HEADER LYASE 15-AUG-13 4MA5 TITLE THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE TITLE 2 ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 IN TITLE 3 COMPLEX WITH AN ATP ANALOG, AMP-PNP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS; SOURCE 3 ORGANISM_TAXID: 177416; SOURCE 4 STRAIN: SCHU S4; SOURCE 5 GENE: FTT_0897, PURK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG28 KEYWDS STRUCTURAL GENOMICS, THE CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS KEYWDS 3 DISEASES, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 06-DEC-23 4MA5 1 REMARK REVDAT 4 20-SEP-23 4MA5 1 REMARK LINK REVDAT 3 21-DEC-16 4MA5 1 REMARK SEQADV SEQRES REVDAT 2 25-SEP-13 4MA5 1 AUTHOR REVDAT 1 28-AUG-13 4MA5 0 JRNL AUTH K.TAN,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE JRNL TITL 2 CARBOXYLASE ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. JRNL TITL 3 TULARENSIS SCHU S4 IN COMPLEX WITH AN ATP ANALOG, AMP-PNP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 34667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8643 - 4.1380 0.89 2747 135 0.1692 0.1983 REMARK 3 2 4.1380 - 3.2863 0.93 2721 137 0.1605 0.1924 REMARK 3 3 3.2863 - 2.8715 0.95 2723 164 0.1780 0.2188 REMARK 3 4 2.8715 - 2.6092 0.96 2741 142 0.1835 0.2584 REMARK 3 5 2.6092 - 2.4223 0.96 2743 151 0.1825 0.2315 REMARK 3 6 2.4223 - 2.2795 0.96 2744 148 0.1749 0.2289 REMARK 3 7 2.2795 - 2.1654 0.97 2744 149 0.1620 0.2155 REMARK 3 8 2.1654 - 2.0712 0.97 2753 132 0.1670 0.2065 REMARK 3 9 2.0712 - 1.9915 0.98 2755 156 0.1722 0.2184 REMARK 3 10 1.9915 - 1.9228 0.98 2745 146 0.1789 0.2538 REMARK 3 11 1.9228 - 1.8627 0.98 2752 139 0.1999 0.2464 REMARK 3 12 1.8627 - 1.8095 0.98 2769 131 0.2233 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2883 REMARK 3 ANGLE : 1.180 3911 REMARK 3 CHIRALITY : 0.081 458 REMARK 3 PLANARITY : 0.004 497 REMARK 3 DIHEDRAL : 14.901 1040 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2904 20.3466 36.0988 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.2473 REMARK 3 T33: 0.2183 T12: -0.0138 REMARK 3 T13: -0.0218 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.4940 L22: 1.0355 REMARK 3 L33: 2.1413 L12: 0.0494 REMARK 3 L13: -0.4433 L23: -0.1629 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.1448 S13: -0.0248 REMARK 3 S21: -0.1434 S22: -0.0370 S23: 0.1077 REMARK 3 S31: 0.0760 S32: -0.3076 S33: 0.0480 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4011 20.7759 18.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.2464 REMARK 3 T33: 0.2561 T12: -0.0214 REMARK 3 T13: 0.0528 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2060 L22: 1.3748 REMARK 3 L33: 2.8453 L12: -0.0709 REMARK 3 L13: 0.2226 L23: 1.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.1181 S13: -0.1092 REMARK 3 S21: -0.1190 S22: 0.0788 S23: -0.1484 REMARK 3 S31: 0.1384 S32: 0.2948 S33: -0.0943 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2767 24.5933 39.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.2121 REMARK 3 T33: 0.2374 T12: -0.0297 REMARK 3 T13: 0.0244 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0639 L22: 1.3160 REMARK 3 L33: 1.8771 L12: -0.5138 REMARK 3 L13: 0.2283 L23: -0.1764 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0627 S13: 0.0351 REMARK 3 S21: -0.0906 S22: 0.0230 S23: -0.1593 REMARK 3 S31: -0.0532 S32: 0.2631 S33: -0.0173 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.809 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4M9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)2SO4, 0.1M NAACT, 25% (W/V) REMARK 280 PEG 4000, 15MM