HEADER SIGNALING PROTEIN 05-MAY-15 4ZNX TITLE CRYSTAL STRUCTURE OF THE FYN-SH3 DOMAIN IN COMPLEX WITH THE HIGH TITLE 2 AFFINITY PEPTIDE APP12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SH3 DOMAIN, UNP RESIDUES 84-141; COMPND 5 SYNONYM: PROTO-ONCOGENE SYN,PROTO-ONCOGENE C-FYN,SRC-LIKE KINASE,SLK, COMPND 6 P59-FYN; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: APP12; COMPND 11 CHAIN: E, F, G, H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS BETA SHANDWICH, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 4 10-JAN-24 4ZNX 1 REMARK REVDAT 3 28-SEP-16 4ZNX 1 JRNL REVDAT 2 14-SEP-16 4ZNX 1 JRNL REVDAT 1 29-JUN-16 4ZNX 0 JRNL AUTH A.CAMARA-ARTIGAS,E.ORTIZ-SALMERON,M.ANDUJAR-SANCHEZ, JRNL AUTH 2 J.BACARIZO,J.M.MARTIN-GARCIA JRNL TITL THE ROLE OF WATER MOLECULES IN THE BINDING OF CLASS I AND II JRNL TITL 2 PEPTIDES TO THE SH3 DOMAIN OF THE FYN TYROSINE KINASE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 707 2016 JRNL REFN ESSN 2053-230X JRNL PMID 27599862 JRNL DOI 10.1107/S2053230X16012310 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 38671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8580 - 5.0358 0.99 2697 133 0.2015 0.2258 REMARK 3 2 5.0358 - 4.0078 0.99 2638 159 0.1309 0.1779 REMARK 3 3 4.0078 - 3.5044 1.00 2709 153 0.1440 0.1671 REMARK 3 4 3.5044 - 3.1854 1.00 2678 154 0.1551 0.2254 REMARK 3 5 3.1854 - 2.9579 0.99 2697 171 0.1844 0.2358 REMARK 3 6 2.9579 - 2.7840 1.00 2714 146 0.1907 0.2560 REMARK 3 7 2.7840 - 2.6449 0.99 2629 172 0.1988 0.2590 REMARK 3 8 2.6449 - 2.5300 0.99 2708 182 0.2068 0.2606 REMARK 3 9 2.5300 - 2.4328 0.99 2626 139 0.2215 0.2719 REMARK 3 10 2.4328 - 2.3490 0.99 2796 114 0.2309 0.2701 REMARK 3 11 2.3490 - 2.2756 0.99 2652 118 0.2310 0.2647 REMARK 3 12 2.2756 - 2.2106 0.96 2630 121 0.2517 0.2864 REMARK 3 13 2.2106 - 2.1525 0.88 2373 128 0.2809 0.3176 REMARK 3 14 2.1525 - 2.1001 0.79 2146 88 0.3043 0.4185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2127 REMARK 3 ANGLE : 1.181 2915 REMARK 3 CHIRALITY : 0.053 310 REMARK 3 PLANARITY : 0.006 381 REMARK 3 DIHEDRAL : 12.228 741 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6582 -31.5803 -39.6994 REMARK 3 T TENSOR REMARK 3 T11: 0.4382 T22: 0.5495 REMARK 3 T33: 0.5987 T12: 0.0050 REMARK 3 T13: -0.0710 T23: 0.1107 REMARK 3 L TENSOR REMARK 3 L11: 0.0359 L22: -0.0082 REMARK 3 L33: 0.3351 L12: -0.0201 REMARK 3 L13: 0.1043 L23: -0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.6942 S12: -0.6688 S13: 0.2106 REMARK 3 S21: 0.9123 S22: -0.9045 S23: -0.6077 REMARK 3 S31: -0.0294 S32: -0.3540 S33: -0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8630 -33.9385 -49.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.5919 REMARK 3 T33: 0.6077 T12: -0.0449 REMARK 3 T13: -0.0086 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.4780 L22: 1.6310 REMARK 3 L33: 1.2609 L12: 0.7009 REMARK 3 L13: 0.4596 L23: -0.9537 REMARK 3 S TENSOR REMARK 3 S11: -0.2040 S12: -0.1749 S13: -0.3870 REMARK 3 S21: -0.5376 S22: 0.1153 S23: 0.5457 REMARK 3 S31: 0.3366 S32: -0.3227 S33: -0.0017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7004 -36.3618 -44.