 154 0.1986 0.2319 REMARK 3 7 2.2880 - 2.1735 1.00 2628 145 0.1990 0.2271 REMARK 3 8 2.1735 - 2.0788 1.00 2628 116 0.2069 0.2338 REMARK 3 9 2.0788 - 1.9988 1.00 2607 138 0.2160 0.2295 REMARK 3 10 1.9988 - 1.9298 1.00 2638 123 0.2294 0.2559 REMARK 3 11 1.9298 - 1.8695 1.00 2636 131 0.2389 0.2642 REMARK 3 12 1.8695 - 1.8161 1.00 2602 143 0.2526 0.2973 REMARK 3 13 1.8161 - 1.7682 1.00 2605 127 0.2734 0.3260 REMARK 3 14 1.7682 - 1.7251 1.00 2600 136 0.2867 0.2834 REMARK 3 15 1.7251 - 1.6859 1.00 2630 138 0.3128 0.3360 REMARK 3 16 1.6859 - 1.6500 0.99 2545 143 0.3360 0.3654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3224 REMARK 3 ANGLE : 0.776 4402 REMARK 3 CHIRALITY : 0.046 471 REMARK 3 PLANARITY : 0.005 565 REMARK 3 DIHEDRAL : 15.714 1904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9828 39.1978 22.5978 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.3462 REMARK 3 T33: 0.1943 T12: -0.0235 REMARK 3 T13: 0.0287 T23: -0.0757 REMARK 3 L TENSOR REMARK 3 L11: 1.4151 L22: 2.7063 REMARK 3 L33: 1.9433 L12: -0.1159 REMARK 3 L13: -0.2674 L23: 0.8173 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.5020 S13: 0.0333 REMARK 3 S21: 0.2274 S22: -0.1409 S23: 0.2231 REMARK 3 S31: 0.0877 S32: 0.1171 S33: 0.1463 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4240 45.8454 18.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.2634 REMARK 3 T33: 0.1685 T12: -0.0433 REMARK 3 T13: 0.0050 T23: -0.0801 REMARK 3 L TENSOR REMARK 3 L11: 2.2677 L22: 3.1062 REMARK 3 L33: 1.3670 L12: -0.2719 REMARK 3 L13: -0.4509 L23: 0.7816 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.3124 S13: 0.2668 REMARK 3 S21: 0.0614 S22: 0.0050 S23: 0.0020 REMARK 3 S31: -0.2072 S32: 0.1447 S33: 0.0285 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7623 21.1268 3.8743 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.1643 REMARK 3 T33: 0.3097 T12: -0.0005 REMARK 3 T13: 0.0359 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 4.3843 L22: 3.2658 REMARK 3 L33: 2.3200 L12: -0.7265 REMARK 3 L13: -1.6673 L23: 1.2215 REMARK 3 S TENSOR REMARK 3 S11: -0.2255 S12: 0.1538 S13: -0.7375 REMARK 3 S21: -0.0402 S22: -0.1005 S23: 0.1193 REMARK 3 S31: 0.0888 S32: 0.0052 S33: 0.0741 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 453 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7130 50.4926 5.6616 REMARK 3 T TENSOR REMARK 3 T11: 0.5588 T22: 0.3704 REMARK 3 T33: 0.8051 T12: -0.1161 REMARK 3 T13: 0.1340 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 7.0643 L22: 1.2404 REMARK 3 L33: 6.4246 L12: 2.9135 REMARK 3 L13: -5.0543 L23: -2.4064 REMARK 3 S TENSOR REMARK 3 S11: 0.3589 S12: -0.2625 S13: 0.7923 REMARK 3 S21: -1.1214 S22: -0.1862 S23: -1.7609 REMARK 3 S31: -1.2185 S32: 1.1264 S33: -0.1306 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 459 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2840 44.9278 1.7021 REMARK 3 T TENSOR REMARK 3 T11: 0.5017 T22: 0.3321 REMARK 3 T33: 0.4858 T12: 0.0631 REMARK 3 T13: 0.0486 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 5.3417 L22: 1.9455 REMARK 3 L33: 5.5155 L12: -2.5545 REMARK 3 L13: -1.8716 L23: 0.6247 REMARK 3 S TENSOR REMARK 3 S11: 0.5367 S12: 0.1690 S13: 0.9318 REMARK 3 S21: -0.8126 S22: -0.5386 S23: -0.2289 REMARK 3 S31: -0.6236 S32: 0.0320 S33: -0.0375 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 478 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8576 41.6919 -1.