AMP-PNP, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.26950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.47150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.90425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.47150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.63475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.47150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.90425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.47150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.63475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.26950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED THAT THE CHAIN A REMARK 300 AND ITS SYMMETRY RELATED MOLECULE BY THE OPERATOR Y,X,-Z FORM A REMARK 300 DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.53900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 252 REMARK 465 ASP A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 147 CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 160 CD CE NZ REMARK 470 GLN A 208 CD OE1 NE2 REMARK 470 VAL A 221 CG1 CG2 REMARK 470 LYS A 236 CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 LYS A 313 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 220 99.30 -160.64 REMARK 500 ASN A 258 -66.45 -91.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 O REMARK 620 2 VAL A 40 O 99.3 REMARK 620 3 HOH A 605 O 105.2 98.6 REMARK 620 4 HOH A 630 O 101.3 79.3 153.4 REMARK 620 5 HOH A 662 O 100.4 156.5 88.4 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 95 O REMARK 620 2 GLU A 101 OE2 92.9 REMARK 620 3 ILE A 260 O 122.1 88.9 REMARK 620 4 HOH A 607 O 89.1 88.2 148.7 REMARK 620 5 HOH A 666 O 85.5 175.2 95.8 87.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M9U RELATED DB: PDB REMARK 900 APO FORM REMARK 900 RELATED ID: 4MA0 RELATED DB: PDB REMARK 900 IN COMPLEX WITH HYDROLYSED ATP REMARK 900 RELATED ID: CSGID-IDP04645 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4MAM RELATED DB: PDB DBREF 4MA5 A 1 365 UNP Q5NGE8 Q5NGE8_FRATT 1 365 SEQRES 1 A 365 MSE LYS ILE GLY ILE ILE GLY ALA GLY GLN LEU ALA ARG SEQRES 2 A 365 MSE LEU SER LEU ALA GLY THR PRO LEU GLY LEU GLU PHE SEQRES 3 A 365 HIS CYS LEU GLY LYS ASN GLY ASP CYS ALA GLU GLU VAL SEQRES 4 A 365 VAL LYS THR VAL THR ASP ILE GLU LEU THR LYS VAL ASN SEQRES 5 A 365 ASP VAL VAL ALA TRP ALA LYS GLN PHE ASP VAL ILE THR SEQRES 6 A 365 PHE GLU ASN GLU ASN ILE SER HIS GLU LEU ILE LYS ALA SEQRES 7 A 365 ILE ASN HIS GLU VAL SER VAL TYR PRO SER ALA LYS ALA SEQRES 8 A 365 ILE ALA ILE SER GLN ASP ARG LEU LEU GLU LYS SER PHE SEQRES 9 A 365 MSE GLN ASP HIS GLY ILE ALA THR ALA LYS PHE VAL ASN SEQRES 10 A 365 ILE ASP SER LEU ALA LYS LEU GLN SER ALA VAL ASP ASP SEQRES 11 A 365 HIS GLY LEU PRO ALA ILE LEU LYS THR ARG ARG PHE GLY SEQRES 12 A 365 TYR ASP GLY LYS GLY GLN PHE VAL ILE ARG SER GLN GLU SEQRES 13 A 365 ASP ILE THR LYS ALA TRP ASP VAL LEU LYS ASP ALA PRO SEQRES 14 A 365 ASP GLY LEU ILE TYR GLU ALA PHE VAL ASP PHE ASP TYR SEQRES 15 A 365 GLU VAL SER GLN ILE CYS THR ALA ASP LEU LYS GLY ASN SEQRES 16 A 365 ILE ALA PHE TYR PRO LEU ALA ARG ASN THR HIS LYS GLN SEQRES 17 A 365 GLY ILE ILE VAL GLU SER GLU ALA PRO PHE GLU ASN VAL SEQRES 18 A 365 VAL LEU ALA GLU LYS ALA GLN GLN ILE ALA LYS ILE LEU SEQRES 19 A 365 VAL LYS GLU PHE ALA TYR VAL GLY THR LEU ALA ILE GLU SEQRES 20 A 365 PHE PHE VAL LYS GLY ASP GLU LEU ILE VAL ASN GLU ILE SEQRES 21 A 365 ALA PRO ARG VAL HIS ASN SER GLY HIS TRP SER ILE ASP SEQRES 22 A 365 GLY ALA VAL THR SER GLN PHE GLU ASN HIS VAL ARG ALA SEQRES 23 A 365 ILE ALA GLY LEU ILE LEU GLY ASP THR THR SER ARG LYS SEQRES 24 A 365 THR VAL MSE LEU ASN CYS ILE GLY GLY MSE PRO ALA THR SEQRES 25 A 365 LYS ASP LEU ALA ALA LEU ASP ARG VAL