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.6394 T22: 0.5720 REMARK 3 T33: 0.6320 T12: -0.0757 REMARK 3 T13: 0.0916 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 0.4476 L22: 0.2876 REMARK 3 L33: 0.4790 L12: 0.0073 REMARK 3 L13: 0.4822 L23: -0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.2682 S12: -0.0893 S13: -0.4805 REMARK 3 S21: 0.3541 S22: -0.2604 S23: 0.1470 REMARK 3 S31: 0.8013 S32: -1.2431 S33: -0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3111 -32.9466 -48.5311 REMARK 3 T TENSOR REMARK 3 T11: 0.4103 T22: 0.4842 REMARK 3 T33: 0.5329 T12: 0.0250 REMARK 3 T13: 0.0302 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.0191 L22: 2.2593 REMARK 3 L33: 1.6009 L12: -0.5244 REMARK 3 L13: 1.3609 L23: 1.2888 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: -0.0996 S13: -0.0904 REMARK 3 S21: -0.3247 S22: -0.0119 S23: -0.4928 REMARK 3 S31: 0.2393 S32: 0.1427 S33: -0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0605 -33.6147 -45.3386 REMARK 3 T TENSOR REMARK 3 T11: 0.5114 T22: 0.4530 REMARK 3 T33: 0.5110 T12: 0.0367 REMARK 3 T13: -0.0099 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.8621 L22: 2.3022 REMARK 3 L33: 1.3295 L12: 1.4973 REMARK 3 L13: 1.1696 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: -0.2521 S13: -0.4011 REMARK 3 S21: -0.1636 S22: 0.0112 S23: -0.7649 REMARK 3 S31: 0.7760 S32: -0.0470 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2341 -8.2799 -38.8092 REMARK 3 T TENSOR REMARK 3 T11: 0.4234 T22: 0.4826 REMARK 3 T33: 0.5174 T12: -0.0542 REMARK 3 T13: -0.0250 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.6850 L22: 0.5231 REMARK 3 L33: 1.3479 L12: -0.4405 REMARK 3 L13: -0.4302 L23: 0.7001 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.1009 S13: 0.4353 REMARK 3 S21: 0.1532 S22: -0.1407 S23: 0.4980 REMARK 3 S31: -0.7660 S32: -0.0318 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7849 -17.4482 -34.0244 REMARK 3 T TENSOR REMARK 3 T11: 0.5753 T22: 0.6116 REMARK 3 T33: 0.5002 T12: -0.0645 REMARK 3 T13: 0.0835 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.3829 L22: 0.9214 REMARK 3 L33: 0.8254 L12: 0.6226 REMARK 3 L13: -0.3748 L23: -0.6785 REMARK 3 S TENSOR REMARK 3 S11: 0.3507 S12: -0.6809 S13: -0.4190 REMARK 3 S21: -0.0649 S22: -0.2116 S23: 0.2656 REMARK 3 S31: -0.0287 S32: 0.4462 S33: -0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9529 -8.9024 -39.8815 REMARK 3 T TENSOR REMARK 3 T11: 0.5207 T22: 0.5974 REMARK 3 T33: 0.5022 T12: -0.0753 REMARK 3 T13: 0.0419 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 0.8949 L22: 1.0524 REMARK 3 L33: 1.8470 L12: 0.4103 REMARK 3 L13: 0.1178 L23: -0.5012 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0732 S13: -0.2106 REMARK 3 S21: -0.3595 S22: -0.1855 S23: 0.2505 REMARK 3 S31: -0.3687 S32: -0.1978 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4300 -11.3892 -35.9884 REMARK 3 T TENSOR REMARK 3 T11: 0.5514 T22: 0.5590 REMARK 3 T33: 0.5463 T12: -0.0098 REMARK 3 T13: -0.0813 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.9531 L22: 1.5465 REMARK 3 L33: 1.2009 L12: 1.2014 REMARK 3 L13: -0.8883 L23: -0.9744 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.3957 S13: 0.0528 REMARK 3 S21: 0.8403 S22: 0.1557 S23: 0.0212 REMARK 3 S31: -0.0478 S32: 0.4741 S33: 0.0009 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4516 -7.2950 -43.5762 REMARK 3 T TENSOR REMARK 3 T11: 0.5885 T22: 0.4650 REMARK 3 T33: 0.5886 T12: -0.1053 REMARK 3 T13: 0.0249 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 0.1591 L22: 0.0520 REMARK 3 L33: 0.9214 L12: -0.0528 REMARK 3 L13: 0.0605 L23: -0.1967 REMARK 3 S TENSOR REMARK 3 S11: -0.2389 S12: 0.0051 S13: 0.7987 REMARK 3 S21: 0.4867 S22: 0.3279 S23: 0.8448 REMARK 3 S31: -0.8290 S32: 0.1496 S33: 0.0027 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 86 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5859 -1.0546 -56.