HEADER HYDROLASE 29-DEC-15 5H9W TITLE CRYSTAL STRUCTURE OF REGNASE PIN DOMAIN, FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE ZC3H12A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PIN DOMAIN, UNP RESIDUES 134-339; COMPND 5 SYNONYM: REGNASE-1,MCP-INDUCED PROTEIN 1,ZINC FINGER CCCH DOMAIN- COMPND 6 CONTAINING PROTEIN 12A; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3H12A, MCPIP, MCPIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YOKOGAWA,T.TSUSHIMA,W.ADACHI,N.N.NODA,F.INAGAKI REVDAT 3 08-NOV-23 5H9W 1 REMARK REVDAT 2 19-FEB-20 5H9W 1 REMARK REVDAT 1 16-MAR-16 5H9W 0 JRNL AUTH M.YOKOGAWA,T.TSUSHIMA,N.N.NODA,H.KUMETA,Y.ENOKIZONO, JRNL AUTH 2 K.YAMASHITA,D.M.STANDLEY,O.TAKEUCHI,S.AKIRA,F.INAGAKI JRNL TITL STRUCTURAL BASIS FOR THE REGULATION OF ENZYMATIC ACTIVITY OF JRNL TITL 2 REGNASE-1 BY DOMAIN-DOMAIN INTERACTIONS JRNL REF SCI REP V. 6 22324 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26927947 JRNL DOI 10.1038/SREP22324 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 16057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.21000 REMARK 3 B22 (A**2) : -3.21000 REMARK 3 B33 (A**2) : 10.41000 REMARK 3 B12 (A**2) : -3.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.371 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.815 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2722 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2632 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3677 ; 1.718 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6045 ; 1.155 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;35.651 ;22.662 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;19.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3037 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 3.116 ; 4.012 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 3.115 ; 4.012 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1614 ; 4.688 ; 6.017 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1615 ; 4.687 ; 6.017 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1428 ; 3.676 ; 4.398 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1429 ; 3.675 ; 4.398 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2064 ; 5.617 ; 6.449 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3089 ; 7.402 ;31.827 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3084 ; 7.401 ;31.825 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 134 295 B 134 295 9669 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 295 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : A 501 A 515 REMARK 3 RESIDUE RANGE : B 509 B 518 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2133 46.4856 -10.8473 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.3120 REMARK 3 T33: 0.2191 T12: -0.0312 REMARK 3 T13: -0.0979 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 5.8870 L22: 3.1337 REMARK 3 L33: 2.8897 L12: -0.2963 REMARK 3 L13: 0.6498 L23: 0.5918 REMARK 3 S TENSOR REMARK 3 S11: 0.2362 S12: -0.2788 S13: -0.1322 REMARK 3 S21: -0.0280 S22: -0.0891 S23: -0.1677 REMARK 3 S31: 0.1747 S32: 0.1682 S33: -0.1471 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 