HEADER VIRAL PROTEIN 02-APR-15 4Z4S TITLE CRYSTAL STRUCTURE OF GII.10 P DOMAIN IN COMPLEX WITH 150MM FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTRUDING DOMAIN, UNP RESIDUES 224-538; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS GII.10; SOURCE 3 ORGANISM_TAXID: 747305; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMBP KEYWDS FUCOSE, NOROVIRUS, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.D.KOROMYSLOVA,M.M.LEUTHOLD,G.S.HANSMAN REVDAT 4 10-JAN-24 4Z4S 1 HETSYN REVDAT 3 29-JUL-20 4Z4S 1 COMPND REMARK HETNAM SITE REVDAT 2 03-JUN-15 4Z4S 1 JRNL REVDAT 1 27-MAY-15 4Z4S 0 JRNL AUTH A.D.KOROMYSLOVA,M.M.LEUTHOLD,M.W.BOWLER,G.S.HANSMAN JRNL TITL THE SWEET QUARTET: BINDING OF FUCOSE TO THE NOROVIRUS JRNL TITL 2 CAPSID. JRNL REF VIROLOGY V. 483 203 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25980740 JRNL DOI 10.1016/J.VIROL.2015.04.006 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 63881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0940 - 5.1134 0.97 2655 138 0.1439 0.1503 REMARK 3 2 5.1134 - 4.0596 0.98 2655 139 0.1158 0.1519 REMARK 3 3 4.0596 - 3.5467 0.99 2655 140 0.1332 0.1647 REMARK 3 4 3.5467 - 3.2226 0.99 2664 141 0.1434 0.1660 REMARK 3 5 3.2226 - 2.9917 0.99 2640 139 0.1450 0.1773 REMARK 3 6 2.9917 - 2.8153 0.99 2651 139 0.1528 0.1775 REMARK 3 7 2.8153 - 2.6743 0.99 2662 140 0.1484 0.1556 REMARK 3 8 2.6743 - 2.5579 1.00 2626 138 0.1429 0.2129 REMARK 3 9 2.5579 - 2.4595 1.00 2649 140 0.1439 0.1656 REMARK 3 10 2.4595 - 2.3746 1.00 2646 139 0.1438 0.1857 REMARK 3 11 2.3746 - 2.3004 1.00 2653 140 0.1394 0.1943 REMARK 3 12 2.3004 - 2.2346 1.00 2647 139 0.1426 0.1877 REMARK 3 13 2.2346 - 2.1758 1.00 2667 141 0.1451 0.1817 REMARK 3 14 2.1758 - 2.1227 1.00 2634 138 0.1436 0.2098 REMARK 3 15 2.1227 - 2.0745 1.00 2655 140 0.1438 0.1974 REMARK 3 16 2.0745 - 2.0303 0.99 2627 138 0.1577 0.2272 REMARK 3 17 2.0303 - 1.9897 0.99 2667 141 0.1525 0.1939 REMARK 3 18 1.9897 - 1.9521 0.99 2597 136 0.1616 0.2083 REMARK 3 19 1.9521 - 1.9173 0.99 2645 140 0.1596 0.2210 REMARK 3 20 1.9173 - 1.8848 0.99 2644 139 0.1599 0.2288 REMARK 3 21 1.8848 - 1.8544 0.99 2609 137 0.1696 0.2047 REMARK 3 22 1.8544 - 1.8259 0.99 2617 138 0.1767 0.2509 REMARK 3 23 1.8259 - 1.7990 0.95 2523 133 0.1996 0.2520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5065 REMARK 3 ANGLE : 1.447 6945 REMARK 3 CHIRALITY : 0.084 788 REMARK 3 PLANARITY : 0.009 916 REMARK 3 DIHEDRAL : 11.995 1782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9143 8.8880 10.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0750 REMARK 3 T33: 0.0852 T12: -0.0059 REMARK 3 T13: -0.0145 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.5218 L22: 1.2990 REMARK 3 L33: 1.7705 L12: -0.2634 REMARK 3 L13: -0.2762 L23: 0.4759 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 0.0324 S13: 0.0393 REMARK 3 S21: -0.0315 S22: -0.0043 S23: 0.0022 REMARK 3 S31: -0.0898 S32: 0.0550 S33: -0.0090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6350 9.0701 34.9347 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.1209 REMARK 3 T33: 0.1204 T12: -0.0016 REMARK 3 T13: -0.0410 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.8384 L22: 2.2744 REMARK 3 L33: 2.8639 L12: 0.0345 REMARK 3 L13: -0.0835 L23: 0.0153 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.4647 S13: 0.1113 REMARK 3 S21: 0.4603 S22: 0.0368 S23: -0.2461 REMARK 3 S31: -0.2668 S32: 0.2178 S33: -0.0502 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4106 7.7841 11.8718 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.0754 REMARK 3 T33: 0.0842 T12: -0.0007 REMARK 3 T13: -0.0056 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.5466 L22: 0.6879 REMARK 3 L33: 1.2468 L12: 0.0335 REMARK 3 L13: -0.1258 L23: -0.2128 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0691 S13: 0.0706 REMARK 3 S21: -0.0499 S22: 0.0349 S23: 0.0527 REMARK 3 S31: -0.1009 S32: -0.0452 S33: -0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4912 -4.5681 -7.