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.6780 T22: 0.5525 REMARK 3 T33: 0.5702 T12: 0.0315 REMARK 3 T13: -0.0483 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.8892 L22: 2.6727 REMARK 3 L33: 1.9058 L12: -0.1629 REMARK 3 L13: -1.1955 L23: -0.0989 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.0147 S13: 0.4834 REMARK 3 S21: 0.2159 S22: 0.1086 S23: 0.2005 REMARK 3 S31: -0.4380 S32: -0.3027 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 105 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8859 -2.6104 -61.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.6440 T22: 0.5788 REMARK 3 T33: 0.5355 T12: -0.0625 REMARK 3 T13: 0.0231 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 0.7504 L22: 2.3883 REMARK 3 L33: 1.7640 L12: -0.0421 REMARK 3 L13: 0.1533 L23: 0.6875 REMARK 3 S TENSOR REMARK 3 S11: 0.4518 S12: -0.2049 S13: -0.3513 REMARK 3 S21: -0.4419 S22: -0.2846 S23: -0.1608 REMARK 3 S31: -0.4939 S32: 0.2953 S33: 0.0009 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 119 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0542 -1.3281 -60.3923 REMARK 3 T TENSOR REMARK 3 T11: 0.6328 T22: 0.4951 REMARK 3 T33: 0.5233 T12: -0.0209 REMARK 3 T13: -0.0675 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 1.2731 L22: 2.6092 REMARK 3 L33: 2.6597 L12: -1.8465 REMARK 3 L13: -0.9114 L23: 0.8315 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: 0.0404 S13: 0.3742 REMARK 3 S21: -0.0848 S22: -0.1607 S23: -0.3285 REMARK 3 S31: -0.6802 S32: -0.0669 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 85 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9924 -32.2420 -66.6090 REMARK 3 T TENSOR REMARK 3 T11: 0.4939 T22: 0.5503 REMARK 3 T33: 0.5683 T12: -0.0393 REMARK 3 T13: -0.0084 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 0.4928 L22: 0.4441 REMARK 3 L33: 0.5032 L12: 0.3491 REMARK 3 L13: 0.3848 L23: 0.2667 REMARK 3 S TENSOR REMARK 3 S11: 0.5997 S12: 0.7412 S13: -0.1713 REMARK 3 S21: -0.0018 S22: -0.2813 S23: 0.0203 REMARK 3 S31: 0.6249 S32: 0.6281 S33: 0.0009 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 90 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8794 -21.2072 -67.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.6866 T22: 0.6240 REMARK 3 T33: 0.6352 T12: -0.0109 REMARK 3 T13: -0.1221 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 2.2302 L22: 1.0668 REMARK 3 L33: 1.4961 L12: -0.5100 REMARK 3 L13: 0.9126 L23: -0.3065 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.4868 S13: 0.2137 REMARK 3 S21: -0.3375 S22: -0.2593 S23: 0.7100 REMARK 3 S31: -0.9824 S32: -0.0831 S33: 0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 108 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3452 -24.9196 -68.7891 REMARK 3 T TENSOR REMARK 3 T11: 0.6825 T22: 0.5290 REMARK 3 T33: 0.4607 T12: -0.0203 REMARK 3 T13: -0.0278 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 2.4324 L22: 4.1234 REMARK 3 L33: 2.8331 L12: -1.9043 REMARK 3 L13: 0.6173 L23: 2.2506 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.4852 S13: -0.0392 REMARK 3 S21: -0.8417 S22: -0.0417 S23: 0.1674 REMARK 3 S31: -0.1047 S32: 0.3982 S33: 0.0014 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2295 -26.1836 -56.