HEADER TRANSFERASE 13-MAR-14 4P52 TITLE CRYSTAL STRUCTURE OF HOMOSERINE KINASE FROM CYTOPHAGA HUTCHINSONII TITLE 2 ATCC 33406, NYSGRC TARGET 032717. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSK; COMPND 5 EC: 2.7.1.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII; SOURCE 3 ORGANISM_TAXID: 269798; SOURCE 4 STRAIN: ATCC 33406 / NCIMB 9469; SOURCE 5 GENE: THRB, CHU_0074; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI- KEYWDS 2 BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI,S.GARFORTH, AUTHOR 2 A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA,S.LIM, AUTHOR 3 A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE,A.FISER,R.SEIDEL,J.B.BONANNO, AUTHOR 4 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 27-DEC-23 4P52 1 REMARK REVDAT 3 27-SEP-17 4P52 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 06-AUG-14 4P52 1 AUTHOR REVDAT 1 02-APR-14 4P52 0 JRNL AUTH V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI, JRNL AUTH 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN, JRNL AUTH 3 S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE, JRNL AUTH 4 A.FISER,R.SEIDEL,J.B.BONANNO,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF HOMOSERINE KINASE FROM CYTOPHAGA JRNL TITL 2 HUTCHINSONII ATCC 33406, NYSGRC TARGET 032717. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2329 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -1.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2365 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3205 ; 1.474 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;41.886 ;25.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;15.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1744 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 1.970 ; 6.166 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1569 ; 3.338 ;98.921 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 4.285 ; 7.434 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -8 A 332 REMARK 3 ORIGIN FOR THE GROUP (A): 60.9524 29.8655 17.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0662 REMARK 3 T33: 0.0309 T12: -0.0156 REMARK 3 T13: 0.0043 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.5616 L22: 1.1477 REMARK 3 L33: 1.5599 L12: 0.2862 REMARK 3 L13: -0.2517 L23: -0.6302 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.0231 S13: -0.0739 REMARK 3 S21: -0.0533 S22: -0.0420 S23: -0.0781 REMARK 3 S31: 0.1919 S32: 0.0186 S33: 0.0473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4P52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA2HPO4/KH2PO4, PH 6.2, 2.5M REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.32733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.65467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.32733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 130.65467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.32733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 130.65467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.32733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 130.65467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 152.41200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.99511 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 50.80400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 87.99511 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 65.32733 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 446 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 273 C GLU A 274 N 0.266 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 273 O - C - N ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -45.73 72.18 REMARK 500 SER A 17 -106.83 71.37 REMARK 500 PRO A 30 -152.16 -86.69 REMARK 500 SER A 48 140.36 -174.89 REMARK 500 SER A 137 117.84 -173.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 273 -15.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-032717 RELATED DB: TARGETTRACK DBREF 4P52 A 1 309 UNP Q11YZ8 Q11YZ8_CYTH3 1 309 SEQADV 4P52 MSE A -21 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 HIS A -20 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 HIS A -19 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 HIS A -18 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 HIS A -17 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 HIS A -16 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 HIS A -15 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 SER A -14 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 SER A -13 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 GLY A -12 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 VAL A -11 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 ASP A -10 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 LEU A -9 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 