HEADER TRANSPORT PROTEIN 26-AUG-14 4R6Y TITLE CRYSTAL STRUCTURE OF SOLUTE-BINDING PROTEIN STM0429 FROM SALMONELLA TITLE 2 ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2, TARGET EFI- TITLE 3 510776, A CLOSED CONFORMATION, IN COMPLEX WITH GLYCEROL AND ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 2-AMINOETHYLPHOSPHONATE-BINDING PERIPLASMIC COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. LT2; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 GENE: PHNS, STM0429; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSPORTER, SBP-TYPE, TRANSPORT PROTEIN, EFI, STRUCTURAL GENOMICS, KEYWDS 2 ENZYME FUNCTION INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA,J.D.ATTONITO, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL,B.HILLERICH,J.LOVE, AUTHOR 3 K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 28-FEB-24 4R6Y 1 REMARK SEQADV REVDAT 1 10-SEP-14 4R6Y 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,N.AL OBAIDI,S.CHAMALA, JRNL AUTH 2 A.SCOTT GLENN,J.D.ATTONITO,S.CHOWDHURY,J.LAFLEUR,R.D.SIEDEL, JRNL AUTH 3 B.HILLERICH,J.LOVE,K.L.WHALEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 4 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF TRANSPORTER STM0429 FROM SALMONELLA JRNL TITL 2 ENTERICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 82436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4864 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2552 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2413 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3481 ; 1.914 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5570 ; 1.347 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 6.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;42.132 ;25.405 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;11.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2963 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 578 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 3.054 ; 1.161 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1292 ; 3.043 ; 1.160 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1622 ; 3.585 ; 1.970 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1623 ; 3.587 ; 1.972 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 5.375 ; 1.374 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1259 ; 5.372 ; 1.374 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1852 ; 4.801 ; 2.207 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3531 ; 5.690 ; 6.581 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3165 ; 5.213 ; 6.036 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4965 ; 5.287 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 93 ;32.491 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5342 ;12.643 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10 MM BIS-TRIS, 500 MM NACL, REMARK 280 5% GLYCEROL, 5 MM DTT, TEV PROTEASE (1:100); RESERVOIR: 0.17 M REMARK 280 AMMONIUM ACETATE, 0.085 M SODIUM CITRATE:HCL, PH 5.6, 25% REMARK 280 PEG4000, 15% GLYCEROL; VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.59250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.80050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.59250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.80050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 224 CG MET A 224 SD 0.195 REMARK 500 GLU A 274 CD GLU A 274 OE1 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 35 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 PHE A 45 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET A 219 CG - SD - CE ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 242 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 MET A 286 CG - SD - CE ANGL. DEV. = -20.9 DEGREES REMARK 500 VAL A 292 CG1 - CB - CG2 ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 75.20 -154.09 REMARK 500 PHE A 101 113.20 -160.32 REMARK 500 ALA A 106 -39.70 -36.