HEADER OXIDOREDUCTASE 12-MAR-14 4P4G TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE TITLE 2 DEHYDROGENASE CAVEAT 4P4G SKM A 301 HAS WRONG CHIRALITY AT ATOM C8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE 5-DEHYDROGENASE AROE (5-DEHYDROSHIKIMATE COMPND 3 REDUCTASE); COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: SHIKIMATE 5-DEHYDROGENASE; COMPND 6 EC: 1.1.1.25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: AROE, MT2629, RV2552C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS SHIKIMATE DEHYDROGENASE, AROE, STRUCTURAL GENOMICS, TB STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, TBSGC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LALGONDAR,J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 27-DEC-23 4P4G 1 REMARK REVDAT 3 25-DEC-19 4P4G 1 REMARK REVDAT 2 20-SEP-17 4P4G 1 SOURCE JRNL REMARK REVDAT 1 18-MAR-15 4P4G 0 JRNL AUTH M.LALGONDAR,J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE JRNL TITL 2 DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 47232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2311 - 4.0911 1.00 3520 154 0.2000 0.2318 REMARK 3 2 4.0911 - 3.2474 1.00 3366 147 0.1715 0.2255 REMARK 3 3 3.2474 - 2.8369 1.00 3319 145 0.1829 0.2130 REMARK 3 4 2.8369 - 2.5776 1.00 3296 144 0.1945 0.2482 REMARK 3 5 2.5776 - 2.3928 1.00 3290 142 0.1856 0.2536 REMARK 3 6 2.3928 - 2.2518 1.00 3267 142 0.1747 0.2340 REMARK 3 7 2.2518 - 2.1390 1.00 3257 143 0.1738 0.1945 REMARK 3 8 2.1390 - 2.0459 1.00 3248 142 0.1723 0.2223 REMARK 3 9 2.0459 - 1.9671 0.99 3229 141 0.1687 0.1972 REMARK 3 10 1.9671 - 1.8992 0.99 3194 139 0.1670 0.2087 REMARK 3 11 1.8992 - 1.8398 0.98 3177 141 0.1736 0.2197 REMARK 3 12 1.8398 - 1.7873 0.97 3147 134 0.1992 0.2536 REMARK 3 13 1.7873 - 1.7402 0.95 3057 129 0.2171 0.2568 REMARK 3 14 1.7402 - 1.7000 0.89 2895 127 0.2363 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3843 REMARK 3 ANGLE : 1.103 5259 REMARK 3 CHIRALITY : 0.068 626 REMARK 3 PLANARITY : 0.006 684 REMARK 3 DIHEDRAL : 11.838 1307 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6109 39.5331 55.9614 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0383 REMARK 3 T33: 0.0602 T12: -0.0099 REMARK 3 T13: -0.0099 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.6255 L22: 1.1359 REMARK 3 L33: 2.0527 L12: -0.2214 REMARK 3 L13: -0.6607 L23: -0.2058 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0683 S13: 0.0918 REMARK 3 S21: 0.0549 S22: 0.0322 S23: -0.0375 REMARK 3 S31: -0.1044 S32: 0.0135 S33: 0.0176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3316 23.0474 43.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0907 REMARK 3 T33: 0.0659 T12: -0.0059 REMARK 3 T13: -0.0219 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.2498 L22: 1.6361 REMARK 3 L33: 0.7166 L12: -0.4836 REMARK 3 L13: -0.4376 L23: 0.3573 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0010 S13: -0.0912 REMARK 3 S21: -0.0242 S22: -0.0366 S23: 0.1321 REMARK 3 S31: 0.0241 S32: -0.1073 S33: 0.0084 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3417 39.4475 41.