HEADER TRANSCRIPTION/DNA 23-MAY-16 5K5J TITLE HOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF5-8 AND DNA COMPLEX TITLE 2 STRUCTURE IN SPACE GROUP P41212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 378-489; COMPND 5 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*CP*CP*TP*GP*CP*TP*GP*GP*CP*AP*AP*C)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*TP*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*G)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3)-RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC1199; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS CCCTC-BINDING FACTOR, CTCF, ZINC FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 27-SEP-23 5K5J 1 REMARK REVDAT 5 25-DEC-19 5K5J 1 REMARK REVDAT 4 20-SEP-17 5K5J 1 REMARK REVDAT 3 14-JUN-17 5K5J 1 JRNL REVDAT 2 07-JUN-17 5K5J 1 JRNL REVDAT 1 24-MAY-17 5K5J 0 JRNL AUTH H.HASHIMOTO,D.WANG,J.R.HORTON,X.ZHANG,V.G.CORCES,X.CHENG JRNL TITL STRUCTURAL BASIS FOR THE VERSATILE AND METHYLATION-DEPENDENT JRNL TITL 2 BINDING OF CTCF TO DNA. JRNL REF MOL. CELL V. 66 711 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28529057 JRNL DOI 10.1016/J.MOLCEL.2017.05.004 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2400: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8670 - 3.9080 0.97 2829 150 0.1592 0.2034 REMARK 3 2 3.9080 - 3.1032 0.97 2655 139 0.2191 0.2731 REMARK 3 3 3.1032 - 2.7113 1.00 2713 144 0.2875 0.3291 REMARK 3 4 2.7113 - 2.4636 1.00 2673 141 0.2796 0.3017 REMARK 3 5 2.4636 - 2.2871 1.00 2684 141 0.2934 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1604 REMARK 3 ANGLE : 0.500 2253 REMARK 3 CHIRALITY : 0.035 240 REMARK 3 PLANARITY : 0.003 193 REMARK 3 DIHEDRAL : 19.402 853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 376:380 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3194 21.4347 0.9945 REMARK 3 T TENSOR REMARK 3 T11: 0.7518 T22: 0.9735 REMARK 3 T33: 0.6397 T12: -0.0025 REMARK 3 T13: -0.1662 T23: -0.0778 REMARK 3 L TENSOR REMARK 3 L11: 2.2254 L22: 3.3421 REMARK 3 L33: 3.0571 L12: 2.1262 REMARK 3 L13: 1.9529 L23: 2.8667 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -1.5331 S13: -0.3328 REMARK 3 S21: 2.2222 S22: -0.6284 S23: -1.2384 REMARK 3 S31: -0.3692 S32: 0.5347 S33: 1.0885 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 381:428 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2888 33.9109 -10.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.5867 T22: 0.3787 REMARK 3 T33: 0.4981 T12: -0.0575 REMARK 3 T13: 0.0225 T23: -0.1444 REMARK 3 L TENSOR REMARK 3 L11: 7.3289 L22: 1.8805 REMARK 3 L33: 3.6535 L12: 2.6013 REMARK 3 L13: -2.0846 L23: 0.0800 REMARK 3 S TENSOR REMARK 3 S11: 0.2752 S12: -0.4431 S13: 0.6791 REMARK 3 S21: 0.0772 S22: 0.0227 S23: -0.0449 REMARK 3 S31: -0.7835 S32: 0.3193 S33: -0.2655 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 429:433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0239 39.1051 -23.4448 REMARK 3 T TENSOR REMARK 3 T11: 0.9765 T22: 0.7554 REMARK 3 T33: 0.9241 T12: -0.3161 REMARK 3 T13: 0.1597 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 6.2880 L22: 5.8099 REMARK 3 L33: 6.9665 L12: -5.6598 REMARK 3 L13: 4.0000 L23: -1.8271 REMARK 3 S TENSOR REMARK 3 S11: 0.2854 S12: 1.3693 S13: 3.1014 REMARK 3 S21: -0.7157 S22: 0.0270 S23: -1.5074 REMARK 3 S31: -0.7356 S32: 1.8553 S33: -0.0638 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 434:470 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5452 15.9622 -30.