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.1668 T22: 0.1552 REMARK 3 T33: 0.0802 T12: 0.0088 REMARK 3 T13: 0.0123 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.3599 L22: 3.0292 REMARK 3 L33: 2.3222 L12: 1.4416 REMARK 3 L13: -0.2825 L23: 0.2161 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: 0.1262 S13: -0.2907 REMARK 3 S21: -0.3230 S22: 0.0278 S23: -0.2427 REMARK 3 S31: 0.1972 S32: 0.2337 S33: 0.0366 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 522 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0544 -3.6597 -12.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.1928 REMARK 3 T33: 0.1112 T12: -0.0231 REMARK 3 T13: 0.0514 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.5274 L22: 0.5261 REMARK 3 L33: 4.7189 L12: 0.3173 REMARK 3 L13: -0.2994 L23: -1.5238 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.2560 S13: -0.1833 REMARK 3 S21: -0.3015 S22: 0.0268 S23: -0.1358 REMARK 3 S31: 0.2428 S32: 0.3301 S33: 0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3296 -6.2747 21.7224 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0797 REMARK 3 T33: 0.0741 T12: 0.0110 REMARK 3 T13: -0.0093 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.7185 L22: 0.9106 REMARK 3 L33: 0.6668 L12: 0.5504 REMARK 3 L13: -0.0936 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.0721 S13: -0.0060 REMARK 3 S21: 0.0352 S22: -0.0050 S23: -0.0568 REMARK 3 S31: 0.0461 S32: 0.1026 S33: -0.0108 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 296 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5840 -13.6989 27.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0659 REMARK 3 T33: 0.1061 T12: -0.0197 REMARK 3 T13: -0.0064 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.7794 L22: 1.0271 REMARK 3 L33: 0.8614 L12: -0.3176 REMARK 3 L13: 0.2224 L23: -0.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: -0.0889 S13: -0.2380 REMARK 3 S21: 0.0540 S22: 0.0185 S23: 0.0847 REMARK 3 S31: 0.1403 S32: -0.0604 S33: -0.0278 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 427 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0674 -1.1063 31.3525 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0919 REMARK 3 T33: 0.1072 T12: -0.0120 REMARK 3 T13: -0.0323 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.2698 L22: 0.7369 REMARK 3 L33: 1.2079 L12: 0.4876 REMARK 3 L13: 0.2545 L23: -0.1680 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0632 S13: -0.0015 REMARK 3 S21: 0.1353 S22: -0.0024 S23: -0.2431 REMARK 3 S31: -0.0102 S32: 0.1672 S33: -0.0132 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6479 0.6849 19.6584 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.1212 REMARK 3 T33: 0.1344 T12: -0.0040 REMARK 3 T13: 0.0020 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.6396 L22: 1.1781 REMARK 3 L33: 1.9192 L12: -0.0342 REMARK 3 L13: -0.0666 L23: 0.4396 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.1432 S13: 0.1243 REMARK 3 S21: -0.0480 S22: 0.0185 S23: -0.1724 REMARK 3 S31: -0.0986 S32: 0.1693 S33: -0.0194 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2822 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984463 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 43.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06395 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29730 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3ONU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, BIS-TRIS PROPANE, REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.34050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 VAL B 346 REMARK 465 PRO B 347 REMARK 465 GLY B 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 VAL A 346 CG1 CG2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 ARG A 492 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 531 CG CD OE1 