HEADER TRANSCRIPTION 14-OCT-15 5E8B TITLE CRYSTAL STRUCTURE OF THE S. CEREVISIAE RTF1 HISTONE MODIFICATION TITLE 2 DOMAIN MUTANT R126A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE-ASSOCIATED PROTEIN RTF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 74-139; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: RTF1, CSL3, YGL244W, HRA458; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, PAF1, CHROMATIN, RTF1 EXPDTA X-RAY DIFFRACTION AUTHOR A.D.WIER,A.HEROUX,A.P.VANDEMARK REVDAT 3 27-SEP-23 5E8B 1 LINK REVDAT 2 25-JAN-17 5E8B 1 JRNL REVDAT 1 09-NOV-16 5E8B 0 JRNL AUTH S.B.VAN OSS,M.K.SHIRRA,A.R.BATAILLE,A.D.WIER,K.YEN, JRNL AUTH 2 V.VINAYACHANDRAN,I.L.BYEON,C.E.CUCINOTTA,A.HEROUX,J.JEON, JRNL AUTH 3 J.KIM,A.P.VANDEMARK,B.F.PUGH,K.M.ARNDT JRNL TITL THE HISTONE MODIFICATION DOMAIN OF PAF1 COMPLEX SUBUNIT RTF1 JRNL TITL 2 DIRECTLY STIMULATES H2B UBIQUITYLATION THROUGH AN JRNL TITL 3 INTERACTION WITH RAD6. JRNL REF MOL. CELL V. 64 815 2016 JRNL REFN ISSN 1097-4164 JRNL PMID 27840029 JRNL DOI 10.1016/J.MOLCEL.2016.10.008 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4551 - 2.9429 0.98 2617 139 0.1641 0.1779 REMARK 3 2 2.9429 - 2.3362 1.00 2600 136 0.1471 0.2155 REMARK 3 3 2.3362 - 2.0410 1.00 2561 135 0.1193 0.1808 REMARK 3 4 2.0410 - 1.8545 1.00 2574 136 0.1178 0.1998 REMARK 3 5 1.8545 - 1.7216 1.00 2563 135 0.1340 0.2206 REMARK 3 6 1.7216 - 1.6201 1.00 2563 135 0.1297 0.2260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 925 REMARK 3 ANGLE : 0.867 1231 REMARK 3 CHIRALITY : 0.039 118 REMARK 3 PLANARITY : 0.005 168 REMARK 3 DIHEDRAL : 14.803 584 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5E8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 28.451 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EMX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE (PH 4.2), 28% REMARK 280 PEG 300, SILVER BULLETS BIO CONDITION 7 (HAMPTON), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.93400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.09736 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.11467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.93400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.09736 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.11467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.93400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.09736 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.11467 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.93400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.09736 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.11467 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.93400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.09736 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.11467 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.93400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.09736 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.11467 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.19472 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.22933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.19472 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.22933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.19472 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 50.22933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.19472 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.22933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.19472 