HEADER OXIDOREDUCTASE 16-MAY-16 5JZ6 TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH)OXYGENASE AND TPR DOMAINS TITLE 2 IN COMPLEX WITH MANGANESE AND L-MALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS 2-OXOGLUTARATE DEPENDENT OXYGENASE, ASPARTYL/ASPARAGINYL BETA- KEYWDS 2 HYDROXYLASE, EGF-LIKE DOMAIN HYDROXYLASE, DOUBLE STRANDED BETA- KEYWDS 3 HELIX, TETRATRICOPEPTIDE REPEAT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,I.PFEFFER REVDAT 2 06-NOV-19 5JZ6 1 JRNL REVDAT 1 24-MAY-17 5JZ6 0 JRNL AUTH I.PFEFFER,L.BREWITZ,T.KROJER,S.A.JENSEN,G.T.KOCHAN, JRNL AUTH 2 N.J.KERSHAW,K.S.HEWITSON,L.A.MCNEILL,H.KRAMER,M.MUNZEL, JRNL AUTH 3 R.J.HOPKINSON,U.OPPERMANN,P.A.HANDFORD,M.A.MCDONOUGH, JRNL AUTH 4 C.J.SCHOFIELD JRNL TITL ASPARTATE/ASPARAGINE-BETA-HYDROXYLASE CRYSTAL STRUCTURES JRNL TITL 2 REVEAL AN UNEXPECTED EPIDERMAL GROWTH FACTOR-LIKE DOMAIN JRNL TITL 3 SUBSTRATE DISULFIDE PATTERN. JRNL REF NAT COMMUN V. 10 4910 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31659163 JRNL DOI 10.1038/S41467-019-12711-7 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1624 - 5.6716 1.00 1836 156 0.1962 0.2055 REMARK 3 2 5.6716 - 4.5028 1.00 1724 146 0.1579 0.1846 REMARK 3 3 4.5028 - 3.9340 0.98 1678 143 0.1515 0.1692 REMARK 3 4 3.9340 - 3.5744 1.00 1687 143 0.1597 0.2153 REMARK 3 5 3.5744 - 3.3183 1.00 1681 143 0.1797 0.2070 REMARK 3 6 3.3183 - 3.1227 1.00 1691 143 0.1893 0.2230 REMARK 3 7 3.1227 - 2.9663 1.00 1652 140 0.1921 0.2555 REMARK 3 8 2.9663 - 2.8372 1.00 1691 143 0.2129 0.2482 REMARK 3 9 2.8372 - 2.7280 1.00 1650 141 0.2092 0.2371 REMARK 3 10 2.7280 - 2.6339 1.00 1670 142 0.2189 0.2567 REMARK 3 11 2.6339 - 2.5515 1.00 1674 141 0.2272 0.3011 REMARK 3 12 2.5515 - 2.4786 1.00 1644 139 0.2221 0.2500 REMARK 3 13 2.4786 - 2.4134 1.00 1660 141 0.2338 0.3127 REMARK 3 14 2.4134 - 2.3545 0.99 1634 139 0.2483 0.3206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3573 REMARK 3 ANGLE : 0.634 4817 REMARK 3 CHIRALITY : 0.032 503 REMARK 3 PLANARITY : 0.002 624 REMARK 3 DIHEDRAL : 14.861 2152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5088 -9.8124 69.8123 REMARK 3 T TENSOR REMARK 3 T11: 1.4257 T22: 1.2153 REMARK 3 T33: 1.0211 T12: -0.1334 REMARK 3 T13: -0.4502 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 3.9094 L22: 4.1593 REMARK 3 L33: 4.3753 L12: -0.6260 REMARK 3 L13: -1.0751 L23: 1.0937 REMARK 3 S TENSOR REMARK 3 S11: -0.2737 S12: -1.1767 S13: 0.3364 REMARK 3 S21: 1.7296 S22: 0.3990 S23: -1.0089 REMARK 3 S31: -0.3199 S32: 1.1209 S33: -0.1581 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9344 -7.4765 49.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.5856 T22: 0.2860 REMARK 3 T33: 0.4248 T12: -0.0359 REMARK 3 T13: 0.0086 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.6175 L22: 4.2797 REMARK 3 L33: 3.4615 L12: -0.1179 REMARK 3 L13: 0.3795 L23: -2.3474 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.3817 S13: -0.1510 REMARK 3 S21: 0.8537 S22: 0.0220 S23: -0.2104 REMARK 3 S31: -0.2508 S32: -0.1829 S33: -0.0376 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 501 THROUGH 624 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3300 -3.1070 20.7043 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.2940 REMARK 3 T33: 0.2993 T12: -0.0130 REMARK 3 T13: 0.0098 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.6467 L22: 1.3044 REMARK 3 L33: 2.0719 L12: -0.8888 REMARK 3 L13: -1.2272 L23: 1.1670 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.2545 S13: 0.0740 REMARK 3 S21: 0.0680 S22: 0.0649 S23: -0.0496 REMARK 3 S31: -0.1069 S32: 0.0413 S33: -0.1068 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 625 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5173 -11.8609 14.3332 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.3656 REMARK 3 T33: 0.3355 T12: -0.0246 REMARK 3 T13: 0.0034 T23: -0.0987 REMARK 3 L TENSOR REMARK 3 L11: 3.3943 L22: 1.6219 REMARK 3 L33: 1.8217 L12: -0.0210 REMARK 3 L13: -0.1368 L23: 1.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: 0.3072 S13: -0.3710 REMARK 3 S21: 0.1742 S22: 0.0504 S23: -0.1305 REMARK 3 S31: 0.0844 S32: 0.0464 S33: -0.0708 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM MMT BUFFER (DL-MALIC ACID, MES, REMARK 280 TRIS BASE), 25% PEG1500, 1 MM MNCL2, 2 MM N-OXALYLGLYCINE, 18 MG/ REMARK 280 ML PROTEIN, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.50950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.27050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.32050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.27050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.50950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.32050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 424 CD CE NZ REMARK 470 ARG A 635 CD NE CZ NH1 NH2 REMARK 470 LYS A 697 CG CD CE NZ REMARK 470 GLU A 698 CG CD OE1 OE2 REMARK 470 ASP A 730 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1030 O HOH A 1045 2.15 REMARK 500 NH1 ARG A 661 O LEU A 755 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 361 -71.24 -56.88 REMARK 500 GLN A 373 47.74 -90.70 REMARK 500 LYS A 503 72.65 -104.07 REMARK 500 TYR A 583 51.32 -91.58 REMARK 500 ALA A 705 -121.64 57.