HEADER TRANSFERASE 22-OCT-14 4WQK TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE NUCLEOTIDYLYLTRANSFERASE ANT(2")- TITLE 2 IA, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2''-AMINOGLYCOSIDE NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAD(2''),GENTAMICIN 2''-NUCLEOTIDYLTRANSFERASE,GENTAMICIN COMPND 5 RESISTANCE PROTEIN; COMPND 6 EC: 2.7.7.46; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: AADB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDES, KANAMYCIN, KEYWDS 2 NUCLEOTIDYLYLTRANSFERASE, ADENYLYLTRANSFERASE, KEYWDS 3 NUCLEOTIDYLTRANSFERASE FOLD, ALPHA/BETA PROTEIN, STRUCTURAL KEYWDS 4 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 5 CSGID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, NIAID, KEYWDS 6 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.COX,P.J.STOGIOS,A.SAVCHENKO,G.D.WRIGHT,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 27-DEC-23 4WQK 1 REMARK LINK REVDAT 5 08-JAN-20 4WQK 1 REMARK REVDAT 4 22-FEB-17 4WQK 1 AUTHOR REVDAT 3 28-JAN-15 4WQK 1 JRNL REVDAT 2 24-DEC-14 4WQK 1 REMARK REVDAT 1 12-NOV-14 4WQK 0 JRNL AUTH G.COX,P.J.STOGIOS,A.SAVCHENKO,G.D.WRIGHT JRNL TITL STRUCTURAL AND MOLECULAR BASIS FOR RESISTANCE TO JRNL TITL 2 AMINOGLYCOSIDE ANTIBIOTICS BY THE ADENYLYLTRANSFERASE JRNL TITL 3 ANT(2)-IA. JRNL REF MBIO V. 6 2015 JRNL REFN ESSN 2150-7511 JRNL PMID 25564464 JRNL DOI 10.1128/MBIO.02180-14 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 28068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0777 - 3.5699 1.00 1998 155 0.1585 0.1687 REMARK 3 2 3.5699 - 2.8338 1.00 1945 149 0.1430 0.1812 REMARK 3 3 2.8338 - 2.4757 1.00 1943 152 0.1547 0.1936 REMARK 3 4 2.4757 - 2.2494 1.00 1925 151 0.1635 0.2058 REMARK 3 5 2.2494 - 2.0882 0.99 1920 150 0.1567 0.2062 REMARK 3 6 2.0882 - 1.9651 0.99 1911 144 0.1555 0.2112 REMARK 3 7 1.9651 - 1.8666 0.98 1886 140 0.1618 0.2336 REMARK 3 8 1.8666 - 1.7854 0.98 1870 145 0.1641 0.2126 REMARK 3 9 1.7854 - 1.7167 0.97 1847 149 0.1658 0.2232 REMARK 3 10 1.7167 - 1.6574 0.97 1892 138 0.1622 0.1825 REMARK 3 11 1.6574 - 1.6056 0.96 1823 136 0.1608 0.2042 REMARK 3 12 1.6056 - 1.5597 0.95 1807 143 0.1718 0.2308 REMARK 3 13 1.5597 - 1.5186 0.93 1789 125 0.1993 0.2417 REMARK 3 14 1.5186 - 1.4816 0.78 1517 118 0.2834 0.3206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1493 REMARK 3 ANGLE : 1.441 2033 REMARK 3 CHIRALITY : 0.067 213 REMARK 3 PLANARITY : 0.008 263 REMARK 3 DIHEDRAL : 12.910 547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:61) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1744 24.1537 6.5230 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.1018 REMARK 3 T33: 0.1019 T12: -0.0056 REMARK 3 T13: -0.0078 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.2761 L22: 4.0353 REMARK 3 L33: 3.0952 L12: -0.5599 REMARK 3 L13: -0.8662 L23: 0.3352 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: -0.0294 S13: 0.1684 REMARK 3 S21: 0.1049 S22: 0.0134 S23: -0.1429 REMARK 3 S31: -0.1545 S32: 0.1135 S33: -0.0736 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 62:82) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7514 19.0084 9.