GLY A -8 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 THR A -7 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 GLU A -6 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 ASN A -5 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 LEU A -4 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 TYR A -3 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 PHE A -2 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 GLN A -1 UNP Q11YZ8 EXPRESSION TAG SEQADV 4P52 SER A 0 UNP Q11YZ8 EXPRESSION TAG SEQRES 1 A 331 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 331 GLY THR GLU ASN LEU TYR PHE GLN SER MSE LYS ASP SER SEQRES 3 A 331 ILE LYS VAL PHE ALA PRO ALA THR VAL ALA ASN VAL SER SEQRES 4 A 331 CYS GLY PHE ASP VAL LEU GLY PHE ALA VAL ASP ASN PRO SEQRES 5 A 331 GLY ASP GLU VAL LEU LEU ARG LEU SER ASP LYS LYS GLY SEQRES 6 A 331 VAL ARG ILE THR SER ILE THR GLY ASP ASP GLY ARG LEU SEQRES 7 A 331 PRO LYS ASP ALA GLU LYS ASN THR VAL SER ILE SER ILE SEQRES 8 A 331 LEU ARG TYR LEU GLU THR LEU GLY ILE GLU GLN GLY ILE SEQRES 9 A 331 GLU ILE GLU LEU THR LYS LYS MSE PRO LEU GLY SER GLY SEQRES 10 A 331 LEU GLY SER SER ALA ALA SER THR VAL ALA GLY VAL TYR SEQRES 11 A 331 ALA ILE ASN GLN LEU LEU GLY ASN LYS MSE GLU VAL LYS SEQRES 12 A 331 ASP LEU LEU PRO PHE ALA MSE GLU GLY GLU PHE LEU ALA SEQRES 13 A 331 CYS GLY SER ALA HIS ALA ASP ASN VAL ALA PRO CYS LEU SEQRES 14 A 331 TYR GLY GLY PHE VAL LEU VAL ARG SER TYR ASP PRO LEU SEQRES 15 A 331 ASP VAL VAL LYS LEU PRO VAL PRO ALA ASN LEU TYR ALA SEQRES 16 A 331 THR ILE ILE HIS PRO HIS VAL GLU VAL GLN THR LYS ASP SEQRES 17 A 331 ALA ARG ASN ILE LEU PRO LYS GLN ILE ALA LEU SER GLN SEQRES 18 A 331 ALA VAL ALA GLN TRP GLY ASN VAL GLY GLY LEU VAL ALA SEQRES 19 A 331 GLY LEU LEU MSE ASN ASP THR SER LEU ILE GLY ARG SER SEQRES 20 A 331 MSE GLN ASP HIS ILE VAL GLU PRO ALA ARG SER VAL LEU SEQRES 21 A 331 ILE PRO GLY PHE ASP ASP VAL LYS LYS ALA ALA LEU ASP SEQRES 22 A 331 ALA GLY ALA LEU GLY CYS SER ILE SER GLY SER GLY PRO SEQRES 23 A 331 SER ILE PHE ALA LEU SER THR SER GLN GLU ALA ALA GLN SEQRES 24 A 331 LYS ILE GLY GLN ALA MSE LYS LYS GLY PHE ASP ALA ILE SEQRES 25 A 331 ASN ILE GLY SER ASP VAL TYR VAL SER THR VAL ASN GLN SEQRES 26 A 331 GLN GLY PRO LYS VAL ILE MODRES 4P52 MSE A 1 MET MODIFIED RESIDUE MODRES 4P52 MSE A 90 MET MODIFIED RESIDUE MODRES 4P52 MSE A 118 MET MODIFIED RESIDUE MODRES 4P52 MSE A 128 MET MODIFIED RESIDUE MODRES 4P52 MSE A 216 MET MODIFIED RESIDUE MODRES 4P52 MSE A 226 MET MODIFIED RESIDUE MODRES 4P52 MSE A 283 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 90 8 HET MSE A 118 8 HET MSE A 128 8 HET MSE A 216 8 HET MSE A 226 8 HET MSE A 283 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *122(H2 O) HELIX 1 AA1 ASN A 63 GLY A 77 1 15 HELIX 2 AA2 GLY A 97 LEU A 114 1 18 HELIX 3 AA3 GLU A 119 ASP A 122 5 4 HELIX 4 AA4 LEU A 123 GLY A 136 1 14 HELIX 5 AA5 HIS A 139 GLY A 149 1 11 HELIX 6 AA6 GLN A 183 ILE A 190 1 8 HELIX 7 AA7 ALA A 196 MSE A 216 1 21 HELIX 8 AA8 ASP A 218 MSE A 226 1 9 HELIX 9 AA9 ILE A 230 SER A 236 1 7 HELIX 10 AB1 VAL A 237 ILE A 239 5 3 HELIX 11 AB2 GLY A 241 ALA A 252 1 12 HELIX 12 AB3 SER A 272 ALA A 289 1 18 SHEET 1 AA1 5 VAL A 44 THR A 50 0 SHEET 2 AA1 5 GLY A 81 LYS A 88 1 O LEU A 86 N SER A 48 SHEET 3 AA1 5 LEU A 23 SER A 39 -1 N GLU A 33 O THR A 87 SHEET 4 AA1 5 PHE A 151 SER A 156 -1 O VAL A 152 N GLY A 24 SHEET 5 AA1 5 ASP A 161 LEU A 165 -1 O LEU A 165 N PHE A 151 SHEET 1 AA2 5 VAL A 44 THR A 50 0 SHEET 2 AA2 5 GLY A 81 LYS A 88 1 O LEU A 86 N SER A 48 SHEET 3 AA2 5 LEU A 23 SER A 39 -1 N GLU A 33 O THR A 87 SHEET 4 AA2 5 SER A 4 ALA A 14 -1 N VAL A 13 O PHE A 25 SHEET 5 AA2 5 LYS A 307 VAL A 308 -1 O LYS A 307 N PHE A 8 SHEET 1 AA3 4 GLY A 256 ILE A 259 0 SHEET 2 AA3 4 ILE A 266 SER A 270 -1 O PHE A 267 N SER A 258 SHEET 3 AA3 4 TYR A 172 PRO A 178 -1 N TYR A 172 O SER A 270 SHEET 4 AA3 4 SER A 294 THR A 300 -1 O SER A 299 N ALA A 173 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LYS A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N PRO A 91 1555 1555 1.34 LINK C LYS A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N GLU A 119 1555 1555 1.33 LINK C ALA A 127 N MSE A 128 1555 1555 1.34 LINK C MSE A 128 N GLU A 129 1555 1555 1.34 LINK C LEU A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N ASN A 217 1555 1555 1.32 LINK C SER A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N GLN A 227 1555 1555 1.33 LINK C ALA A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N LYS A 284 1555 1555 1.34 CISPEP 1 ASN A 29 PRO A 30 0 -2.61 CISPEP 2 ASP A 158 PRO A 159 0 1.15 CISPEP 3 GLY A 263 PRO A 264 0 1.89 CRYST1 101.608 101.608 195.982 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009842 0.005682 0.000000 0.00000 SCALE2 0.000000 0.011364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005103 0.00000