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.6126 T22: 0.6035 REMARK 3 T33: 0.5775 T12: 0.0618 REMARK 3 T13: -0.2836 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 4.5726 L22: 2.7036 REMARK 3 L33: 7.1139 L12: -0.7536 REMARK 3 L13: -0.7659 L23: -1.9902 REMARK 3 S TENSOR REMARK 3 S11: -0.4258 S12: 1.0144 S13: 0.4953 REMARK 3 S21: -1.3869 S22: 0.1007 S23: 1.5207 REMARK 3 S31: -0.4185 S32: -1.2459 S33: 0.2032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44218 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.12700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG2000 MME, 50 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 ASP B 452 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 33 OG REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLN A 326 CG CD OE1 NE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 453 CG1 CG2 REMARK 470 GLN B 470 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 273 HG1 THR A 279 1.57 REMARK 500 OD2 ASP A 141 H LYS A 143 1.58 REMARK 500 O HOH A 683 O HOH A 724 2.19 REMARK 500 ND2 ASN A 67 O5 NAG A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 272 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 246 13.34 -141.39 REMARK 500 MET A 267 -116.82 46.68 REMARK 500 SER A 317 -118.75 -154.98 REMARK 500 ASP A 330 -3.18 93.96 REMARK 500 MET A 383 85.60 -154.01 REMARK 500 GLU B 473 -177.12 -176.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KXH RELATED DB: PDB REMARK 900 RELATED ID: 5KXQ RELATED DB: PDB REMARK 900 RELATED ID: 5KY0 RELATED DB: PDB REMARK 900 RELATED ID: 5KY2 RELATED DB: PDB REMARK 900 RELATED ID: 5KY3 RELATED DB: PDB REMARK 900 RELATED ID: 5KY4 RELATED DB: PDB REMARK 900 RELATED ID: 5KY5 RELATED DB: PDB REMARK 900 RELATED ID: 5KY7 RELATED DB: PDB REMARK 900 RELATED ID: 5KY9 RELATED DB: PDB DBREF 5KY8 A 33 384 UNP Q91ZW2 OFUT1_MOUSE 33 384 DBREF 5KY8 B 452 491 UNP Q01705 NOTC1_MOUSE 452 491 SEQADV 5KY8 GLY A 30 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY8 ALA A 31 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY8 PRO A 32 UNP Q91ZW2 EXPRESSION TAG SEQADV 5KY8 GLY B 464 UNP Q01705 ASP 464 ENGINEERED MUTATION SEQRES 1 A 355 GLY ALA PRO SER TRP ASP LEU ALA GLY TYR LEU LEU TYR SEQRES 2 A 355 CYS PRO CYS MET GLY ARG PHE GLY ASN GLN ALA ASP HIS SEQRES 3 A 355 PHE LEU GLY SER LEU ALA PHE ALA LYS LEU LEU ASN ARG SEQRES 4 A 355 THR LEU ALA VAL PRO PRO TRP ILE GLU TYR GLN HIS HIS SEQRES 5 A 355 LYS PRO PRO PHE THR ASN LEU HIS VAL SER TYR GLN LYS SEQRES 6 A 355 TYR PHE LYS LEU GLU PRO LEU GLN ALA TYR HIS ARG VAL SEQRES 7 A 355 VAL SER LEU GLU ASP PHE MET GLU ASN LEU ALA PRO SER SEQRES 8 A 355 HIS TRP PRO PRO GLU LYS ARG VAL ALA TYR CYS PHE GLU SEQRES 9 A 355 VAL ALA ALA GLN ARG SER PRO ASP LYS LYS THR CYS PRO SEQRES 10 A 355 MET LYS GLU GLY ASN PRO PHE GLY PRO PHE TRP ASP GLN SEQRES 11 A 355 PHE HIS VAL SER PHE ASN LYS SER GLU LEU PHE THR GLY SEQRES 12 A 355 ILE SER PHE SER ALA SER TYR LYS GLU GLN TRP THR GLN SEQRES 13 A 355 ARG PHE PRO ALA LYS GLU HIS PRO VAL LEU ALA LEU PRO SEQRES 14 A 355 GLY ALA PRO ALA GLN PHE PRO VAL LEU GLU GLU HIS ARG SEQRES 15 A 355 GLU LEU GLN LYS TYR MET VAL TRP SER ASP GLU MET VAL SEQRES 16 A 355 ARG THR GLY GLU ALA LEU ILE SER ALA HIS LEU VAL ARG SEQRES 17 A 355 PRO TYR VAL GLY ILE HIS LEU ARG ILE GLY SER ASP TRP SEQRES 18 A 355 LYS ASN ALA