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 50.22933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.19472 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 50.22933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 325 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 73 REMARK 465 GLU A 74 REMARK 465 ASP A 129 REMARK 465 MET A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 GLN A 133 REMARK 465 GLN A 134 REMARK 465 GLN A 135 REMARK 465 ARG A 136 REMARK 465 ALA A 137 REMARK 465 LYS A 138 REMARK 465 ASN A 139 REMARK 465 SER B 73 REMARK 465 GLU B 74 REMARK 465 GLU B 75 REMARK 465 ARG B 128 REMARK 465 ASP B 129 REMARK 465 MET B 130 REMARK 465 LYS B 131 REMARK 465 GLU B 132 REMARK 465 GLN B 133 REMARK 465 GLN B 134 REMARK 465 GLN B 135 REMARK 465 ARG B 136 REMARK 465 ALA B 137 REMARK 465 LYS B 138 REMARK 465 ASN B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 336 O HOH A 341 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 85 -4.57 -147.74 REMARK 500 ASP A 88 -177.55 -177.52 REMARK 500 GLU B 83 16.96 56.87 REMARK 500 LYS B 85 -1.40 -148.96 REMARK 500 ASP B 88 -176.93 -177.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 OE1 REMARK 620 2 GLU A 93 OE2 139.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 309 O REMARK 620 2 GLU B 100 OE2 174.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 324 O REMARK 620 2 GLN B 118 OE1 98.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EMX RELATED DB: PDB DBREF 5E8B A 74 139 UNP P53064 RTF1_YEAST 74 139 DBREF 5E8B B 74 139 UNP P53064 RTF1_YEAST 74 139 SEQADV 5E8B SER A 73 UNP P53064 EXPRESSION TAG SEQADV 5E8B ALA A 126 UNP P53064 ARG 126 ENGINEERED MUTATION SEQADV 5E8B SER B 73 UNP P53064 EXPRESSION TAG SEQADV 5E8B ALA B 126 UNP P53064 ARG 126 ENGINEERED MUTATION SEQRES 1 A 67 SER GLU GLU GLU ALA ASN PRO PHE PRO LEU GLU GLY LYS SEQRES 2 A 67 TYR LYS ASP GLU SER ASP ARG GLU HIS LEU GLU SER LEU SEQRES 3 A 67 PRO GLU MET GLU ARG GLU THR LEU LEU PHE GLU ARG SER SEQRES 4 A 67 GLN ILE MET GLN LYS TYR GLN GLU ARG LYS LEU PHE ARG SEQRES 5 A 67 ALA ALA GLY ARG ASP MET LYS GLU GLN GLN GLN ARG ALA SEQRES 6 A 67 LYS ASN SEQRES 1 B 67 SER GLU GLU GLU ALA ASN PRO PHE PRO LEU GLU GLY LYS SEQRES 2 B 67 TYR LYS ASP GLU SER ASP ARG GLU HIS LEU GLU SER LEU SEQRES 3 B 67 PRO GLU MET GLU ARG GLU THR LEU LEU PHE GLU ARG SER SEQRES 4 B 67 GLN ILE MET GLN LYS TYR GLN GLU ARG LYS LEU PHE ARG SEQRES 5 B 67 ALA ALA GLY ARG ASP MET LYS GLU GLN GLN GLN ARG ALA SEQRES 6 B 67 LYS ASN HET NA A 201 1 HET BEN B 201 16 HET NA B 202 1 HET NA B 203 1 HETNAM NA SODIUM ION HETNAM BEN BENZAMIDINE FORMUL 3 NA 3(NA 1+) FORMUL 4 BEN C7 H8 N2 FORMUL 7 HOH *81(H2 O) HELIX 1 AA1 ASP A 88 LEU A 98 1 11 HELIX 2 AA2 PRO A 99 GLY A 127 1 29 HELIX 3 AA3 ASP B 88 GLU B 96 1 9 HELIX 4 AA4 PRO B 99 GLY B 127 1 29 LINK OE1 GLU A 89 NA NA A 201 1555 1555 2.23 LINK OE2 GLU A 93 NA NA A 201 1555 1555 2.84 LINK O HOH A 309 NA NA B 202 11565 1555 2.65 LINK O HOH A 324 NA NA B 203 8655 1555 2.80 LINK OE2 GLU B 100 NA NA B 202 1555 16545 2.15 LINK OE1 GLN B 118 NA NA B 203 1555 1555 2.44 SITE 1 AC1 2 GLU A 89 GLU A 93 SITE 1 AC2 8 SER A 90 ASP A 91 HIS A 94 HOH A 304 SITE 2 AC2 8 SER B 90 ASP B 91 HIS B 94 HOH B 307 SITE 1 AC3 6 ARG A 128 HOH A 309 GLU B 96 SER B 97 SITE 2 AC3 6 GLU B 100 GLU B 104 SITE 1 AC4 2 HOH A 324 GLN B 118 CRYST1 93.868 93.868 75.344 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010653 0.006151 0.000000 0.00000 SCALE2 0.000000 0.012301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013272 0.00000