HEADER TRANSFERASE 27-JUN-14 4TVM TITLE STRUCTURE OF CITRATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: RVBD_0896; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KREBS CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.M.FERRARIS,M.RIZZI REVDAT 4 20-DEC-23 4TVM 1 REMARK REVDAT 3 16-OCT-19 4TVM 1 REMARK REVDAT 2 28-JAN-15 4TVM 1 JRNL REVDAT 1 14-JAN-15 4TVM 0 JRNL AUTH D.M.FERRARIS,R.SPALLEK,W.OEHLMANN,M.SINGH,M.RIZZI JRNL TITL STRUCTURES OF CITRATE SYNTHASE AND MALATE DEHYDROGENASE OF JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF PROTEINS V. 83 389 2015 JRNL REFN ESSN 1097-0134 JRNL PMID 25524525 JRNL DOI 10.1002/PROT.24743 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1502 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2966 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.13000 REMARK 3 B22 (A**2) : 14.13000 REMARK 3 B33 (A**2) : -28.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.225 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3041 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2856 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4128 ; 1.757 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6555 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 8.661 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;38.094 ;23.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;17.177 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3462 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 3.764 ; 5.387 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1515 ; 3.754 ; 5.386 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1888 ; 5.518 ; 8.071 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1889 ; 5.516 ; 8.072 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 3.593 ; 5.563 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1523 ; 3.594 ; 5.563 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2240 ; 5.435 ; 8.231 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12584 ; 9.500 ;50.076 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12571 ; 9.502 ;50.075 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 4 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.545 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -2/3H-1/3K+2/3L, -1/3H-2/3K-2/3L, 2/3H REMARK 3 -2/3K+1/ REMARK 3 TWIN FRACTION : 0.179 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : -1/3H+1/3K-2/3L, -K, -4/3H-2/3K+1/3L REMARK 3 TWIN FRACTION : 0.115 REMARK 3 TWIN DOMAIN : 4 REMARK 3 TWIN OPERATOR : 1/3H-1/3K+2/3L, -H, -2/3H-4/3K-1/3L REMARK 3 TWIN FRACTION : 0.161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9725 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24114 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4E6Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE SYNTHASE CRYSTALS GREW AT 20 REMARK 280 DEGREES CELSIUS IN 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.1M REMARK 280 TRIS PH=8.5, 3.4M 1,6-HEXANDIOL IN A 75/25 PROTEIN/RESERVOIR- REMARK 280 RATIO DROP OF 1 MICROLITRE AND WITH A PROTEIN CONCENTRATION OF REMARK 280 5.2 MG/ML., PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 74.38350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.94533 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.93233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 74.38350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.94533 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.93233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 74.38350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.94533 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.93233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 