295 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0786 47.9781 -15.9622 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.4241 REMARK 3 T33: 0.2350 T12: 0.1797 REMARK 3 T13: -0.0228 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 4.3085 L22: 1.8193 REMARK 3 L33: 3.1283 L12: 0.8950 REMARK 3 L13: 0.4095 L23: 0.4409 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: 0.9185 S13: -0.0683 REMARK 3 S21: -0.2696 S22: -0.0853 S23: 0.0029 REMARK 3 S31: -0.0368 S32: -0.0603 S33: -0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5H9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000216714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 26.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 5H9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M NACL, 100 MM HEPES, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.12433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.24867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.24867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.12433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 130 REMARK 465 PRO A 131 REMARK 465 HIS A 132 REMARK 465 MET A 133 REMARK 465 PRO A 296 REMARK 465 LEU A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 GLU A 300 REMARK 465 HIS A 301 REMARK 465 ARG A 302 REMARK 465 LYS A 303 REMARK 465 GLN A 304 REMARK 465 PRO A 305 REMARK 465 CYS A 306 REMARK 465 PRO A 307 REMARK 465 TYR A 308 REMARK 465 GLY A 309 REMARK 465 LYS A 310 REMARK 465 LYS A 311 REMARK 465 CYS A 312 REMARK 465 THR A 313 REMARK 465 TYR A 314 REMARK 465 GLY A 315 REMARK 465 ILE A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ARG A 319 REMARK 465 PHE A 320 REMARK 465 PHE A 321 REMARK 465 HIS A 322 REMARK 465 PRO A 323 REMARK 465 GLU A 324 REMARK 465 ARG A 325 REMARK 465 PRO A 326 REMARK 465 SER A 327 REMARK 465 ARG A 328 REMARK 465 PRO A 329 REMARK 465 GLN A 330 REMARK 465 ARG A 331 REMARK 465 SER A 332 REMARK 465 VAL A 333 REMARK 465 ALA A 334 REMARK 465 ASP A 335 REMARK 465 GLU A 336 REMARK 465 LEU A 337 REMARK 465 ARG A 338 REMARK 465 ALA A 339 REMARK 465 GLY B 130 REMARK 465 PRO B 131 REMARK 465 HIS B 132 REMARK 465 MET B 133 REMARK 465 PRO B 296 REMARK 465 LEU B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 GLU B 300 REMARK 465 HIS B 301 REMARK 465 ARG B 302 REMARK 465 LYS B 303 REMARK 465 GLN B 304 REMARK 465 PRO B 305 REMARK 465 CYS B 306 REMARK 465 PRO B 307 REMARK 465 TYR B 308 REMARK 465 GLY B 309 REMARK 465 LYS B 310 REMARK 465 LYS B 311 REMARK 465 CYS B 312 REMARK 465 THR B 313 REMARK 465 TYR B 314 REMARK 465 GLY B 315 REMARK 465 ILE B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ARG B 319 REMARK 465 PHE B 320 REMARK 465 PHE B 321 REMARK 465 HIS B 322 REMARK 465 PRO B 323 REMARK 465 GLU B 324 REMARK 465 ARG B 325 REMARK 465 PRO B 326 REMARK 465 SER B 327 REMARK 465 ARG B 328 REMARK 465 PRO B 329 REMARK 465 GLN B 330 REMARK 465 ARG B 331 REMARK 465 SER B 332 REMARK 465 VAL B 333 REMARK 465 ALA B 334 REMARK 465 ASP B 335 REMARK 465 GLU B 336 REMARK 465 LEU B 337 REMARK 465 ARG B 338 REMARK 465 ALA B 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 295 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 512 O HOH B 519 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 183 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 188 76.96 -158.95 REMARK 500 ASN A 271 -112.38 44.49 REMARK 500 ASP B 225 -59.88 -26.69 REMARK 500 ASN B 271 -112.19 46.