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 801 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 87.3 REMARK 620 3 HOH A 977 O 89.2 171.7 REMARK 620 4 LMR A 806 O1A 99.4 88.1 99.8 REMARK 620 5 LMR A 806 O1B 156.2 99.3 86.9 58.4 REMARK 620 6 HOH A1012 O 96.3 91.0 81.9 164.2 106.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 806 DBREF 5JZ6 A 330 758 UNP Q12797 ASPH_HUMAN 330 758 SEQRES 1 A 429 LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE LYS SEQRES 2 A 429 ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG GLY SEQRES 3 A 429 LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU VAL SEQRES 4 A 429 ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY LYS SEQRES 5 A 429 ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SER SEQRES 6 A 429 ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN GLU SEQRES 7 A 429 VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU LYS SEQRES 8 A 429 LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE LEU SEQRES 9 A 429 GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG LEU SEQRES 10 A 429 VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN ASP SEQRES 11 A 429 LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP ASN SEQRES 12 A 429 ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR PRO SEQRES 13 A 429 ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE LEU SEQRES 14 A 429 LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR LEU SEQRES 15 A 429 LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP ASP SEQRES 16 A 429 GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN ARG SEQRES 17 A 429 VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU GLY SEQRES 18 A 429 HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SER SEQRES 19 A 429 LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP SEQRES 20 A 429 THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER SEQRES 21 A 429 LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU SEQRES 22 A 429 ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU SEQRES 23 A 429 ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE SEQRES 24 A 429 THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS SEQRES 25 A 429 LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE SEQRES 26 A 429 PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR SEQRES 27 A 429 SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS THR SEQRES 28 A 429 GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU SEQRES 29 A 429 VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN SEQRES 30 A 429 GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE SEQRES 31 A 429 ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SER SEQRES 32 A 429 SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO SEQRES 33 A 429 GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE HET MN A 801 1 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HET GOL A 805 6 HET LMR A 806 9 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN LMR L-MALATE FORMUL 2 MN MN 2+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 LMR C4 H6 O5 FORMUL 8 HOH *202(H2 O) HELIX 1 AA1 PHE A 337 THR A 340 5 4 HELIX 2 AA2 ILE A 341 GLY A 355 1 15 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 ALA A 409 1 16 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 VAL A 538 1 15 HELIX 13 AB4 GLY A 539 LYS A 541 5 3 HELIX 14 AB5 GLU A 542 ARG A 553 1 12 HELIX 15 AB6 THR A 577 GLY A 582 1 6 HELIX 16 AB7 TYR A 583 ASN A 593 1 11 HELIX 17 AB8 ASN A 593 ALA A 608 1 16 HELIX 18 AB9 LYS A 609 PHE A 612 5 4 HELIX 19 AC1 ASN A 637 LYS A 642 1 6 HELIX 20 AC2 ALA A 644 GLU A 652 1 9 HELIX 21 AC3 PHE A 654 GLY A 659 1 6 HELIX 22 AC4 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.03 LINK NE2 HIS A 679 MN MN A 801 1555 1555 2.28 LINK NE2 HIS A 725 MN MN A 801 1555 1555 2.20 LINK MN MN A 801 O HOH A 977 1555 1555 2.19 LINK MN MN A 801 O1A LMR A 806 1555 1555 2.23 LINK MN MN A 801 O1B LMR A 806 1555 1555 2.24 LINK MN MN A 801 O HOH A1012 1555 1555 1.88 SITE 1 AC1 5 HIS A 679 HIS A 725 LMR A 806 HOH A 977 SITE 2 AC1 5 HOH A1012 SITE 1 AC2 5 GLN A 664 LYS A 666 ARG A 686 ARG A 688 SITE 2 AC2 5 HOH A 977 SITE 1 AC3 5 SER A 455 ASN A 458 ASP A 459 PRO A 520 SITE 2 AC3 5 HOH A 963 SITE 1 AC4 3 VAL A 559 TRP A 560 GOL A 805 SITE 1 AC5 2 TRP A 560 GOL A 804 SITE 1 AC6 11 TRP A 625 SER A 668 MET A 670 HIS A 679 SITE 2 AC6 11 ARG A 688 HIS A 690 HIS A 725 ARG A 735 SITE 3 AC6 11 ILE A 739 MN A 801 HOH A 977 CRYST1 49.019 70.641 172.541 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005796 0.00000