HEADER TRANSFERASE 26-JUL-15 5CVH TITLE CRYSTAL STRUCTURE OF CK2ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-329 AND N-TERMINAL EXTENSION COMPND 5 GSMDIEFDDDADDDGSGSGSGSGS; COMPND 6 SYNONYM: CK II ALPHA; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK2A1, CK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHAT4 KEYWDS CK2ALPHA, CK2A, FRAGMENT BASED DRUG DISCOVERY, HIGH CONCENTRATION KEYWDS 2 SCREENING, SELECTIVE ATP COMPETITIVE INHIBITORS, SURFACE ENTROPHY KEYWDS 3 REDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BREAR,C.DE FUSCO,K.H.GEORGIOU,D.SPRING,M.HYVONEN REVDAT 4 10-JAN-24 5CVH 1 REMARK REVDAT 3 07-OCT-20 5CVH 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN LINK ATOM REVDAT 2 10-MAY-17 5CVH 1 JRNL REVDAT 1 27-JUL-16 5CVH 0 JRNL AUTH P.BREAR,C.DE FUSCO,K.HADJE GEORGIOU,N.J.FRANCIS-NEWTON, JRNL AUTH 2 C.J.STUBBS,H.F.SORE,A.R.VENKITARAMAN,C.ABELL,D.R.SPRING, JRNL AUTH 3 M.HYVONEN JRNL TITL SPECIFIC INHIBITION OF CK2 ALPHA FROM AN ANCHOR OUTSIDE THE JRNL TITL 2 ACTIVE SITE. JRNL REF CHEM SCI V. 7 6839 2016 JRNL REFN ISSN 2041-6520 JRNL PMID 28451126 JRNL DOI 10.1039/C6SC02335E REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 166.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3243 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4178 REMARK 3 BIN R VALUE (WORKING SET) : 0.2568 REMARK 3 BIN FREE R VALUE : 0.2654 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 239 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.79290 REMARK 3 B22 (A**2) : -15.17950 REMARK 3 B33 (A**2) : 10.38660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.322 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.121 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.142 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5813 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7904 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2073 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 144 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 851 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5813 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 0.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 696 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6880 ; 0.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.6608 144.4090 354.4330 REMARK 3 T TENSOR REMARK 3 T11: -0.1599 T22: -0.0371 REMARK 3 T33: -0.1107 T12: -0.0543 REMARK 3 T13: 0.0016 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.5879 L22: 0.7778 REMARK 3 L33: 1.3087 L12: 0.1899 REMARK 3 L13: 0.3014 L23: -0.3397 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.2070 S13: 0.0901 REMARK 3 S21: 0.0450 S22: -0.1116 S23: 0.0262 REMARK 3 S31: 0.0037 S32: -0.0096 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.4896 155.5820 394.9980 REMARK 3 T TENSOR REMARK 3 T11: -0.1185 T22: 0.2284 REMARK 3 T33: -0.2366 T12: 0.0041 REMARK 3 T13: 0.0381 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 2.4879 L22: 0.8640 REMARK 3 L33: 2.6348 L12: 0.4344 REMARK 3 L13: 1.3306 L23: 0.4228 REMARK 3 S TENSOR REMARK 3 S11: -0.2221 S12: -0.7611 S13: 0.0511 REMARK 3 S21: -0.1653 S22: 0.0711 S23: 0.0032 REMARK 3 S31: 0.0324 S32: -0.7135 S33: 0.1510 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9188 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64008 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.848 REMARK 200 RESOLUTION RANGE LOW (A) : 166.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.85200 REMARK 200 R SYM FOR SHELL (I) : 0.85200 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 107MM MES PH 6.5, 29% GLYCEROL REMARK 280 ETHOXYLATE, 1 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 166.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.24750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.34500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.24750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.34500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 166.55000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.24750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.34500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 166.