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.2250 REMARK 3 T33: 0.2405 T12: 0.0033 REMARK 3 T13: -0.0472 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 5.1844 L22: 8.7151 REMARK 3 L33: 8.3906 L12: -0.2805 REMARK 3 L13: -0.1017 L23: -4.8071 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: -0.2733 S13: -0.2401 REMARK 3 S21: 0.2140 S22: -0.1808 S23: -0.6316 REMARK 3 S31: 0.1797 S32: 0.6388 S33: 0.0850 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 83:136) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9137 18.2524 12.9627 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.1478 REMARK 3 T33: 0.1445 T12: -0.0067 REMARK 3 T13: 0.0039 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.3628 L22: 1.7017 REMARK 3 L33: 1.4546 L12: 0.0085 REMARK 3 L13: -0.1412 L23: 0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.0094 S13: 0.0158 REMARK 3 S21: 0.1247 S22: -0.0318 S23: -0.0148 REMARK 3 S31: 0.0755 S32: -0.0467 S33: 0.0150 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 137:152) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3451 27.0032 29.1957 REMARK 3 T TENSOR REMARK 3 T11: 0.2954 T22: 0.2483 REMARK 3 T33: 0.2978 T12: 0.0059 REMARK 3 T13: -0.0702 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 8.1458 L22: 5.9302 REMARK 3 L33: 3.3446 L12: 2.9773 REMARK 3 L13: 2.4865 L23: -2.6157 REMARK 3 S TENSOR REMARK 3 S11: 0.1708 S12: -0.1223 S13: -0.1549 REMARK 3 S21: 0.4857 S22: -0.2683 S23: -0.6552 REMARK 3 S31: 0.0695 S32: 0.3922 S33: 0.1422 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 153:177) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5876 19.0991 27.3352 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.1827 REMARK 3 T33: 0.1268 T12: -0.0321 REMARK 3 T13: -0.0115 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 4.6681 L22: 3.2324 REMARK 3 L33: 2.8419 L12: -2.0059 REMARK 3 L13: -0.6045 L23: -2.1279 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.2185 S13: -0.2293 REMARK 3 S21: 0.6644 S22: 0.1439 S23: 0.3348 REMARK 3 S31: -0.2258 S32: -0.0668 S33: -0.0472 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03600 REMARK 200 FOR THE DATA SET : 63.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX PHENIX.AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MG/ML PROTEIN, 10% 2-PROPANOL, 20% REMARK 280 PEG4K, 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.05500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 483 O HOH A 498 2.11 REMARK 500 O HOH A 483 O HOH A 502 2.12 REMARK 500 OE2 GLU A 62 O HOH A 548 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 94 -48.74 67.25 REMARK 500 GLU A 101 -0.01 73.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 466 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 46 OD2 101.4 REMARK 620 3 HOH A 483 O 160.1 78.7 REMARK 620 4 HOH A 501 O 83.4 79.1 77.1 REMARK 620 5 HOH A 502 O 141.7 88.8 57.9 134.9 REMARK 620 6 HOH A 515 O 89.6 167.3 88.8 96.2 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 ASP A 46 OD1 115.5 REMARK 620 3 ASP A 86 OD2 106.2 75.4 REMARK 620 4 HOH A 502 O 121.7 77.8 131.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 412 O REMARK 620 2 HOH A 421 O 95.0 REMARK 620 3 HOH A 430 O 92.7 81.8 REMARK 620 4 HOH A 468 O 167.2 97.1 93.2 REMARK 620 5 HOH A 530 O 85.8 178.9 97.4 82.2 REMARK 620 6 HOH A 540 O 87.7 88.7 170.6 88.3 92.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP92558 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4WQL RELATED DB: PDB REMARK 900 KANAMYCIN B-BOUND FORM REMARK 900 RELATED ID: IDP92558 RELATED DB: TARGETTRACK DBREF 4WQK A 1 177 UNP P0AE05 AADB1_KLEPN 1 177 SEQADV 4WQK GLY A 0 UNP P0AE05 EXPRESSION TAG SEQRES 1 A 178 GLY MET ASP THR THR GLN VAL THR LEU ILE HIS LYS ILE SEQRES 2 A 178 LEU ALA ALA ALA ASP GLU ARG ASN LEU PRO LEU TRP ILE SEQRES 3 A 178 GLY GLY GLY TRP ALA ILE ASP ALA ARG LEU GLY ARG VAL SEQRES 4 A 178 THR ARG LYS HIS ASP ASP ILE ASP LEU THR PHE PRO GLY SEQRES 