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.0794 REMARK 3 T33: 0.0752 T12: -0.0063 REMARK 3 T13: -0.0059 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.8122 L22: 3.8845 REMARK 3 L33: 1.7911 L12: -0.1001 REMARK 3 L13: -0.3962 L23: 1.2018 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: 0.0630 S13: 0.1085 REMARK 3 S21: -0.0899 S22: -0.0235 S23: 0.0256 REMARK 3 S31: -0.0631 S32: -0.0283 S33: -0.0126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7699 34.8832 72.1135 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.0431 REMARK 3 T33: 0.0701 T12: 0.0101 REMARK 3 T13: 0.0099 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5034 L22: 0.5095 REMARK 3 L33: 1.6788 L12: -0.5302 REMARK 3 L13: 0.4552 L23: -0.3212 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: 0.1659 S13: 0.0716 REMARK 3 S21: -0.0694 S22: -0.1009 S23: -0.0456 REMARK 3 S31: 0.0626 S32: 0.1037 S33: 0.0214 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2369 46.1998 84.9134 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.0925 REMARK 3 T33: 0.0783 T12: 0.0026 REMARK 3 T13: -0.0061 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.4088 L22: 2.4795 REMARK 3 L33: 3.2545 L12: -0.8551 REMARK 3 L13: 0.7176 L23: 0.2931 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.0756 S13: 0.0255 REMARK 3 S21: -0.0296 S22: -0.0402 S23: 0.0907 REMARK 3 S31: -0.0856 S32: -0.1082 S33: 0.0261 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7947 53.7228 85.7476 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.0945 REMARK 3 T33: 0.1017 T12: 0.0161 REMARK 3 T13: -0.0094 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.2653 L22: 2.1151 REMARK 3 L33: 1.7078 L12: 1.0200 REMARK 3 L13: 0.3682 L23: 0.8197 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: 0.0182 S13: 0.2360 REMARK 3 S21: -0.1062 S22: -0.0622 S23: 0.2266 REMARK 3 S31: -0.1807 S32: -0.2051 S33: 0.0876 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 236 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9726 36.5736 86.1965 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0544 REMARK 3 T33: 0.0580 T12: 0.0047 REMARK 3 T13: 0.0003 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.3938 L22: 3.5891 REMARK 3 L33: 2.2026 L12: 0.1561 REMARK 3 L13: -0.0263 L23: 0.7797 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.0200 S13: 0.1343 REMARK 3 S21: 0.0920 S22: 0.0176 S23: 0.0658 REMARK 3 S31: -0.0439 S32: -0.0565 S33: -0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M SODIUM CITRATE PH 6.2, 1.54 M REMARK 280 (NH4)2SO4, 2.7 % 1,6-HEXANEDIOL, 0.1 M GUANIDINE HCL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.73350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.85400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.77650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.85400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.73350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.77650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 