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.24750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.34500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 MET A -20 REMARK 465 ASP A -19 REMARK 465 ILE A -18 REMARK 465 GLU A -17 REMARK 465 PHE A -16 REMARK 465 ASP A -15 REMARK 465 ASP A -14 REMARK 465 ASP A -13 REMARK 465 ALA A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 ASP A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 LYS A 329 REMARK 465 GLY B -22 REMARK 465 SER B -21 REMARK 465 MET B -20 REMARK 465 ASP B -19 REMARK 465 ILE B -18 REMARK 465 GLU B -17 REMARK 465 PHE B -16 REMARK 465 ASP B -15 REMARK 465 ASP B -14 REMARK 465 ASP B -13 REMARK 465 ALA B -12 REMARK 465 ASP B -11 REMARK 465 ASP B -10 REMARK 465 ASP B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 VAL B 328 REMARK 465 LYS B 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 119 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 502 4597 0.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 231 C - N - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 72 95.33 -60.93 REMARK 500 ASP A 156 42.49 -148.82 REMARK 500 ASP A 175 75.34 56.89 REMARK 500 ALA A 193 175.04 62.87 REMARK 500 ASP A 210 -157.82 -151.54 REMARK 500 HIS A 234 73.11 -101.87 REMARK 500 ASP B 156 41.47 -149.03 REMARK 500 ASP B 175 76.34 55.50 REMARK 500 ALA B 193 174.17 63.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 161 OD1 REMARK 620 2 ASP A 175 OD2 85.5 REMARK 620 3 ADP A 401 O1B 165.9 82.1 REMARK 620 4 ADP A 401 O1A 90.1 85.7 82.3 REMARK 620 5 HOH A 579 O 96.8 80.4 87.7 163.9 REMARK 620 6 HOH A 587 O 93.6 177.5 98.5 91.9 102.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 161 OD1 REMARK 620 2 ASP B 175 OD2 87.0 REMARK 620 3 ADP B 401 O3B 170.7 84.3 REMARK 620 4 ADP B 401 O2A 103.1 74.6 71.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 DBREF 5CVH A 2 329 UNP P68400 CSK21_HUMAN 2 329 DBREF 5CVH B 2 329 UNP P68400 CSK21_HUMAN 2 329 SEQADV 5CVH GLY A -22 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A -21 UNP P68400 EXPRESSION TAG SEQADV 5CVH MET A -20 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -19 UNP P68400 EXPRESSION TAG SEQADV 5CVH ILE A -18 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLU A -17 UNP P68400 EXPRESSION TAG SEQADV 5CVH PHE A -16 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -15 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -14 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -13 UNP P68400 EXPRESSION TAG SEQADV 5CVH ALA A -12 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -11 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -10 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP A -9 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY A -8 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A -7 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY A -6 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A -5 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY A -4 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A -3 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY A -2 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A -1 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY A 0 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A 1 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER A 21 UNP P68400 ARG 21 ENGINEERED MUTATION SEQADV 5CVH GLY B -22 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B -21 UNP P68400 EXPRESSION TAG SEQADV 5CVH MET B -20 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -19 UNP P68400 EXPRESSION TAG SEQADV 5CVH ILE B -18 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLU B -17 UNP P68400 EXPRESSION TAG SEQADV 5CVH PHE B -16 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -15 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -14 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -13 UNP P68400 EXPRESSION TAG SEQADV 5CVH ALA B -12 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -11 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -10 UNP P68400 EXPRESSION TAG SEQADV 5CVH ASP B -9 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY B -8 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B -7 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY B -6 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B -5 