74.38350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.94533 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.93233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 74.38350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.94533 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.93233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 74.38350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.94533 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.93233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.89067 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 121.86467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 85.89067 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 121.86467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 85.89067 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 121.86467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 85.89067 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 121.86467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 85.89067 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 121.86467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 85.89067 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 121.86467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 182.79700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 PHE A 291 REMARK 465 VAL A 292 REMARK 465 ARG A 293 REMARK 465 LYS A 294 REMARK 465 VAL A 295 REMARK 465 LYS A 296 REMARK 465 ASN A 297 REMARK 465 ARG A 298 REMARK 465 GLU A 299 REMARK 465 ALA A 300 REMARK 465 GLY A 301 REMARK 465 VAL A 302 REMARK 465 LYS A 303 REMARK 465 LEU A 304 REMARK 465 MET A 305 REMARK 465 GLY A 306 REMARK 465 PHE A 307 REMARK 465 GLY A 308 REMARK 465 HIS A 309 REMARK 465 ARG A 310 REMARK 465 VAL A 311 REMARK 465 TYR A 312 REMARK 465 LYS A 313 REMARK 465 ALA A 331 REMARK 465 LYS A 332 REMARK 465 LEU A 333 REMARK 465 GLY A 334 REMARK 465 ALA A 350 REMARK 465 LEU A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 ASP A 354 REMARK 465 TYR A 355 REMARK 465 PHE A 356 REMARK 465 ILE A 357 REMARK 465 GLU A 358 REMARK 465 ARG A 359 REMARK 465 LYS A 360 REMARK 465 LEU A 361 REMARK 465 TYR A 362 REMARK 465 PRO A 363 REMARK 465 ASN A 364 REMARK 465 ASP A 429 REMARK 465 ALA A 430 REMARK 465 ARG A 431 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 233 OE2 REMARK 470 LEU A 330 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 103 OG1 THR A 107 2.10 REMARK 500 O SER A 338 N GLY A 341 2.11 REMARK 500 OG1 THR A 60 OD2 ASP A 231 2.11 REMARK 500 O THR A 427 O HOH A 601 2.18 REMARK 500 OG SER A 83 OE1 GLU A 87 2.18 REMARK 500 O LEU A 10 N ILE A 17 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 234 NH1 ARG A 412 4556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 -166.19 -103.87 REMARK 500 VAL A 183 -169.49 -127.37 REMARK 500 HIS A 232 40.28 -157.92 REMARK 500 HIS A 267 -81.19 -122.04 REMARK 500 VAL A 288 -156.31 -134.42 REMARK 500 ASP A 407 125.75 -176.25 REMARK 500 THR A 421 35.53 -156.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 37 ALA A 38 -40.86 REMARK 500 ALA A 38 LYS A 39 32.55 REMARK 500 GLY A 184 GLN A 185 -149.90 REMARK 500 VAL A 365 ASP A 366 144.73 REMARK 500 GLY A 406 ASP A 407 141.