270 REMARK 465 ASP A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLY B 4 REMARK 465 PHE B 173 REMARK 465 ASP B 174 REMARK 465 SER B 175 REMARK 465 GLY B 176 REMARK 465 GLY B 177 REMARK 465 LEU B 270 REMARK 465 ASP B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 259 O HOH B 544 1.95 REMARK 500 OE1 GLU A 259 O HOH A 401 2.00 REMARK 500 O HOH B 485 O HOH B 492 2.08 REMARK 500 O HOH B 467 O HOH B 473 2.08 REMARK 500 ND1 HIS A 119 OD1 ASP A 143 2.14 REMARK 500 NZ LYS B 7 O HOH B 643 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 43 119.33 -160.90 REMARK 500 ALA A 117 -3.24 -145.48 REMARK 500 LEU B 33 58.48 -95.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 631 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 633 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SKM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P4L RELATED DB: PDB REMARK 900 RELATED ID: 4P4N RELATED DB: PDB DBREF 4P4G A 1 269 UNP P95001 P95001_MYCTU 1 269 DBREF 4P4G B 1 269 UNP P95001 P95001_MYCTU 1 269 SEQADV 4P4G LEU A 270 UNP P95001 EXPRESSION TAG SEQADV 4P4G ASP A 271 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS A 272 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS A 273 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS A 274 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS A 275 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS A 276 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS A 277 UNP P95001 EXPRESSION TAG SEQADV 4P4G LEU B 270 UNP P95001 EXPRESSION TAG SEQADV 4P4G ASP B 271 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS B 272 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS B 273 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS B 274 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS B 275 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS B 276 UNP P95001 EXPRESSION TAG SEQADV 4P4G HIS B 277 UNP P95001 EXPRESSION TAG SEQRES 1 A 277 MET SER GLU GLY PRO LYS LYS ALA GLY VAL LEU GLY SER SEQRES 2 A 277 PRO ILE ALA HIS SER ARG SER PRO GLN LEU HIS LEU ALA SEQRES 3 A 277 ALA TYR ARG ALA LEU GLY LEU HIS ASP TRP THR TYR GLU SEQRES 4 A 277 ARG ILE GLU CYS GLY ALA ALA GLU LEU PRO VAL VAL VAL SEQRES 5 A 277 GLY GLY PHE GLY PRO GLU TRP VAL GLY VAL SER VAL THR SEQRES 6 A 277 MET PRO GLY LYS PHE ALA ALA LEU ARG PHE ALA ASP GLU SEQRES 7 A 277 ARG THR ALA ARG ALA ASP LEU VAL GLY SER ALA ASN THR SEQRES 8 A 277 LEU VAL ARG THR PRO HIS GLY TRP ARG ALA ASP ASN THR SEQRES 9 A 277 ASP ILE ASP GLY VAL ALA GLY ALA LEU GLY ALA ALA ALA SEQRES 10 A 277 GLY HIS ALA LEU VAL LEU GLY SER GLY GLY THR ALA PRO SEQRES 11 A 277 ALA ALA VAL VAL GLY LEU ALA GLU LEU GLY VAL THR ASP SEQRES 12 A 277 ILE THR VAL VAL ALA ARG ASN SER ASP LYS ALA ALA ARG SEQRES 13 A 277 