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY B -4 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B -3 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY B -2 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B -1 UNP P68400 EXPRESSION TAG SEQADV 5CVH GLY B 0 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B 1 UNP P68400 EXPRESSION TAG SEQADV 5CVH SER B 21 UNP P68400 ARG 21 ENGINEERED MUTATION SEQRES 1 A 352 GLY SER MET ASP ILE GLU PHE ASP ASP ASP ALA ASP ASP SEQRES 2 A 352 ASP GLY SER GLY SER GLY SER GLY SER GLY SER SER GLY SEQRES 3 A 352 PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP VAL ASN SEQRES 4 A 352 THR HIS ARG PRO SER GLU TYR TRP ASP TYR GLU SER HIS SEQRES 5 A 352 VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN LEU VAL SEQRES 6 A 352 ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL PHE GLU SEQRES 7 A 352 ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL VAL LYS SEQRES 8 A 352 ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU SEQRES 9 A 352 ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO ASN ILE SEQRES 10 A 352 ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SER ARG SEQRES 11 A 352 THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN THR ASP SEQRES 12 A 352 PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR ASP ILE SEQRES 13 A 352 ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU ASP TYR SEQRES 14 A 352 CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL LYS PRO SEQRES 15 A 352 HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS LEU ARG SEQRES 16 A 352 LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY SEQRES 17 A 352 GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS SEQRES 18 A 352 GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR ASP TYR SEQRES 19 A 352 SER LEU ASP MET TRP SER LEU GLY CYS MET LEU ALA SER SEQRES 20 A 352 MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY HIS ASP SEQRES 21 A 352 ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL LEU GLY SEQRES 22 A 352 THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR ASN ILE SEQRES 23 A 352 GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY ARG HIS SEQRES 24 A 352 SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER GLU ASN SEQRES 25 A 352 GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE LEU ASP SEQRES 26 A 352 LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU THR ALA SEQRES 27 A 352 ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR VAL VAL SEQRES 28 A 352 LYS SEQRES 1 B 352 GLY SER MET ASP ILE GLU PHE ASP ASP ASP ALA ASP ASP SEQRES 2 B 352 ASP GLY SER GLY SER GLY SER GLY SER GLY SER SER GLY SEQRES 3 B 352 PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP VAL ASN SEQRES 4 B 352 THR HIS ARG PRO SER GLU TYR TRP ASP TYR GLU SER HIS SEQRES 5 B 352 VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN LEU VAL SEQRES 6 B 352 ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL PHE GLU SEQRES 7 B 352 ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL VAL LYS SEQRES 8 B 352 ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU SEQRES 9 B 352 ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO ASN ILE SEQRES 10 B 352 ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SER ARG SEQRES 11 B 352 THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN THR ASP SEQRES 12 B 352 PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR ASP ILE SEQRES 13 B 352 ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU ASP TYR SEQRES 14 B 352 CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL LYS PRO SEQRES 15 B 352 HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS LEU ARG SEQRES 16 B 352 LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY SEQRES 17 B 352 GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS SEQRES 18 B 352 GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR ASP TYR SEQRES 19 B 352 SER LEU ASP MET TRP SER LEU GLY CYS MET LEU ALA SER SEQRES 20 B 352 MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY HIS ASP SEQRES 21 B 352 ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL LEU GLY SEQRES 22 B 352 THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR ASN ILE SEQRES 23 B 352 GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY ARG HIS