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 105 ALA A 106 -148.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510776 RELATED DB: TARGETTRACK DBREF 4R6Y A 22 337 UNP P96062 PHNS_SALTY 22 337 SEQADV 4R6Y SER A 20 UNP P96062 EXPRESSION TAG SEQADV 4R6Y MET A 21 UNP P96062 EXPRESSION TAG SEQRES 1 A 318 SER MET GLU SER VAL VAL THR VAL TYR SER ILE ASP GLY SEQRES 2 A 318 LEU HIS ASP GLY ASP ASN SER TRP TYR GLN VAL GLN PHE SEQRES 3 A 318 ASP ALA PHE THR LYS ALA THR GLY ILE THR VAL ARG TYR SEQRES 4 A 318 VAL GLU GLY GLY GLY GLY VAL VAL VAL GLU ARG LEU ALA SEQRES 5 A 318 LYS GLU ARG THR ASN PRO GLN ALA ASP VAL LEU VAL THR SEQRES 6 A 318 ALA PRO PRO PHE ILE GLN ARG ALA ALA ALA GLU LYS LEU SEQRES 7 A 318 LEU ALA ASN PHE ASN THR ASP THR ALA SER ALA ILE PRO SEQRES 8 A 318 ASP ALA ASN ASN LEU TYR SER PRO LEU VAL LYS ASN TYR SEQRES 9 A 318 LEU SER PHE ILE TYR ASN SER LYS LEU LEU LYS THR ALA SEQRES 10 A 318 PRO ALA SER TRP GLN ASP LEU LEU ASP GLY LYS PHE LYS SEQRES 11 A 318 ASN LYS LEU GLN TYR SER THR PRO GLY GLN ALA ALA ASP SEQRES 12 A 318 GLY THR ALA VAL MET LEU GLN ALA PHE HIS SER PHE GLY SEQRES 13 A 318 SER LYS ASP ALA GLY PHE ALA TYR LEU GLY LYS LEU GLN SEQRES 14 A 318 ALA ASN ASN VAL GLY PRO SER ALA SER THR GLY LYS LEU SEQRES 15 A 318 THR ALA LEU VAL ASN LYS GLY GLU ILE TYR VAL ALA ASN SEQRES 16 A 318 GLY ASP LEU GLN MET ASN LEU ALA GLN MET GLU ARG ASN SEQRES 17 A 318 PRO ASN VAL LYS ILE PHE TRP PRO ALA ASN ASP LYS GLY SEQRES 18 A 318 GLU ARG SER ALA LEU ALA ILE PRO TYR VAL ILE GLY LEU SEQRES 19 A 318 VAL GLN GLY ALA PRO GLN SER GLU ASN GLY LYS LYS LEU SEQRES 20 A 318 ILE ASN PHE LEU LEU SER LYS GLU ALA GLN THR ARG VAL SEQRES 21 A 318 SER GLU LEU SER TRP GLY MET PRO VAL ARG SER ASP VAL SEQRES 22 A 318 THR PRO SER ASP GLU HIS TYR LYS ALA ALA THR ALA ALA SEQRES 23 A 318 LEU GLU GLY VAL GLN SER TRP GLN PRO ASN TRP ASP ASP SEQRES 24 A 318 VAL ALA VAL SER LEU SER ALA ASP ILE SER ARG TRP HIS SEQRES 25 A 318 LYS VAL THR GLU SER GLU HET GOL A 401 6 HET ACT A 402 4 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *521(H2 O) HELIX 1 1 SER A 39 GLY A 53 1 15 HELIX 2 2 GLY A 62 GLU A 73 1 12 HELIX 3 3 PRO A 87 GLU A 95 1 9 HELIX 4 4 THR A 105 ILE A 109 5 5 HELIX 5 5 TRP A 140 LYS A 149 5 10 HELIX 6 6 ALA A 160 GLY A 175 1 16 HELIX 7 7 SER A 176 GLN A 188 1 13 HELIX 8 8 LYS A 200 LYS A 207 1 8 HELIX 9 9 LEU A 217 MET A 224 1 8 HELIX 10 10 GLN A 259 LEU A 271 1 13 HELIX 11 11 SER A 272 THR A 277 1 6 HELIX 12 12 ARG A 278 TRP A 284 1 7 HELIX 13 13 ASP A 296 GLU A 307 1 12 HELIX 14 14 ASN A 315 SER A 336 1 22 SHEET 1 A 6 ILE A 54 GLY A 61 0 SHEET 2 A 6 SER A 23 ILE A 30 1 N VAL A 25 O ARG A 57 SHEET 3 A 6 VAL A 81 THR A 84 1 O VAL A 81 N TYR A 28 SHEET 4 A 6 TYR A 249 LEU A 253 -1 O GLY A 252 N LEU A 82 SHEET 5 A 6 SER A 117 LYS A 121 -1 N LEU A 119 O TYR A 249 SHEET 6 A 6 MET A 286 PRO A 287 -1 O MET A 286 N LYS A 121 SHEET 1 B 4 LEU A 152 GLN A 153 0 SHEET 2 B 4 VAL A 212 ASP A 216 1 O VAL A 212 N GLN A 153 SHEET 3 B 4 LEU A 124 ASN A 129 -1 N ILE A 127 O ALA A 213 SHEET 4 B 4 VAL A 230 PHE A 233 -1 O LYS A 231 N TYR A 128 SHEET 1 C 2 SER A 243 LEU A 245 0 SHEET 2 C 2 GLN A 310 TRP A 312 1 O GLN A 310 N ALA A 244 CISPEP 1 PRO A 86 PRO A 87 0 1.73 SITE 1 AC1 9 SER A 20 ASP A 31 ALA A 85 ASN A 122 SITE 2 AC1 9 ILE A 247 TYR A 249 HOH A 534 HOH A 589 SITE 3 AC1 9 HOH A 788 SITE 1 AC2 7 ALA A 160 ALA A 161 ASP A 162 SER A 197 SITE 2 AC2 7 THR A 198 HOH A 506 HOH A 713 CRYST1 55.185 67.601 77.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018121 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012927 0.00000