NE2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 HIS B 298 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 344 CG OD1 ND2 REMARK 470 THR B 345 OG1 CG2 REMARK 470 GLU B 349 CG CD OE1 OE2 REMARK 470 ASN B 351 CG OD1 ND2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ARG B 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 524 CZ NH1 NH2 REMARK 470 GLN B 531 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 736 O HOH B 885 2.03 REMARK 500 O HOH B 737 O HOH B 1006 2.08 REMARK 500 O HOH B 712 O HOH B 908 2.10 REMARK 500 O HOH B 956 O HOH B 1037 2.14 REMARK 500 O HOH A 829 O HOH A 1086 2.16 REMARK 500 O HOH A 1070 O HOH A 1075 2.16 REMARK 500 O HOH A 945 O HOH B 701 2.17 REMARK 500 O HOH A 717 O HOH A 1029 2.17 REMARK 500 O HOH B 941 O HOH B 980 2.17 REMARK 500 O HOH A 994 O HOH B 959 2.18 REMARK 500 O HOH A 1046 O HOH A 1078 2.19 REMARK 500 O HOH A 950 O HOH A 1038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 287 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 231 46.85 -98.37 REMARK 500 ASN A 252 78.95 -152.65 REMARK 500 GLN A 260 50.50 -151.42 REMARK 500 ALA A 323 166.61 179.63 REMARK 500 GLN A 384 -35.11 -139.35 REMARK 500 VAL A 529 -152.53 -121.80 REMARK 500 ILE B 231 53.37 -97.88 REMARK 500 ASN B 252 80.05 -152.49 REMARK 500 GLN B 260 49.78 -152.35 REMARK 500 ALA B 323 167.17 179.15 REMARK 500 GLN B 384 -34.31 -140.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1091 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1092 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1093 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B1044 DISTANCE = 6.63 ANGSTROMS DBREF 4Z4S A 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 DBREF 4Z4S B 224 538 UNP Q5F4T5 Q5F4T5_9CALI 224 538 SEQRES 1 A 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 A 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 A 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 A 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 A 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 A 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 A 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 A 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 A 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 A 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 A 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 A 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 A 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 A 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 A 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 A 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 A 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 A 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 A 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 A 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 A 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 A 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 A 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 A 315 ALA PRO MET SEQRES 1 B 315 SER LYS PRO PHE THR LEU PRO ILE LEU THR LEU GLY GLU SEQRES 2 B 315 LEU THR ASN SER ARG PHE PRO LEU PRO ILE ASP VAL LEU SEQRES 3 B 315 TYR THR ASN PRO ASN GLU SER ALA ILE VAL GLN CYS GLN SEQRES 4 B 315 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 315 THR GLN LEU LEU PRO THR GLY ILE CYS ALA PHE ARG GLY SEQRES 6 B 315 LYS VAL THR GLN GLN VAL GLN ASP GLU HIS ARG GLY THR SEQRES 7 B 315 HIS TRP ASN MET THR VAL THR ASN LEU ASN GLY THR PRO SEQRES 8 B 315 PHE ASP PRO THR GLU ASP VAL PRO ALA PRO LEU GLY THR SEQRES 9 B 315 PRO ASP PHE SER GLY GLN ILE TYR GLY VAL ILE SER GLN SEQRES 10 B 315 ARG ASN THR ASN THR VAL PRO GLY GLU GLY ASN LEU PRO SEQRES 11 B 315 ALA ASN ARG ALA HIS GLU ALA VAL ILE ALA THR TYR SER SEQRES 12 B 315 PRO LYS PHE THR PRO LYS LEU GLY ASN ILE GLN PHE SER SEQRES 13 B 315 THR TRP GLU THR GLN ASP VAL