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 146 O REMARK 620 2 MET A 147 O 84.9 REMARK 620 3 HIS A 149 O 84.2 105.5 REMARK 620 4 ASN A 151 O 175.4 96.5 99.6 REMARK 620 5 VAL A 154 O 84.9 111.1 140.6 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 146 O REMARK 620 2 MET B 147 O 85.3 REMARK 620 3 HIS B 149 O 82.8 103.8 REMARK 620 4 ASN B 151 O 175.2 97.7 100.1 REMARK 620 5 VAL B 154 O 86.4 113.7 139.9 88.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5H9V RELATED DB: PDB DBREF 5H9W A 134 339 UNP Q5D1E7 ZC12A_MOUSE 134 339 DBREF 5H9W B 134 339 UNP Q5D1E7 ZC12A_MOUSE 134 339 SEQADV 5H9W GLY A 130 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W PRO A 131 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W HIS A 132 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W MET A 133 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W GLY B 130 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W PRO B 131 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W HIS B 132 UNP Q5D1E7 EXPRESSION TAG SEQADV 5H9W MET B 133 UNP Q5D1E7 EXPRESSION TAG SEQRES 1 A 210 GLY PRO HIS MET ASP LEU ARG PRO VAL VAL ILE ASP GLY SEQRES 2 A 210 SER ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SEQRES 3 A 210 SER CYS ARG GLY ILE LEU LEU ALA VAL ASN TRP PHE LEU SEQRES 4 A 210 GLU ARG GLY HIS THR ASP ILE THR VAL PHE VAL PRO SER SEQRES 5 A 210 TRP ARG LYS GLU GLN PRO ARG PRO ASP VAL PRO ILE THR SEQRES 6 A 210 ASP GLN HIS ILE LEU ARG GLU LEU GLU LYS LYS LYS ILE SEQRES 7 A 210 LEU VAL PHE THR PRO SER ARG ARG VAL GLY GLY LYS ARG SEQRES 8 A 210 VAL VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA SEQRES 9 A 210 PHE GLU SER ASP GLY VAL VAL VAL SER ASN ASP THR TYR SEQRES 10 A 210 ARG ASP LEU GLN GLY GLU ARG GLN GLU TRP LYS ARG PHE SEQRES 11 A 210 ILE GLU GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP SEQRES 12 A 210 LYS PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY SEQRES 13 A 210 PRO SER LEU ASP ASN PHE LEU ARG LYS LYS PRO LEU PRO SEQRES 14 A 210 SER GLU HIS ARG LYS GLN PRO CYS PRO TYR GLY LYS LYS SEQRES 15 A 210 CYS THR TYR GLY ILE LYS CYS ARG PHE PHE HIS PRO GLU SEQRES 16 A 210 ARG PRO SER ARG PRO GLN ARG SER VAL ALA ASP GLU LEU SEQRES 17 A 210 ARG ALA SEQRES 1 B 210 GLY PRO HIS MET ASP LEU ARG PRO VAL VAL ILE ASP GLY SEQRES 2 B 210 SER ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SEQRES 3 B 210 SER CYS ARG GLY ILE LEU LEU ALA VAL ASN TRP PHE LEU SEQRES 4 B 210 GLU ARG GLY HIS THR ASP ILE THR VAL PHE VAL PRO SER SEQRES 5 B 210 TRP ARG LYS GLU GLN PRO ARG PRO ASP VAL PRO ILE THR SEQRES 6 B 210 ASP GLN HIS ILE LEU ARG GLU LEU GLU LYS LYS LYS ILE SEQRES 7 B 210 LEU VAL PHE THR PRO SER ARG ARG VAL GLY GLY LYS ARG SEQRES 8 B 210 VAL VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA SEQRES 9 B 210 PHE GLU SER ASP GLY VAL