SEQRES 24 B 352 SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER GLU ASN SEQRES 25 B 352 GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE LEU ASP SEQRES 26 B 352 LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU THR ALA SEQRES 27 B 352 ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR VAL VAL SEQRES 28 B 352 LYS HET ADP A 401 27 HET IHP A 402 36 HET MG A 403 1 HET ACT A 404 4 HET ADP B 401 27 HET IHP B 402 36 HET MG B 403 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 IHP 2(C6 H18 O24 P6) FORMUL 5 MG 2(MG 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 10 HOH *220(H2 O) HELIX 1 AA1 PRO A 20 ASP A 25 1 6 HELIX 2 AA2 TYR A 26 HIS A 29 5 4 HELIX 3 AA3 LYS A 74 ARG A 89 1 16 HELIX 4 AA4 ASP A 120 TYR A 125 1 6 HELIX 5 AA5 GLN A 126 LEU A 128 5 3 HELIX 6 AA6 THR A 129 MET A 150 1 22 HELIX 7 AA7 LYS A 158 HIS A 160 5 3 HELIX 8 AA8 SER A 194 LYS A 198 5 5 HELIX 9 AA9 GLY A 199 VAL A 204 1 6 HELIX 10 AB1 TYR A 211 ARG A 228 1 18 HELIX 11 AB2 ASP A 237 GLY A 250 1 14 HELIX 12 AB3 GLY A 250 TYR A 261 1 12 HELIX 13 AB4 ASP A 266 ASN A 270 5 5 HELIX 14 AB5 ARG A 280 VAL A 285 5 6 HELIX 15 AB6 ASN A 289 VAL A 293 5 5 HELIX 16 AB7 SER A 294 LEU A 305 1 12 HELIX 17 AB8 ASP A 308 ARG A 312 5 5 HELIX 18 AB9 THR A 314 GLU A 320 1 7 HELIX 19 AC1 HIS A 321 TYR A 325 5 5 HELIX 20 AC2 PRO B 20 ASP B 25 1 6 HELIX 21 AC3 TYR B 26 HIS B 29 5 4 HELIX 22 AC4 LYS B 74 ARG B 89 1 16 HELIX 23 AC5 ASP B 120 TYR B 125 1 6 HELIX 24 AC6 GLN B 126 LEU B 128 5 3 HELIX 25 AC7 THR B 129 MET B 150 1 22 HELIX 26 AC8 LYS B 158 HIS B 160 5 3 HELIX 27 AC9 SER B 194 LYS B 198 5 5 HELIX 28 AD1 GLY B 199 VAL B 204 1 6 HELIX 29 AD2 TYR B 211 ARG B 228 1 18 HELIX 30 AD3 ASP B 237 GLY B 250 1 14 HELIX 31 AD4 GLY B 250 TYR B 261 1 12 HELIX 32 AD5 ASP B 266 ASN B 270 5 5 HELIX 33 AD6 ARG B 280 VAL B 285 5 6 HELIX 34 AD7 ASN B 289 VAL B 293 5 5 HELIX 35 AD8 SER B 294 LYS B 303 1 10 HELIX 36 AD9 THR B 314 GLU B 320 1 7 HELIX 37 AE1 HIS B 321 TYR B 325 5 5 SHEET 1 AA1 6 GLY A 34 ASN A 35 0 SHEET 2 AA1 6 LEU A 97 LYS A 102 1 O ILE A 100 N GLY A 34 SHEET 3 AA1 6 PRO A 109 GLU A 114 -1 O VAL A 112 N ASP A 99 SHEET 4 AA1 6 LYS A 64 LEU A 70 -1 N LYS A 68 O LEU A 111 SHEET 5 AA1 6 SER A 51 ASN A 58 -1 N ALA A 56 O VAL A 65 SHEET 6 AA1 6 TYR A 39 GLY A 48 -1 N ARG A 43 O GLU A 55 SHEET 1 AA2 2 ILE A 152 MET A 153 0 SHEET 2 AA2 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 AA3 2 VAL A 162 ASP A 165 0 SHEET 2 AA3 2 LYS A 170 LEU A 173 -1 O LYS A 170 N ASP A 165 SHEET 1 AA4 6 GLY B 34 ASN B 35 0 SHEET 2 AA4 6 LEU B 97 LYS B 102 1 O ILE B 100 N GLY B 34 SHEET 3 AA4 6 PRO B 109 GLU B 114 -1 O VAL B 112 N ASP B 99 SHEET 4 AA4 6 LYS B 64 LEU B 70 -1 N LYS B 68 O LEU B 111 SHEET 5 AA4 6 SER B 51 ASN B 58 -1 N PHE B 54 O VAL B 67 SHEET 6 AA4 6 TYR B 39 ARG B 47 -1 N VAL B 42 O GLU B 55 SHEET 1 AA5 2 ILE B 152 MET B 153 0 SHEET 2 AA5 2 GLU B 180 PHE B 181 -1 O GLU B 180 N MET B 153 SHEET 1 AA6 2 VAL B 162 ASP B 165 0 SHEET 2 AA6 2 LYS B 170 LEU B 173 -1 O LYS B 170 N ASP B 165 LINK OD1 ASN A 161 MG MG A 403 1555 1555 2.44 LINK OD2 ASP A 175 MG MG A 403 1555 1555 2.26 LINK O1B ADP A 401 MG MG A 403 1555 1555 2.60 LINK O1A ADP A 401 MG MG A 403 1555 1555 2.61 LINK MG MG A 403 O HOH A 579 1555 1555 2.89 LINK MG MG A 403 O HOH A 587 1555 1555 2.01 LINK OD1 ASN B 161 MG MG B 403 1555 1555 2.33 LINK OD2 ASP B 175 MG MG B 403 1555 1555 2.39 LINK O3B ADP B 401 MG MG B 403 1555 1555 2.70 LINK O2A ADP B 401 MG MG B 403 1555 1555 2.67 CISPEP 1 GLU A 230 PRO A 231 0 -6.23 CISPEP 2 GLU B 230 PRO B 231 0 -1.63 SITE 1 AC1 19 ARG A 47 GLY A 48 TYR A 50 SER A 51 SITE 2 AC1 19 VAL A 53 VAL A 66 LYS A 68 ILE A 95 SITE 3 AC1 19 GLU A 114 VAL A 116 HIS A 160 ASN A 161 SITE 4 AC1 19 MET A 163 ILE A 174 ASP A 175 MG A 403 SITE 5 AC1 19 HOH A 503 HOH A 547 HOH A 587 SITE 1 AC2 3 HIS A 234 HIS A 236 ARG A 244 SITE 1 AC3 5 ASN A 161 ASP A 175 ADP A 401 HOH A 579 SITE 2 AC3 5 HOH A 587 SITE 1 AC4 3 ARG A 80 ARG A 155 HOH A 599 SITE 1 AC5 11 GLY B 48 LYS B 49 SER B 51 VAL B 53 SITE 2 AC5 11 VAL B 66 LYS B 68 ILE B 95 GLU B 114 SITE 3 AC5 11 VAL B 116 ASP B 175 MG B 403 SITE 1 AC6 2 HIS B 234 HIS B 236 SITE 1 AC7 3 ASN B 161 ASP B 175 ADP B 401 CRYST1 64.495 68.690 333.100 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003002 0.00000