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.3831 T22: 0.4706 REMARK 3 T33: 0.4669 T12: -0.0242 REMARK 3 T13: 0.0010 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 0.5892 L22: 6.4599 REMARK 3 L33: 5.3407 L12: 0.7267 REMARK 3 L13: 1.2091 L23: 4.7485 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: 0.0732 S13: 0.2178 REMARK 3 S21: -0.0166 S22: 0.1810 S23: -0.2110 REMARK 3 S31: -0.2951 S32: 0.2039 S33: -0.2733 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 471:484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3410 7.7305 -41.3454 REMARK 3 T TENSOR REMARK 3 T11: 0.3987 T22: 0.4207 REMARK 3 T33: 0.4176 T12: 0.0329 REMARK 3 T13: 0.0096 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 5.5629 L22: 6.3165 REMARK 3 L33: 7.3759 L12: 2.1142 REMARK 3 L13: 2.4377 L23: 3.0396 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.1070 S13: 0.4240 REMARK 3 S21: -0.6860 S22: 0.0472 S23: -0.1774 REMARK 3 S31: -0.7977 S32: 0.1739 S33: 0.0069 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 485:489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4315 11.1625 -47.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.6538 T22: 0.5439 REMARK 3 T33: 0.6180 T12: -0.1465 REMARK 3 T13: 0.0313 T23: 0.1314 REMARK 3 L TENSOR REMARK 3 L11: 2.2219 L22: 4.8126 REMARK 3 L33: 2.0995 L12: -0.2627 REMARK 3 L13: -0.0702 L23: 0.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.2892 S12: 0.8797 S13: 0.7681 REMARK 3 S21: -0.9052 S22: -0.2644 S23: -1.6213 REMARK 3 S31: -1.1132 S32: 0.3389 S33: 0.6343 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7636 26.9261 -9.1865 REMARK 3 T TENSOR REMARK 3 T11: 0.6104 T22: 0.7426 REMARK 3 T33: 0.4962 T12: 0.0681 REMARK 3 T13: -0.0139 T23: -0.1359 REMARK 3 L TENSOR REMARK 3 L11: 2.3579 L22: 4.1778 REMARK 3 L33: 2.1419 L12: 2.5187 REMARK 3 L13: -0.9511 L23: -0.3681 REMARK 3 S TENSOR REMARK 3 S11: 0.6734 S12: 0.6744 S13: 0.0437 REMARK 3 S21: 0.0298 S22: 0.4260 S23: -0.2035 REMARK 3 S31: -0.3292 S32: 0.2561 S33: -1.3555 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 6:9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2213 22.9303 -23.2797 REMARK 3 T TENSOR REMARK 3 T11: 0.5450 T22: 0.5720 REMARK 3 T33: 0.4508 T12: -0.0880 REMARK 3 T13: -0.0049 T23: -0.1140 REMARK 3 L TENSOR REMARK 3 L11: 4.9111 L22: 8.3716 REMARK 3 L33: 6.9884 L12: -4.8045 REMARK 3 L13: 2.9703 L23: -5.8102 REMARK 3 S TENSOR REMARK 3 S11: 0.3776 S12: 0.1960 S13: -0.0016 REMARK 3 S21: -0.8625 S22: -0.1972 S23: 0.0873 REMARK 3 S31: 0.0676 S32: 0.3210 S33: -0.3091 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 10:13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7295 31.6392 -36.6285 REMARK 3 T TENSOR REMARK 3 T11: 1.0043 T22: 0.7273 REMARK 3 T33: 0.5901 T12: -0.1601 REMARK 3 T13: 0.0953 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.3152 L22: 2.7805 REMARK 3 L33: 2.4904 L12: 2.5928 REMARK 3 L13: -2.6157 L23: -1.4767 REMARK 3 S TENSOR REMARK 3 S11: -0.2090 S12: 1.4307 S13: 0.7926 REMARK 3 S21: -1.8000 S22: 1.1602 S23: -0.2784 REMARK 3 S31: -0.5766 S32: -0.9979 S33: -1.0065 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6822 24.4071 -33.1117 REMARK 3 T TENSOR REMARK 3 T11: 0.7363 T22: 0.6161 REMARK 3 T33: 0.5353 T12: -0.0750 REMARK 3 T13: 