VAL VAL SER ASN ASP THR TYR SEQRES 10 B 210 ARG ASP LEU GLN GLY GLU ARG GLN GLU TRP LYS ARG PHE SEQRES 11 B 210 ILE GLU GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP SEQRES 12 B 210 LYS PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY SEQRES 13 B 210 PRO SER LEU ASP ASN PHE LEU ARG LYS LYS PRO LEU PRO SEQRES 14 B 210 SER GLU HIS ARG LYS GLN PRO CYS PRO TYR GLY LYS LYS SEQRES 15 B 210 CYS THR TYR GLY ILE LYS CYS ARG PHE PHE HIS PRO GLU SEQRES 16 B 210 ARG PRO SER ARG PRO GLN ARG SER VAL ALA ASP GLU LEU SEQRES 17 B 210 ARG ALA HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *34(H2 O) HELIX 1 AA1 GLY A 142 HIS A 149 1 8 HELIX 2 AA2 CYS A 157 ARG A 170 1 14 HELIX 3 AA3 TRP A 182 GLU A 185 5 4 HELIX 4 AA4 HIS A 197 LYS A 205 1 9 HELIX 5 AA5 TYR A 224 ASP A 237 1 14 HELIX 6 AA6 TYR A 246 ARG A 253 1 8 HELIX 7 AA7 ARG A 253 ARG A 263 1 11 HELIX 8 AA8 SER A 287 LEU A 292 1 6 HELIX 9 AA9 GLY B 142 HIS B 149 1 8 HELIX 10 AB1 CYS B 157 GLY B 171 1 15 HELIX 11 AB2 TRP B 182 GLU B 185 5 4 HELIX 12 AB3 HIS B 197 LYS B 205 1 9 HELIX 13 AB4 TYR B 224 ASP B 237 1 14 HELIX 14 AB5 TYR B 246 ARG B 253 1 8 HELIX 15 AB6 ARG B 253 ARG B 263 1 11 HELIX 16 AB7 SER B 287 LEU B 292 1 6 SHEET 1 AA1 5 LEU A 208 THR A 211 0 SHEET 2 AA1 5 ILE A 175 PRO A 180 1 N VAL A 177 O VAL A 209 SHEET 3 AA1 5 VAL A 138 ASP A 141 1 N ILE A 140 O THR A 176 SHEET 4 AA1 5 VAL A 239 VAL A 241 1 O VAL A 241 N VAL A 139 SHEET 5 AA1 5 LEU A 264 LEU A 265 1 O LEU A 265 N VAL A 240 SHEET 1 AA2 2 PHE A 155 SER A 156 0 SHEET 2 AA2 2 ILE A 193 THR A 194 1 O THR A 194 N PHE A 155 SHEET 1 AA3 2 SER A 213 VAL A 216 0 SHEET 2 AA3 2 LYS A 219 VAL A 222 -1 O VAL A 221 N ARG A 214 SHEET 1 AA4 2 SER A 268 VAL A 270 0 SHEET 2 AA4 2 LYS A 273 MET A 275 -1 O LYS A 273 N VAL A 270 SHEET 1 AA5 5 LEU B 208 THR B 211 0 SHEET 2 AA5 5 ILE B 175 PRO B 180 1 N VAL B 177 O VAL B 209 SHEET 3 AA5 5 VAL B 138 ASP B 141 1 N ILE B 140 O THR B 176 SHEET 4 AA5 5 VAL B 239 VAL B 241 1 O VAL B 241 N VAL B 139 SHEET 5 AA5 5 LEU B 264 LEU B 265 1 O LEU B 265 N VAL B 240 SHEET 1 AA6 2 PHE B 155 SER B 156 0 SHEET 2 AA6 2 ILE B 193 THR B 194 1 O THR B 194 N PHE B 155 SHEET 1 AA7 2 SER B 213 VAL B 216 0 SHEET 2 AA7 2 LYS B 219 VAL B 222 -1 O VAL B 221 N ARG B 214 SHEET 1 AA8 2 SER B 268 VAL B 270 0 SHEET 2 AA8 2 LYS B 273 MET B 275 -1 O LYS B 273 N VAL B 270 LINK O ALA A 146 NA NA A 401 1555 1555 2.58 LINK O MET A 147 NA NA A 401 1555 1555 2.46 LINK O HIS A 149 NA NA A 401 1555 1555 2.03 LINK O ASN A 151 NA NA A 401 1555 1555 2.22 LINK O VAL A 154 NA NA A 401 1555 1555 2.27 LINK O ALA B 146 NA NA B 401 1555 1555 2.57 LINK O MET B 147 NA NA B 401 1555 1555 2.41 LINK O HIS B 149 NA NA B 401 1555 1555 2.10 LINK O ASN B 151 NA NA B 401 1555 1555 2.24 LINK O VAL B 154 NA NA B 401 1555 1555 2.24 SITE 1 AC1 5 ALA A 146 MET A 147 HIS A 149 ASN A 151 SITE 2 AC1 5 VAL A 154 SITE 1 AC2 5 ALA B 146 MET B 147 HIS B 149 ASN B 151 SITE 2 AC2 5 VAL B 154 CRYST1 113.333 113.333 78.373 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008824 0.005094 0.000000 0.00000 SCALE2 0.000000 0.010189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012759 0.00000