LEU VAL ASP LEU GLY THR ARG VAL GLY VAL ALA THR ARG SEQRES 14 A 277 PHE CYS ALA PHE ASP SER GLY GLY LEU ALA ASP ALA VAL SEQRES 15 A 277 ALA ALA ALA GLU VAL LEU VAL SER THR ILE PRO ALA GLU SEQRES 16 A 277 VAL ALA ALA GLY TYR ALA GLY THR LEU ALA ALA ILE PRO SEQRES 17 A 277 VAL LEU LEU ASP ALA ILE TYR ASP PRO TRP PRO THR PRO SEQRES 18 A 277 LEU ALA ALA ALA VAL GLY SER ALA GLY GLY ARG VAL ILE SEQRES 19 A 277 SER GLY LEU GLN MET LEU LEU HIS GLN ALA PHE ALA GLN SEQRES 20 A 277 VAL GLU GLN PHE THR GLY LEU PRO ALA PRO ARG GLU ALA SEQRES 21 A 277 MET THR CYS ALA LEU ALA ALA LEU ASP LEU ASP HIS HIS SEQRES 22 A 277 HIS HIS HIS HIS SEQRES 1 B 277 MET SER GLU GLY PRO LYS LYS ALA GLY VAL LEU GLY SER SEQRES 2 B 277 PRO ILE ALA HIS SER ARG SER PRO GLN LEU HIS LEU ALA SEQRES 3 B 277 ALA TYR ARG ALA LEU GLY LEU HIS ASP TRP THR TYR GLU SEQRES 4 B 277 ARG ILE GLU CYS GLY ALA ALA GLU LEU PRO VAL VAL VAL SEQRES 5 B 277 GLY GLY PHE GLY PRO GLU TRP VAL GLY VAL SER VAL THR SEQRES 6 B 277 MET PRO GLY LYS PHE ALA ALA LEU ARG PHE ALA ASP GLU SEQRES 7 B 277 ARG THR ALA ARG ALA ASP LEU VAL GLY SER ALA ASN THR SEQRES 8 B 277 LEU VAL ARG THR PRO HIS GLY TRP ARG ALA ASP ASN THR SEQRES 9 B 277 ASP ILE ASP GLY VAL ALA GLY ALA LEU GLY ALA ALA ALA SEQRES 10 B 277 GLY HIS ALA LEU VAL LEU GLY SER GLY GLY THR ALA PRO SEQRES 11 B 277 ALA ALA VAL VAL GLY LEU ALA GLU LEU GLY VAL THR ASP SEQRES 12 B 277 ILE THR VAL VAL ALA ARG ASN SER ASP LYS ALA ALA ARG SEQRES 13 B 277 LEU VAL ASP LEU GLY THR ARG VAL GLY VAL ALA THR ARG SEQRES 14 B 277 PHE CYS ALA PHE ASP SER GLY GLY LEU ALA ASP ALA VAL SEQRES 15 B 277 ALA ALA ALA GLU VAL LEU VAL SER THR ILE PRO ALA GLU SEQRES 16 B 277 VAL ALA ALA GLY TYR ALA GLY THR LEU ALA ALA ILE PRO SEQRES 17 B 277 VAL LEU LEU ASP ALA ILE TYR ASP PRO TRP PRO THR PRO SEQRES 18 B 277 LEU ALA ALA ALA VAL GLY SER ALA GLY GLY ARG VAL ILE SEQRES 19 B 277 SER GLY LEU GLN MET LEU LEU HIS GLN ALA PHE ALA GLN SEQRES 20 B 277 VAL GLU GLN PHE THR GLY LEU PRO ALA PRO ARG GLU ALA SEQRES 21 B 277 MET THR CYS ALA LEU ALA ALA LEU ASP LEU ASP HIS HIS SEQRES 22 B 277 HIS HIS HIS HIS HET SKM A 301 12 HET BR A 302 1 HET BR A 303 1 HET BR A 304 1 HET BR A 305 1 HET BR A 306 1 HET BR A 307 1 HET SO4 A 308 5 HET SO4 A 309 5 HET BR B 301 1 HET SO4 B 302 5 HETNAM SKM (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC HETNAM 2 SKM ACID HETNAM BR BROMIDE ION HETNAM SO4 SULFATE ION HETSYN SKM SHIKIMATE FORMUL 3 SKM C7 H10 O5 FORMUL 4 BR 7(BR 1-) FORMUL 10 SO4 3(O4 S 2-) FORMUL 14 HOH *495(H2 O) HELIX 1 AA1 ARG A 19 LEU A 31 1 13 HELIX 2 AA2 GLU A 47 GLY A 54 1 8 HELIX 3 AA3 GLY A 68 ALA A 76 1 9 HELIX 4 AA4 THR A 80 GLY A 87 1 8 HELIX 5 AA5 THR A 104 GLY A 114 1 11 HELIX 6 AA6 THR A 128 GLY A 140 1 13 HELIX 7 AA7 ASN A 150 VAL A 164 1 15 HELIX 8 AA8 GLY A 177 ALA A 185 1 9 HELIX 9 AA9 PRO A 193 ALA A 198 1 6 HELIX 10 AB1 TYR A 200 ALA A 205 1 6 HELIX 11 AB2 THR A 220 GLY A 230 1 11 HELIX 12 AB3 SER A 235 GLY A 253 1 19 HELIX 13 