5 A 178 GLU ARG ARG GLY GLU LEU GLU ALA ILE VAL GLU MET LEU SEQRES 6 A 178 GLY GLY ARG VAL MET GLU GLU LEU ASP TYR GLY PHE LEU SEQRES 7 A 178 ALA GLU ILE GLY ASP GLU LEU LEU ASP CYS GLU PRO ALA SEQRES 8 A 178 TRP TRP ALA ASP GLU ALA TYR GLU ILE ALA GLU ALA PRO SEQRES 9 A 178 GLN GLY SER CYS PRO GLU ALA ALA GLU GLY VAL ILE ALA SEQRES 10 A 178 GLY ARG PRO VAL ARG CYS ASN SER TRP GLU ALA ILE ILE SEQRES 11 A 178 TRP ASP TYR PHE TYR TYR ALA ASP GLU VAL PRO PRO VAL SEQRES 12 A 178 ASP TRP PRO THR LYS HIS ILE GLU SER TYR ARG LEU ALA SEQRES 13 A 178 CYS THR SER LEU GLY ALA GLU LYS VAL GLU VAL LEU ARG SEQRES 14 A 178 ALA ALA PHE ARG SER ARG TYR ALA ALA HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET CL A 204 1 HET IPA A 205 4 HET IPA A 206 4 HET IPA A 207 4 HET IPA A 208 4 HET IPA A 209 4 HET GOL A 210 6 HET GOL A 211 6 HET GOL A 212 6 HET GOL A 213 6 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 3(MG 2+) FORMUL 5 CL CL 1- FORMUL 6 IPA 5(C3 H8 O) FORMUL 11 GOL 4(C3 H8 O3) FORMUL 15 HOH *262(H2 O) HELIX 1 AA1 THR A 3 ARG A 19 1 17 HELIX 2 AA2 GLY A 26 GLY A 36 1 11 HELIX 3 AA3 ARG A 53 LEU A 64 1 12 HELIX 4 AA4 SER A 124 VAL A 139 1 16 HELIX 5 AA5 PRO A 140 TRP A 144 5 5 HELIX 6 AA6 PRO A 145 GLY A 160 1 16 HELIX 7 AA7 GLY A 160 ALA A 176 1 17 SHEET 1 AA1 5 TRP A 24 ILE A 25 0 SHEET 2 AA1 5 ILE A 45 PRO A 50 -1 O THR A 48 N TRP A 24 SHEET 3 AA1 5 GLU A 83 TRP A 92 1 O ASP A 86 N ILE A 45 SHEET 4 AA1 5 GLY A 75 ILE A 80 -1 N ALA A 78 O LEU A 85 SHEET 5 AA1 5 ARG A 67 LEU A 72 -1 N MET A 69 O LEU A 77 SHEET 1 AA2 4 TRP A 24 ILE A 25 0 SHEET 2 AA2 4 ILE A 45 PRO A 50 -1 O THR A 48 N TRP A 24 SHEET 3 AA2 4 GLU A 83 TRP A 92 1 O ASP A 86 N ILE A 45 SHEET 4 AA2 4 TYR A 97 GLU A 98 -1 O GLU A 98 N TRP A 91 SHEET 1 AA3 2 GLY A 113 ILE A 115 0 SHEET 2 AA3 2 ARG A 118 VAL A 120 -1 O VAL A 120 N GLY A 113 LINK OD1 ASP A 44 MG MG A 201 1555 1555 1.98 LINK OD2 ASP A 44 MG MG A 202 1555 1555 2.72 LINK OD2 ASP A 46 MG MG A 201 1555 1555 2.03 LINK OD1 ASP A 46 MG MG A 202 1555 1555 2.45 LINK OD2 ASP A 86 MG MG A 202 1555 1555 2.44 LINK MG MG A 201 O HOH A 483 1555 1555 2.43 LINK MG MG A 201 O HOH A 501 1555 1555 2.31 LINK MG MG A 201 O HOH A 502 1555 1555 1.82 LINK MG MG A 201 O HOH A 515 1555 1555 1.99 LINK MG MG A 202 O HOH A 502 1555 1555 2.14 LINK MG MG A 203 O HOH A 412 1555 1555 1.97 LINK MG MG A 203 O HOH A 421 1555 1555 2.27 LINK MG MG A 203 O HOH A 430 1555 1555 2.05 LINK MG MG A 203 O HOH A 468 1555 1555 2.03 LINK MG MG A 203 O HOH A 530 1555 1555 2.09 LINK MG MG A 203 O HOH A 540 1555 1555 2.00 SITE 1 AC1 7 ASP A 44 ASP A 46 MG A 202 HOH A 483 SITE 2 AC1 7 HOH A 501 HOH A 502 HOH A 515 SITE 1 AC2 6 ASP A 44 ASP A 46 ASP A 86 MG A 201 SITE 2 AC2 6 HOH A 502 HOH A 558 SITE 1 AC3 6 HOH A 412 HOH A 421 HOH A 430 HOH A 468 SITE 2 AC3 6 HOH A 530 HOH A 540 SITE 1 AC4 2 PHE A 49 ARG A 54 SITE 1 AC5 3 GLU A 109 HOH A 318 HOH A 435 SITE 1 AC6 1 PRO A 119 SITE 1 AC7 2 GLU A 95 HOH A 416 SITE 1 AC8 1 TYR A 152 SITE 1 AC9 9 GLY A 27 GLU A 88 ILE A 99 ASN A 123 SITE 2 AC9 9 ILE A 128 ASP A 131 HOH A 419 HOH A 425 SITE 3 AC9 9 HOH A 448 SITE 1 AD1 7 ASP A 46 ASP A 86 GLU A 88 ASP A 131 SITE 2 AD1 7 HOH A 474 HOH A 525 HOH A 561 SITE 1 AD2 3 ARG A 40 LYS A 41 HOH A 560 SITE 1 AD3 7 ALA A 93 ASP A 94 GLU A 95 GLN A 104 SITE 2 AD3 7 HOH A 307 HOH A 346 HOH A 556 CRYST1 45.528 42.110 47.702 90.00 105.49 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021965 0.000000 0.006088 0.00000 SCALE2 0.000000 0.023747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021754 0.00000