LYS ILE HIS SER SEQRES 26 A 365 TYR ASN LYS GLU PRO ARG LYS GLY ARG LYS VAL GLY HIS SEQRES 27 A 365 LEU ASN LEU ASN LEU ASN ASP GLU THR ASP GLU TYR GLN SEQRES 28 A 365 LEU LEU GLN VAL LYS LYS LEU ILE ALA LEU SER GLU GLU SEQRES 29 A 365 ILE MODRES 4MA5 MSE A 1 MET SELENOMETHIONINE MODRES 4MA5 MSE A 14 MET SELENOMETHIONINE MODRES 4MA5 MSE A 105 MET SELENOMETHIONINE MODRES 4MA5 MSE A 302 MET SELENOMETHIONINE MODRES 4MA5 MSE A 309 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 105 8 HET MSE A 302 8 HET MSE A 309 8 HET ANP A 401 31 HET FMT A 402 3 HET NA A 403 1 HET NA A 404 1 HET GOL A 405 6 HETNAM MSE SELENOMETHIONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 FMT C H2 O2 FORMUL 4 NA 2(NA 1+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *238(H2 O) HELIX 1 1 GLY A 9 THR A 20 1 12 HELIX 2 2 PRO A 21 GLY A 23 5 3 HELIX 3 3 ALA A 36 VAL A 40 5 5 HELIX 4 4 LYS A 50 LYS A 59 1 10 HELIX 5 5 SER A 72 HIS A 81 1 10 HELIX 6 6 SER A 88 GLN A 96 1 9 HELIX 7 7 ASP A 97 HIS A 108 1 12 HELIX 8 8 SER A 120 GLY A 132 1 13 HELIX 9 9 GLN A 155 LYS A 166 1 12 HELIX 10 10 ASN A 220 ALA A 239 1 20 HELIX 11 11 HIS A 265 HIS A 269 5 5 HELIX 12 12 TRP A 270 ALA A 275 1 6 HELIX 13 13 SER A 278 ALA A 288 1 11 HELIX 14 14 ALA A 311 ALA A 317 1 7 HELIX 15 15 ASP A 345 GLU A 363 1 19 SHEET 1 A 4 THR A 42 THR A 44 0 SHEET 2 A 4 GLU A 25 LEU A 29 1 N CYS A 28 O THR A 42 SHEET 3 A 4 LYS A 2 ILE A 6 1 N ILE A 3 O GLU A 25 SHEET 4 A 4 VAL A 63 PHE A 66 1 O VAL A 63 N GLY A 4 SHEET 1 B 4 PHE A 115 ILE A 118 0 SHEET 2 B 4 LEU A 172 ALA A 176 -1 O TYR A 174 N VAL A 116 SHEET 3 B 4 ALA A 135 THR A 139 -1 N LYS A 138 O ILE A 173 SHEET 4 B 4 GLN A 149 ILE A 152 -1 O PHE A 150 N LEU A 137 SHEET 1 C 4 ILE A 196 PHE A 198 0 SHEET 2 C 4 TYR A 182 ALA A 190 -1 N THR A 189 O ALA A 197 SHEET 3 C 4 GLY A 242 VAL A 250 -1 O PHE A 248 N VAL A 184 SHEET 4 C 4 ILE A 256 ALA A 261 -1 O ILE A 256 N PHE A 249 SHEET 1 D 7 ILE A 196 PHE A 198 0 SHEET 2 D 7 TYR A 182 ALA A 190 -1 N THR A 189 O ALA A 197 SHEET 3 D 7 ALA A 202 LYS A 207 -1 O ALA A 202 N SER A 185 SHEET 4 D 7 ILE A 210 ALA A 216 -1 O ILE A 210 N LYS A 207 SHEET 5 D 7 THR A 300 ILE A 306 -1 O THR A 300 N ALA A 216 SHEET 6 D 7 LYS A 335 ASN A 342 -1 O LEU A 339 N LEU A 303 SHEET 7 D 7 LYS A 322 SER A 325 -1 N LYS A 322 O ASN A 340 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ARG A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N LEU A 15 1555 1555 1.33 LINK C PHE A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N GLN A 106 1555 1555 1.33 LINK C VAL A 301 N MSE A 302 1555 1555 1.34 LINK C MSE A 302 N LEU A 303 1555 1555 1.33 LINK C GLY A 308 N MSE A 309 1555 1555 1.33 LINK C MSE A 309 N PRO A 310 1555 1555 1.34 LINK O GLU A 37 NA NA A 403 1555 1555 2.24 LINK O VAL A 40 NA NA A 403 1555 1555 2.30 LINK O SER A 95 NA NA A 404 1555 1555 2.61 LINK OE2 GLU A 101 NA NA A 404 1555 1555 2.31 LINK O ILE A 260 NA NA A 404 1555 1555 2.43 LINK NA NA A 403 O HOH A 605 1555 1555 2.26 LINK NA NA A 403 O HOH A 630 1555 1555 2.37 LINK NA NA A 403 O HOH A 662 1555 1555 2.42 LINK NA NA A 404 O HOH A 607 1555 1555 2.56 LINK NA NA A 404 O HOH A 666 1555 1555 2.39 CISPEP 1 TYR A 86 PRO A 87 0 -0.61 CISPEP 2 LEU A 133 PRO A 134 0 -1.34 CISPEP 3 ALA A 216 PRO A 217 0 -3.74 SITE 1 AC1 2 LEU A 121 GLN A 125 SITE 1 AC2 5 GLU A 37 VAL A 40 HOH A 605 HOH A 630 SITE 2 AC2 5 HOH A 662 SITE 1 AC3 6 SER A 95 GLU A 101 GLU A 259 ILE A 260 SITE 2 AC3 6 HOH A 607 HOH A 666 SITE 1 AC4 7 ILE A 272 ALA A 275 VAL A 276 THR A 277 SITE 2 AC4 7 SER A 278 GLU A 281 HOH A 546 CRYST1 84.943 84.943 106.539 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009386 0.00000