SER SER GLY GLN PRO THR SEQRES 14 B 315 LYS PHE THR PRO VAL GLY LEU ALA SER VAL ASP ALA ASN SEQRES 15 B 315 SER HIS PHE ASP GLN TRP THR LEU PRO SER TYR SER GLY SEQRES 16 B 315 ALA LEU THR LEU ASN MET ASN LEU ALA PRO SER VAL ALA SEQRES 17 B 315 PRO VAL PHE PRO GLY GLU CYS LEU LEU PHE PHE ARG SER SEQRES 18 B 315 PHE ILE PRO LEU LYS GLY GLY TYR GLY ASN PRO ALA ILE SEQRES 19 B 315 ASP CYS LEU MET PRO GLN GLU TRP VAL GLN HIS LEU TYR SEQRES 20 B 315 GLN GLU SER ALA PRO SER LEU SER ASP VAL ALA LEU VAL SEQRES 21 B 315 ARG TYR VAL ASN PRO GLU THR GLY ARG THR LEU PHE GLU SEQRES 22 B 315 ALA LYS LEU HIS ARG ASN GLY PHE LEU THR VAL ALA ARG SEQRES 23 B 315 ASN SER ALA GLY PRO VAL VAL ALA PRO THR ASN GLY TYR SEQRES 24 B 315 PHE ARG PHE ASP SER TRP VAL ASN GLN PHE TYR THR LEU SEQRES 25 B 315 ALA PRO MET HET EDO A 601 8 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET FUL A 605 11 HET FUL A 606 11 HET NO3 A 607 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET FUL B 604 11 HET FUL B 605 11 HETNAM EDO 1,2-ETHANEDIOL HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM NO3 NITRATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 3 EDO 7(C2 H6 O2) FORMUL 7 FUL 4(C6 H12 O5) FORMUL 9 NO3 N O3 1- FORMUL 15 HOH *737(H2 O) HELIX 1 AA1 THR A 233 LEU A 237 5 5 HELIX 2 AA2 LEU A 279 ILE A 283 5 5 HELIX 3 AA3 VAL A 346 GLY A 350 5 5 HELIX 4 AA4 THR A 370 LEU A 373 5 4 HELIX 5 AA5 ASP A 403 HIS A 407 5 5 HELIX 6 AA6 PRO A 462 SER A 473 1 12 HELIX 7 AA7 THR B 233 LEU B 237 5 5 HELIX 8 AA8 LEU B 279 ILE B 283 5 5 HELIX 9 AA9 THR B 370 LEU B 373 5 4 HELIX 10 AB1 ASP B 403 HIS B 407 5 5 HELIX 11 AB2 PRO B 462 SER B 473 1 12 SHEET 1 AA1 4 ALA A 456 CYS A 459 0 SHEET 2 AA1 4 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA1 4 VAL A 248 THR A 251 -1 N TYR A 250 O PHE A 441 SHEET 4 AA1 4 GLY A 513 VAL A 515 -1 O GLY A 513 N THR A 251 SHEET 1 AA2 6 ALA A 456 CYS A 459 0 SHEET 2 AA2 6 GLU A 437 PHE A 445 -1 N SER A 444 O ILE A 457 SHEET 3 AA2 6 PHE A 504 ALA A 508 -1 O VAL A 507 N CYS A 438 SHEET 4 AA2 6 THR A 493 HIS A 500 -1 N HIS A 500 O PHE A 504 SHEET 5 AA2 6 VAL A 480 VAL A 486 -1 N TYR A 485 O LEU A 494 SHEET 6 AA2 6 TYR A 522 VAL A 529 -1 O SER A 527 N LEU A 482 SHEET 1 AA3 8 GLY B 450 TYR B 452 0 SHEET 2 AA3 8 ALA A 354 ALA A 363 -1 N ASN A 355 O GLY B 451 SHEET 3 AA3 8 ASN A 375 THR A 380 -1 O SER A 379 N VAL A 361 SHEET 4 AA3 8 THR A 301 VAL A 307 -1 N MET A 305 O ILE A 376 SHEET 5 AA3 8 PHE A 286 VAL A 294 -1 N THR A 291 O ASN A 304 SHEET 6 AA3 8 PRO A 391 LEU A 399 -1 O THR A 392 N GLY A 288 SHEET 7 AA3 8 GLN A 333 ARG A 341 -1 N TYR A 335 O VAL A 397 SHEET 8 AA3 8 ALA A 354 ALA A 363 -1 O ILE A 362 N ILE A 334 SHEET 1 AA4 8 GLY A 450 TYR A 452 0 SHEET 2 AA4 8 ALA B 354 ALA B 363 -1 O ASN B 355 N GLY A 451 SHEET 3 AA4 8 ASN B 375 THR B 380 -1 O SER B 379 N VAL B 361 SHEET 4 AA4 8 THR B 301 VAL B 307 -1 N MET B 305 O ILE B 376 SHEET 5 AA4 8 PHE B 286 GLN B 295 -1 N VAL B 294 O HIS B 302 SHEET 6 AA4 8 PRO B 391 LEU B 399 -1 O THR B 392 N GLY B 288 SHEET 7 AA4 8 GLN B 333 ARG B 341 -1 N VAL B 337 O THR B 395 SHEET 8 AA4 8 ALA B 354 ALA B 363 -1 O ILE B 362 N ILE B 334 SHEET 1 AA5 4 ALA B 456 CYS B 459 0 SHEET 2 AA5 4 CYS B 438 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA5 4 VAL B 248 THR B 251 -1 N TYR B 250 O PHE B 441 SHEET 4 AA5 4 GLY B 513 PRO B 514 -1 O GLY B 513 N THR B 251 SHEET 1 AA6 6 ALA B 456 CYS B 459 0 SHEET 2 AA6 6 CYS B 438 PHE B 445 -1 N SER B 444 O ILE B 457 SHEET 3 AA6 6 PHE B 504 VAL B 507 -1 O VAL B 507 N CYS B 438 SHEET 4 AA6 6 THR B 493 HIS B 500 -1 N HIS B 500 O PHE B 504 SHEET 5 AA6 6 VAL B 480 VAL B 486 -1 N ALA B 481 O LEU B 499 SHEET 6 AA6 6 TYR B 522 VAL B 529 -1 O SER B 527 N LEU B 482 CRYST1 66.090 78.681 68.811 90.00 99.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015131 0.000000 0.002561 0.00000 SCALE2 0.000000 0.012710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014739 0.00000