AB4 PRO A 257 LEU A 268 1 12 HELIX 14 AB5 ARG B 19 GLY B 32 1 14 HELIX 15 AB6 GLU B 47 GLY B 54 1 8 HELIX 16 AB7 GLY B 68 ALA B 76 1 9 HELIX 17 AB8 THR B 80 GLY B 87 1 8 HELIX 18 AB9 THR B 104 GLY B 114 1 11 HELIX 19 AC1 THR B 128 GLY B 140 1 13 HELIX 20 AC2 ASN B 150 VAL B 164 1 15 HELIX 21 AC3 ALA B 179 ALA B 185 1 7 HELIX 22 AC4 PRO B 193 ALA B 198 1 6 HELIX 23 AC5 TYR B 200 ALA B 205 1 6 HELIX 24 AC6 THR B 220 GLY B 230 1 11 HELIX 25 AC7 SER B 235 GLY B 253 1 19 HELIX 26 AC8 PRO B 257 LEU B 268 1 12 SHEET 1 AA1 6 THR A 37 GLU A 42 0 SHEET 2 AA1 6 LYS A 7 GLY A 12 1 N VAL A 10 O ILE A 41 SHEET 3 AA1 6 TRP A 59 VAL A 64 1 O SER A 63 N GLY A 9 SHEET 4 AA1 6 THR A 91 THR A 95 -1 O LEU A 92 N VAL A 62 SHEET 5 AA1 6 GLY A 98 ASP A 102 -1 O GLY A 98 N THR A 95 SHEET 6 AA1 6 GLU A 78 ARG A 79 1 N GLU A 78 O ALA A 101 SHEET 1 AA2 6 ALA A 167 ALA A 172 0 SHEET 2 AA2 6 ASP A 143 ALA A 148 1 N VAL A 146 O ARG A 169 SHEET 3 AA2 6 HIS A 119 LEU A 123 1 N VAL A 122 O VAL A 147 SHEET 4 AA2 6 VAL A 187 SER A 190 1 O VAL A 189 N LEU A 121 SHEET 5 AA2 6 VAL A 209 ASP A 212 1 O LEU A 211 N LEU A 188 SHEET 6 AA2 6 ARG A 232 ILE A 234 1 O ARG A 232 N LEU A 210 SHEET 1 AA3 6 THR B 37 GLU B 42 0 SHEET 2 AA3 6 LYS B 7 GLY B 12 1 N VAL B 10 O ILE B 41 SHEET 3 AA3 6 GLY B 61 VAL B 64 1 O SER B 63 N GLY B 9 SHEET 4 AA3 6 THR B 91 THR B 95 -1 O LEU B 92 N VAL B 62 SHEET 5 AA3 6 GLY B 98 ASP B 102 -1 O GLY B 98 N THR B 95 SHEET 6 AA3 6 GLU B 78 ARG B 79 1 N GLU B 78 O ALA B 101 SHEET 1 AA4 6 ALA B 167 CYS B 171 0 SHEET 2 AA4 6 ASP B 143 VAL B 147 1 N VAL B 146 O ARG B 169 SHEET 3 AA4 6 HIS B 119 LEU B 123 1 N VAL B 122 O VAL B 147 SHEET 4 AA4 6 VAL B 187 SER B 190 1 O VAL B 189 N LEU B 121 SHEET 5 AA4 6 VAL B 209 ASP B 212 1 O LEU B 211 N LEU B 188 SHEET 6 AA4 6 ARG B 232 ILE B 234 1 O ILE B 234 N LEU B 210 CISPEP 1 SER A 13 PRO A 14 0 -1.88 CISPEP 2 MET A 66 PRO A 67 0 2.79 CISPEP 3 ASP A 216 PRO A 217 0 -3.48 CISPEP 4 TRP A 218 PRO A 219 0 0.89 CISPEP 5 SER B 13 PRO B 14 0 -1.12 CISPEP 6 MET B 66 PRO B 67 0 2.32 CISPEP 7 ASP B 216 PRO B 217 0 1.13 CISPEP 8 TRP B 218 PRO B 219 0 5.78 SITE 1 AC1 12 SER A 18 SER A 20 SER A 63 VAL A 64 SITE 2 AC1 12 THR A 65 LYS A 69 ASN A 90 ASP A 105 SITE 3 AC1 12 TYR A 215 GLN A 243 GLN A 247 HOH A 507 SITE 1 AC2 2 PRO A 67 LYS A 69 SITE 1 AC3 3 LYS A 7 GLY A 56 HOH A 425 SITE 1 AC4 3 ARG A 149 ARG B 100 HOH B 479 SITE 1 AC5 2 ALA A 179 HOH A 577 SITE 1 AC6 3 ARG A 100 HOH A 454 HOH A 595 SITE 1 AC7 2 SER A 235 GLN A 238 SITE 1 AC8 7 GLY A 124 SER A 125 ALA A 148 ARG A 149 SITE 2 AC8 7 ASN A 150 HOH A 534 HOH A 627 SITE 1 AC9 8 ASP A 152 LYS A 153 ARG A 156 HOH A 560 SITE 2 AC9 8 HOH A 612 ARG B 94 TRP B 99 HOH B 529 SITE 1 AD1 2 SER B 18 SER B 20 SITE 1 AD2 5 GLY B 124 SER B 125 ALA B 148 ARG B 149 SITE 2 AD2 5 ASN B 150 CRYST1 43.467 75.553 129.708 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023006 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007710 0.00000