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.4221 T22: 0.4336 REMARK 3 T33: 0.3989 T12: -0.0020 REMARK 3 T13: 0.0113 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.5037 L22: 2.7469 REMARK 3 L33: 2.2843 L12: 0.6614 REMARK 3 L13: 2.3986 L23: 0.6391 REMARK 3 S TENSOR REMARK 3 S11: -0.2471 S12: -0.1225 S13: 0.3127 REMARK 3 S21: -0.2920 S22: 0.6176 S23: -0.2803 REMARK 3 S31: 0.8745 S32: 0.5473 S33: -0.0021 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5685 -20.4513 -45.3693 REMARK 3 T TENSOR REMARK 3 T11: 0.3832 T22: 0.4188 REMARK 3 T33: 0.4919 T12: -0.0373 REMARK 3 T13: -0.0227 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.6838 L22: 4.5143 REMARK 3 L33: 3.2476 L12: 1.3804 REMARK 3 L13: 1.8691 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.4906 S12: 0.3027 S13: 0.2499 REMARK 3 S21: 0.2149 S22: -0.3515 S23: -1.1040 REMARK 3 S31: -0.3312 S32: 0.1402 S33: 0.0195 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7456 -9.2893 -50.9646 REMARK 3 T TENSOR REMARK 3 T11: 0.5721 T22: 0.5146 REMARK 3 T33: 0.4472 T12: -0.0733 REMARK 3 T13: -0.0575 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.1004 L22: 1.1151 REMARK 3 L33: 1.4589 L12: -0.2348 REMARK 3 L13: 0.0667 L23: -1.1162 REMARK 3 S TENSOR REMARK 3 S11: 0.1359 S12: 0.2738 S13: 0.3198 REMARK 3 S21: -0.3071 S22: -0.1604 S23: 0.2638 REMARK 3 S31: -0.2886 S32: -0.0137 S33: -0.0007 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1003 -15.1330 -60.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.6033 T22: 0.4214 REMARK 3 T33: 0.4983 T12: -0.0470 REMARK 3 T13: 0.0562 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.4864 L22: 2.0424 REMARK 3 L33: 1.9548 L12: -0.8984 REMARK 3 L13: 1.1510 L23: 0.5434 REMARK 3 S TENSOR REMARK 3 S11: -0.3777 S12: -0.2337 S13: 0.4639 REMARK 3 S21: -1.4907 S22: 0.3144 S23: 0.0596 REMARK 3 S31: 0.2067 S32: -0.1137 S33: -0.0045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1, AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UA6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.33200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 84 REMARK 465 THR B 85 REMARK 465 VAL C 84 REMARK 465 THR C 85 REMARK 465 VAL D 84 REMARK 465 ARG E 11 REMARK 465 LEU E 12 REMARK 465 ARG F 11 REMARK 465 LEU F 12 REMARK 465 PRO G 10 REMARK 465 ARG G 11 REMARK 465 LEU G 12 REMARK 465 ARG H 11 REMARK 465 LEU H 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 84 CG1 CG2 REMARK 470 THR A 85 OG1 CG2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 HIS B 104 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 GLU C 94 CG CD OE1 OE2 REMARK 470 GLU C 98 CG CD OE1 OE2 REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 GLU C 129 CG CD OE1 OE2 REMARK 470 VAL C 141 CG1 CG2 REMARK 470 GLU D 98 CG CD OE1 OE2 REMARK 470 HIS D 104 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 105 CG CD CE NZ REMARK 470 GLU D 129 CG CD OE1 OE2 REMARK 470 ARG G 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 9 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 113 118.73 -161.71 REMARK 500 ASN C 113 114.55 -160.44 REMARK 500 ASN D 113 115.01 -161.