CYS ALA MET LEU LYS ASP GLY THR ALA GLY SEQRES 19 A 355 SER HIS PHE MET ALA SER PRO GLN CYS VAL GLY TYR SER SEQRES 20 A 355 ARG SER THR ALA THR PRO LEU THR MET THR MET CYS LEU SEQRES 21 A 355 PRO ASP LEU LYS GLU ILE GLN ARG ALA VAL THR LEU TRP SEQRES 22 A 355 VAL ARG ALA LEU ASN ALA ARG SER VAL TYR ILE ALA THR SEQRES 23 A 355 ASP SER GLU SER TYR VAL SER GLU ILE GLN GLN LEU PHE SEQRES 24 A 355 LYS ASP LYS VAL ARG VAL VAL SER LEU LYS PRO GLU VAL SEQRES 25 A 355 ALA GLN ILE ASP LEU TYR ILE LEU GLY GLN ALA ASP HIS SEQRES 26 A 355 PHE ILE GLY ASN CYS VAL SER SER PHE THR ALA PHE VAL SEQRES 27 A 355 LYS ARG GLU ARG ASP LEU HIS GLY ARG GLN SER SER PHE SEQRES 28 A 355 PHE GLY MET ASP SEQRES 1 B 40 ASP VAL ASN GLU CYS ILE SER ASN PRO CYS GLN ASN GLY SEQRES 2 B 40 ALA THR CYS LEU ASP GLN ILE GLY GLU PHE GLN CYS ILE SEQRES 3 B 40 CYS MET PRO GLY TYR GLU GLY VAL TYR CYS GLU ILE ASN SEQRES 4 B 40 THR HET NAG A 401 28 HET GDP A 402 38 HET BGC B1001 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM BGC BETA-D-GLUCOPYRANOSE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 BGC C6 H12 O6 FORMUL 6 HOH *271(H2 O) HELIX 1 AA1 ARG A 48 ASN A 67 1 20 HELIX 2 AA2 SER A 91 PHE A 96 1 6 HELIX 3 AA3 LEU A 98 TYR A 104 5 7 HELIX 4 AA4 LEU A 110 LEU A 117 1 8 HELIX 5 AA5 LEU A 117 TRP A 122 1 6 HELIX 6 AA6 PRO A 123 LYS A 126 5 4 HELIX 7 AA7 GLU A 133 GLN A 137 1 5 HELIX 8 AA8 PRO A 152 GLN A 159 1 8 HELIX 9 AA9 SER A 176 SER A 178 5 3 HELIX 10 AB1 TYR A 179 PHE A 187 1 9 HELIX 11 AB2 LEU A 207 MET A 217 5 11 HELIX 12 AB3 SER A 220 LEU A 235 1 16 HELIX 13 AB4 GLY A 247 ASP A 259 1 13 HELIX 14 AB5 SER A 269 GLY A 274 1 6 HELIX 15 AB6 THR A 284 LEU A 289 1 6 HELIX 16 AB7 ASP A 291 ASN A 307 1 17 HELIX 17 AB8 TYR A 320 GLN A 326 1 7 HELIX 18 AB9 VAL A 341 GLN A 351 1 11 HELIX 19 AC1 SER A 361 HIS A 374 1 14 HELIX 20 AC2 ASN B 454 ASN B 459 5 6 SHEET 1 AA1 4 VAL A 107 SER A 109 0 SHEET 2 AA1 4 THR A 69 VAL A 72 1 N LEU A 70 O VAL A 108 SHEET 3 AA1 4 TYR A 39 TYR A 42 1 N LEU A 40 O ALA A 71 SHEET 4 AA1 4 VAL A 194 LEU A 197 1 O LEU A 195 N LEU A 41 SHEET 1 AA2 2 TRP A 75 GLU A 77 0 SHEET 2 AA2 2 LEU A 88 VAL A 90 -1 O LEU A 88 N GLU A 77 SHEET 1 AA3 2 VAL A 128 PHE A 132 0 SHEET 2 AA3 2 LYS A 166 PHE A 170 1 O GLU A 168 N ALA A 129 SHEET 1 AA4 5 ARG A 333 SER A 336 0 SHEET 2 AA4 5 SER A 310 THR A 315 1 N VAL A 311 O VAL A 335 SHEET 3 AA4 5 TYR A 239 LEU A 244 1 N LEU A 244 O ALA A 314 SHEET 4 AA4 5 HIS A 354 GLY A 357 1 O HIS A 354 N GLY A 241 SHEET 5 AA4 5 SER A 378 PHE A 380 1 O SER A 379 N PHE A 355 SHEET 1 AA5 2 THR B 466 ASP B 469 0 SHEET 2 AA5 2 PHE B 474 ILE B 477 -1 O ILE B 477 N THR B 466 SHEET 1 AA6 2 TYR B 482 GLU B 483 0 SHEET 2 AA6 2 ILE B 489 ASN B 490 -1 O ILE B 489 N GLU B 483 SSBOND 1 CYS A 43 CYS A 45 1555 1555 2.04 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.03 SSBOND 3 CYS A 254 CYS A 288 1555 1555 2.03 SSBOND 4 CYS A 272 CYS A 359 1555 1555 2.05 SSBOND 5 CYS B 456 CYS B 467 1555 1555 1.92 SSBOND 6 CYS B 461 CYS B 476 1555 1555 2.03 SSBOND 7 CYS B 478 CYS B 487 1555 1555 2.03 LINK ND2 ASN A 67 C1 NAG A 401 1555 1555 1.40 LINK OG SER B 458 C1 BGC B1001 1555 1555 1.48 CISPEP 1 PRO A 83 PRO A 84 0 4.02 CISPEP 2 ASN A 151 PRO A 152 0 4.99 CISPEP 3 PHE A 204 PRO A 205 0 -1.92 CISPEP 4 ARG A 237 PRO A 238 0 -2.00 CRYST1 51.540 65.900 106.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009361 0.00000