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 622 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAA A 501 DBREF 4TVM A 1 431 UNP I6XWI3 I6XWI3_MYCTU 1 431 SEQADV 4TVM VAL A 1 UNP I6XWI3 MET 1 CONFLICT SEQRES 1 A 431 VAL ALA ASP THR ASP ASP THR ALA THR LEU ARG TYR PRO SEQRES 2 A 431 GLY GLY GLU ILE ASP LEU GLN ILE VAL HIS ALA THR GLU SEQRES 3 A 431 GLY ALA ASP GLY ILE ALA LEU GLY PRO LEU LEU ALA LYS SEQRES 4 A 431 THR GLY HIS THR THR PHE ASP VAL GLY PHE ALA ASN THR SEQRES 5 A 431 ALA ALA ALA LYS SER SER ILE THR TYR ILE ASP GLY ASP SEQRES 6 A 431 ALA GLY ILE LEU ARG TYR ARG GLY TYR PRO ILE ASP GLN SEQRES 7 A 431 LEU ALA GLU LYS SER THR PHE ILE GLU VAL CYS TYR LEU SEQRES 8 A 431 LEU ILE TYR GLY GLU LEU PRO ASP THR ASP GLN LEU ALA SEQRES 9 A 431 GLN PHE THR GLY ARG ILE GLN ARG HIS THR MET LEU HIS SEQRES 10 A 431 GLU ASP LEU LYS ARG PHE PHE ASP GLY PHE PRO ARG ASN SEQRES 11 A 431 ALA HIS PRO MET PRO VAL LEU SER SER VAL VAL ASN ALA SEQRES 12 A 431 LEU SER ALA TYR TYR GLN ASP ALA LEU ASP PRO MET ASP SEQRES 13 A 431 ASN GLY GLN VAL GLU LEU SER THR ILE ARG LEU LEU ALA SEQRES 14 A 431 LYS LEU PRO THR ILE ALA ALA TYR ALA TYR LYS LYS SER SEQRES 15 A 431 VAL GLY GLN PRO PHE LEU TYR PRO ASP ASN SER LEU THR SEQRES 16 A 431 LEU VAL GLU ASN PHE LEU ARG LEU THR PHE GLY PHE PRO SEQRES 17 A 431 ALA GLU PRO TYR GLN ALA ASP PRO GLU VAL VAL ARG ALA SEQRES 18 A 431 LEU ASP MET LEU PHE ILE LEU HIS ALA ASP HIS GLU GLN SEQRES 19 A 431 ASN CYS SER THR SER THR VAL ARG LEU VAL GLY SER SER SEQRES 20 A 431 ARG ALA ASN LEU PHE THR SER ILE SER GLY GLY ILE ASN SEQRES 21 A 431 ALA LEU TRP GLY PRO LEU HIS GLY GLY ALA ASN GLN ALA SEQRES 22 A 431 VAL LEU GLU MET LEU GLU GLY ILE ARG ASP SER GLY ASP SEQRES 23 A 431 ASP VAL SER GLU PHE VAL ARG LYS VAL LYS ASN ARG GLU SEQRES 24 A 431 ALA GLY VAL LYS LEU MET GLY PHE GLY HIS ARG VAL TYR SEQRES 25 A 431 LYS ASN TYR ASP PRO ARG ALA ARG ILE VAL LYS GLU GLN SEQRES 26 A 431 ALA ASP LYS ILE LEU ALA LYS LEU GLY GLY ASP ASP SER SEQRES 27 A 431 LEU LEU GLY ILE ALA LYS GLU LEU GLU GLU ALA ALA LEU SEQRES 28 A 431 THR ASP ASP TYR PHE ILE GLU ARG LYS LEU TYR PRO ASN SEQRES 29 A 431 VAL ASP PHE TYR THR GLY LEU ILE TYR ARG ALA LEU GLY SEQRES 30 A 431 PHE PRO THR ARG MET PHE THR VAL LEU PHE ALA LEU GLY SEQRES 31 A 431 ARG LEU PRO GLY TRP ILE ALA HIS TRP ARG GLU MET HIS SEQRES 32 A 431 ASP GLU GLY ASP SER LYS ILE GLY ARG PRO ARG GLN ILE SEQRES 33 A 431 TYR THR GLY TYR THR GLU ARG ASP TYR VAL THR ILE ASP SEQRES 34 A 431 ALA ARG HET OAA A 501 9 HETNAM OAA OXALOACETATE ION FORMUL 2 OAA C4 H3 O5 1- FORMUL 3 HOH *36(H2 O) HELIX 1 AA1 ASP A 46 ALA A 50 5 5 HELIX 2 AA2 ILE A 76 SER A 83 1 8 HELIX 3 AA3 THR A 84 GLY A 95 1 12 HELIX 4 AA4 ASP A 99 ARG A 112 1 14 HELIX 5 AA5 HIS A 117 PHE A 123 1 7 HELIX 6 AA6 PHE A 124 PHE A 127 5 4 HELIX 7 AA7 HIS A 132 TYR A 148 1 17 HELIX 8 AA8 GLN A 149 LEU A 152 5 4 HELIX 9 AA9 GLY A 158 VAL A 183 1 26 HELIX 10 AB1 THR A 195 GLY A 206 1 12 HELIX 11 AB2 ASP A 215 ALA A 230 1 16 HELIX 12 AB3 ASN A 235 SER A 247 1 13 HELIX 13 AB4 ASN A 250 TRP A 263 1 14 HELIX 14 AB5 GLY A 269 ARG A 282 1 14 HELIX 15 AB6 ASP A 316 LEU A 330 1 15 HELIX 16 AB7 SER A 338 ALA A 349 1 12 HELIX 17 AB8 ASP A 366 LEU A 376 1 11 HELIX 18 AB9 PRO A 379 ARG A 381 5 3 HELIX 19 AC1 MET A 382 ASP A 404 1 23 SHEET 1 AA1 2 ALA A 8 LEU A 10 0 SHEET 2 AA1 2 ILE A 17 LEU A 19 -1 O ILE A 17 N LEU A 10 SHEET 1 AA2 2 ILE A 21 VAL A 22 0 SHEET 2 AA2 2 GLY A 30 ILE A 31 -1 O GLY A 30 N VAL A 22 SHEET 1 AA3 3 THR A 60 ASP A 63 0 SHEET 2 AA3 3 ILE A 68 TYR A 71 -1 O ARG A 70 N TYR A 61 SHEET 3 AA3 3 TYR A 74 PRO A 75 -1 O TYR A 74 N TYR A 71 CISPEP 1 GLY A 15 GLU A 16 0 -6.77 CISPEP 2 ALA A 66 GLY A 67 0 -8.40 CISPEP 3 GLU A 233 GLN A 234 0 9.60 CISPEP 4 ASP A 336 ASP A 337 0 -4.27 SITE 1 AC1 9 HIS A 229 HIS A 232 ASN A 235 HIS A 267 SITE 2 AC1 9 ARG A 318 PHE A 387 ARG A 391 ARG A 412 SITE 3 AC1 9 HOH A 608 CRYST1 148.767 148.767 182.797 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006722 0.003881 0.000000 0.00000 SCALE2 0.000000 0.007762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005471 0.00000