0.0564 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 2.2797 L22: 3.3547 REMARK 3 L33: 5.7416 L12: -2.4187 REMARK 3 L13: 2.1425 L23: -3.6656 REMARK 3 S TENSOR REMARK 3 S11: 0.5086 S12: 0.4075 S13: -0.7622 REMARK 3 S21: 0.0797 S22: 0.0998 S23: 0.2856 REMARK 3 S31: 0.3484 S32: -0.0420 S33: -0.5254 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN C AND RESID 5:9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8081 29.5876 -18.0488 REMARK 3 T TENSOR REMARK 3 T11: 0.6301 T22: 0.5562 REMARK 3 T33: 0.4668 T12: -0.0212 REMARK 3 T13: 0.0224 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 5.4113 L22: 5.5148 REMARK 3 L33: 6.5775 L12: 0.7001 REMARK 3 L13: -2.4793 L23: -1.9359 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: 0.0678 S13: 0.6845 REMARK 3 S21: 0.1572 S22: 0.2593 S23: 0.2167 REMARK 3 S31: -0.7389 S32: 0.3309 S33: -0.3041 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN C AND RESID 10:13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0264 21.6384 -3.5851 REMARK 3 T TENSOR REMARK 3 T11: 0.6870 T22: 1.0103 REMARK 3 T33: 0.5231 T12: 0.0386 REMARK 3 T13: -0.0333 T23: -0.2307 REMARK 3 L TENSOR REMARK 3 L11: 2.4861 L22: 9.8430 REMARK 3 L33: 2.6743 L12: 0.6756 REMARK 3 L13: 2.5586 L23: 0.1263 REMARK 3 S TENSOR REMARK 3 S11: 0.2629 S12: -0.9947 S13: -0.4923 REMARK 3 S21: 0.9603 S22: 1.0879 S23: -0.5235 REMARK 3 S31: -0.0241 S32: 1.2464 S33: -1.4189 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.287 REMARK 200 RESOLUTION RANGE LOW (A) : 27.867 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2710 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.96500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5K5I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.2 M AMMONIUM SULFATE, AND 0.1 M BIS-TRIS HCL, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.13200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.45150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.45150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.06600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.45150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.45150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.19800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.45150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.45150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.06600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.45150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.45150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 129.19800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.13200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 373 REMARK 465 PRO A 374 REMARK 465 LEU A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 384 -168.83 -125.99 REMARK 500 ILE A 411 -62.81 -102.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 384 SG 120.6 REMARK 620 3 HIS A 397 NE2 104.2 98.2 REMARK 620 4 HIS A 401 NE2 112.2 119.7 95.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 409 SG REMARK 620 2 CYS A 412 SG 115.5 REMARK 620 3 HIS A 425 NE2 117.8 98.5 REMARK 620 4 HIS A 430 NE2 112.5 110.0 100.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 442 SG 117.0 REMARK 620 3 HIS A 455 NE2 107.9 103.8 REMARK 620 4 HIS A 460 NE2 101.7 125.7 98.