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EIK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN FYN SH3 DOMAIN IN COMPLEX WITH THE REMARK 900 SYNTHETIC PEPTIDE VSL12 REMARK 900 RELATED ID: 3UA6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN FYN SH3 DOMAIN REMARK 900 RELATED ID: 3UA7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN FYN SH3 DOMAIN IN COMPLEX WITH A REMARK 900 PEPTIDE FROM THE HEPATITIS C VIRUS NS5A-PROTEIN DBREF 4ZNX A 84 141 UNP P06241 FYN_HUMAN 84 141 DBREF 4ZNX B 84 141 UNP P06241 FYN_HUMAN 84 141 DBREF 4ZNX C 84 141 UNP P06241 FYN_HUMAN 84 141 DBREF 4ZNX D 84 141 UNP P06241 FYN_HUMAN 84 141 DBREF 4ZNX E 1 12 PDB 4ZNX 4ZNX 1 12 DBREF 4ZNX F 1 12 PDB 4ZNX 4ZNX 1 12 DBREF 4ZNX G 1 12 PDB 4ZNX 4ZNX 1 12 DBREF 4ZNX H 1 12 PDB 4ZNX 4ZNX 1 12 SEQRES 1 A 58 VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG SEQRES 2 A 58 THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE SEQRES 3 A 58 GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA SEQRES 4 A 58 ARG SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER SEQRES 5 A 58 ASN TYR VAL ALA PRO VAL SEQRES 1 B 58 VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG SEQRES 2 B 58 THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE SEQRES 3 B 58 GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA SEQRES 4 B 58 ARG SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER SEQRES 5 B 58 ASN TYR VAL ALA PRO VAL SEQRES 1 C 58 VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG SEQRES 2 C 58 THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE SEQRES 3 C 58 GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA SEQRES 4 C 58 ARG SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER SEQRES 5 C 58 ASN TYR VAL ALA PRO VAL SEQRES 1 D 58 VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG SEQRES 2 D 58 THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE SEQRES 3 D 58 GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA SEQRES 4 D 58 ARG SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER SEQRES 5 D 58 ASN TYR VAL ALA PRO VAL SEQRES 1 E 12 ALA PRO PRO LEU PRO PRO ARG ASN ARG PRO ARG LEU SEQRES 1 F 12 ALA PRO PRO LEU PRO PRO ARG ASN ARG PRO ARG LEU SEQRES 1 G 12 ALA PRO PRO LEU PRO PRO ARG ASN ARG PRO ARG LEU SEQRES 1 H 12 ALA PRO PRO LEU PRO PRO ARG ASN ARG PRO ARG LEU FORMUL 9 HOH *58(H2 O) SHEET 1 AA1 5 THR A 130 PRO A 134 0 SHEET 2 AA1 5 TRP A 119 SER A 124 -1 N ALA A 122 O GLY A 131 SHEET 3 AA1 5 LYS A 108 ASN A 113 -1 N GLN A 110 O ARG A 123 SHEET 4 AA1 5 LEU A 86 ALA A 89 -1 N PHE A 87 O PHE A 109 SHEET 5 AA1 5 VAL A 138 PRO A 140 -1 O ALA A 139 N VAL A 88 SHEET 1 AA2 5 THR B 130 PRO B 134 0 SHEET 2 AA2 5 TRP B 119 SER B 124 -1 N ALA B 122 O GLY B 131 SHEET 3 AA2 5 LYS B 108 ASN B 113 -1 N GLN B 110 O ARG B 123 SHEET 4 AA2 5 PHE B 87 ALA B 89 -1 N PHE B 87 O PHE B 109 SHEET 5 AA2 5 VAL B 138 PRO B 140 -1 O ALA B 139 N VAL B 88 SHEET 1 AA3 5 THR C 130 PRO C 134 0 SHEET 2 AA3 5 TRP C 119 SER C 124 -1 N ALA C 122 O GLY C 131 SHEET 3 AA3 5 LYS C 108 ASN C 113 -1 N GLN C 110 O ARG C 123 SHEET 4 AA3 5 PHE C 87 ALA C 89 -1 N PHE C 87 O PHE C 109 SHEET 5 AA3 5 VAL C 138 PRO C 140 -1 O ALA C 139 N VAL C 88 SHEET 1 AA4 5 THR D 130 PRO D 134 0 SHEET 2 AA4 5 TRP D 119 SER D 124 -1 N ALA D 122 O GLY D 131 SHEET 3 AA4 5 LYS D 108 ASN D 113 -1 N LEU D 112 O GLU D 121 SHEET 4 AA4 5 LEU D 86 ALA D 89 -1 N PHE D 87 O PHE D 109 SHEET 5 AA4 5 VAL D 138 PRO D 140 -1 O ALA D 139 N VAL D 88 CRYST1 31.658 76.664 73.175 90.00 94.74 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031588 0.000000 0.002622 0.00000 SCALE2 0.000000 0.013044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013713 0.00000