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 469 SG REMARK 620 2 CYS A 472 SG 118.5 REMARK 620 3 HIS A 485 NE2 107.0 101.1 REMARK 620 4 HIS A 489 NE2 104.6 118.5 105.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K5L RELATED DB: PDB REMARK 900 RELATED ID: 5K5I RELATED DB: PDB REMARK 900 RELATED ID: 5K5H RELATED DB: PDB DBREF 5K5J A 378 489 UNP P49711 CTCF_HUMAN 378 489 DBREF 5K5J B 1 13 PDB 5K5J 5K5J 1 13 DBREF 5K5J C 1 13 PDB 5K5J 5K5J 1 13 SEQADV 5K5J GLY A 373 UNP P49711 EXPRESSION TAG SEQADV 5K5J PRO A 374 UNP P49711 EXPRESSION TAG SEQADV 5K5J LEU A 375 UNP P49711 EXPRESSION TAG SEQADV 5K5J GLY A 376 UNP P49711 EXPRESSION TAG SEQADV 5K5J SER A 377 UNP P49711 EXPRESSION TAG SEQRES 1 A 117 GLY PRO LEU GLY SER PRO PHE GLN CYS SER LEU CYS SER SEQRES 2 A 117 TYR ALA SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET SEQRES 3 A 117 ARG THR HIS SER GLY GLU LYS PRO TYR GLU CYS TYR ILE SEQRES 4 A 117 CYS HIS ALA ARG PHE THR GLN SER GLY THR MET LYS MET SEQRES 5 A 117 HIS ILE LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE SEQRES 6 A 117 HIS CYS PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER SEQRES 7 A 117 ASP LEU GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE SEQRES 8 A 117 GLU GLN GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE SEQRES 9 A 117 HIS GLU ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS SEQRES 1 B 13 DC DC DC DT DG DC DT DG DG DC DA DA DC SEQRES 1 C 13 DT DT DG DC DC DA DG DC DA DG DG DG DG HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET SO4 A 505 5 HET ACT A 506 4 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 4 ZN 4(ZN 2+) FORMUL 8 SO4 O4 S 2- FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *29(H2 O) HELIX 1 AA1 ASP A 390 GLY A 403 1 14 HELIX 2 AA2 GLN A 418 THR A 431 1 14 HELIX 3 AA3 ARG A 448 HIS A 460 1 13 HELIX 4 AA4 GLU A 478 HIS A 489 1 12 SHEET 1 AA1 2 PHE A 379 GLN A 380 0 SHEET 2 AA1 2 ALA A 387 SER A 388 -1 O SER A 388 N PHE A 379 SHEET 1 AA2 2 TYR A 407 GLU A 408 0 SHEET 2 AA2 2 ARG A 415 PHE A 416 -1 O PHE A 416 N TYR A 407 SHEET 1 AA3 2 PHE A 437 HIS A 438 0 SHEET 2 AA3 2 VAL A 445 ILE A 446 -1 O ILE A 446 N PHE A 437 SHEET 1 AA4 2 LYS A 467 LYS A 468 0 SHEET 2 AA4 2 VAL A 475 PHE A 476 -1 O PHE A 476 N LYS A 467 LINK SG CYS A 381 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 384 ZN ZN A 501 1555 1555 2.29 LINK NE2 HIS A 397 ZN ZN A 501 1555 1555 2.05 LINK NE2 HIS A 401 ZN ZN A 501 1555 1555 2.01 LINK SG CYS A 409 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 412 ZN ZN A 502 1555 1555 2.27 LINK NE2 HIS A 425 ZN ZN A 502 1555 1555 2.05 LINK NE2 HIS A 430 ZN ZN A 502 1555 1555 2.02 LINK SG CYS A 439 ZN ZN A 503 1555 1555 2.29 LINK SG CYS A 442 ZN ZN A 503 1555 1555 2.24 LINK NE2 HIS A 455 ZN ZN A 503 1555 1555 2.04 LINK NE2 HIS A 460 ZN ZN A 503 1555 1555 2.01 LINK SG CYS A 469 ZN ZN A 504 1555 1555 2.34 LINK SG CYS A 472 ZN ZN A 504 1555 1555 2.25 LINK NE2 HIS A 485 ZN ZN A 504 1555 1555 2.05 LINK NE2 HIS A 489 ZN ZN A 504 1555 1555 2.04 SITE 1 AC1 4 CYS A 381 CYS A 384 HIS A 397 HIS A 401 SITE 1 AC2 4 CYS A 409 CYS A 412 HIS A 425 HIS A 430 SITE 1 AC3 4 CYS A 439 CYS A 442 HIS A 455 HIS A 460 SITE 1 AC4 4 CYS A 469 CYS A 472 HIS A 485 HIS A 489 SITE 1 AC5 6 TYR A 392 ARG A 396 ARG A 399 TYR A 407 SITE 2 AC5 6 GLN A 418 SER A 419 SITE 1 AC6 3 ARG A 479 GLN A 486 HOH A 606 CRYST1 58.903 58.903 172.264 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005805 0.00000