HEADER TRANSCRIPTION REGULATOR 06-AUG-12 4GGG TITLE CRYSTAL STRUCTURE OF V66A/L68V CZRA IN THE ZN(II)BOUND STATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPRESSOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: CZRA, SA1947; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-CZRA KEYWDS ZN(II) BINDING PROTEIN, TRANSCRIPTIONAL REGULATOR, ARSR/SMTB FAMILY KEYWDS 2 OF TRANSCRIPTIONAL REGULATORS, ZN(II) SENSING TRANSCRIPTIONAL KEYWDS 3 REGULATOR, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAMPANELLO,Z.MA,N.E.GROSSOEHME,D.K.CHAKROVORTY,A.J.GUERRA,Y.YE, AUTHOR 2 C.E.DANN III,K.M.MERZ JR.,D.P.GIEDROC REVDAT 4 13-SEP-23 4GGG 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4GGG 1 AUTHOR REVDAT 2 22-MAY-13 4GGG 1 JRNL REVDAT 1 06-FEB-13 4GGG 0 JRNL AUTH G.C.CAMPANELLO,Z.MA,N.E.GROSSOEHME,A.J.GUERRA,B.P.WARD, JRNL AUTH 2 R.D.DIMARCHI,Y.YE,C.E.DANN,D.P.GIEDROC JRNL TITL ALLOSTERIC INHIBITION OF A ZINC-SENSING TRANSCRIPTIONAL JRNL TITL 2 REPRESSOR: INSIGHTS INTO THE ARSENIC REPRESSOR (ARSR) JRNL TITL 3 FAMILY. JRNL REF J.MOL.BIOL. V. 425 1143 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23353829 JRNL DOI 10.1016/J.JMB.2013.01.018 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6714 - 4.3000 1.00 1381 142 0.1583 0.1917 REMARK 3 2 4.3000 - 3.4153 1.00 1284 142 0.1551 0.2122 REMARK 3 3 3.4153 - 2.9842 1.00 1270 146 0.1813 0.2222 REMARK 3 4 2.9842 - 2.7117 0.99 1253 138 0.1769 0.2245 REMARK 3 5 2.7117 - 2.5175 0.98 1225 136 0.1757 0.2214 REMARK 3 6 2.5175 - 2.3692 0.98 1236 132 0.1765 0.2361 REMARK 3 7 2.3692 - 2.2506 0.97 1212 139 0.1796 0.2540 REMARK 3 8 2.2506 - 2.1526 0.96 1188 136 0.1778 0.2811 REMARK 3 9 2.1526 - 2.0698 0.95 1175 134 0.2099 0.2597 REMARK 3 10 2.0698 - 1.9984 0.87 1069 113 0.2484 0.3053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 43.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.42940 REMARK 3 B22 (A**2) : -6.69040 REMARK 3 B33 (A**2) : 1.26100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1476 REMARK 3 ANGLE : 0.803 1985 REMARK 3 CHIRALITY : 0.057 236 REMARK 3 PLANARITY : 0.003 250 REMARK 3 DIHEDRAL : 13.997 542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 11:23) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4168 -5.2483 1.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.3316 T22: 0.2930 REMARK 3 T33: 0.2260 T12: -0.0135 REMARK 3 T13: -0.0478 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 6.0688 L22: 5.8758 REMARK 3 L33: 5.1489 L12: -5.9383 REMARK 3 L13: -4.1814 L23: 4.4021 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: 0.7762 S13: -0.9030 REMARK 3 S21: -0.2994 S22: -0.3086 S23: 0.7727 REMARK 3 S31: 0.6988 S32: -0.7632 S33: 0.3495 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 24:52) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7309 -3.7926 -16.3102 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.1710 REMARK 3 T33: 0.1307 T12: 0.0007 REMARK 3 T13: 0.0338 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 3.4550 L22: 7.6995 REMARK 3 L33: 7.9507 L12: -0.4570 REMARK 3 L13: 1.6046 L23: 1.1846 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: 0.1816 S13: 0.1176 REMARK 3 S21: -0.3271 S22: 0.0665 S23: -0.1394 REMARK 3 S31: -0.1642 S32: 0.3992 S33: -0.0281 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 53:65) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5823 -9.8673 -15.6269 REMARK 3 T TENSOR REMARK 3 T11: 0.2388 T22: 0.1939 REMARK 3 T33: 0.2533 T12: 0.0094 REMARK 3 T13: -0.0299 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 8.6837 L22: 7.4584 REMARK 3 L33: 4.6534 L12: -5.2880 REMARK 3 L13: -5.9121 L23: 5.2548 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.1106 S13: -0.4274 REMARK 3 S21: -0.1256 S22: -0.2576 S23: 0.9149 REMARK 3 S31: 0.3118 S32: -0.1983 S33: 0.3378 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 66:74) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5889 0.4744 -16.9186 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.2140 REMARK 3 T33: 0.1297 T12: 0.0431 REMARK 3 T13: -0.0060 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 5.9970 L22: 7.3199 REMARK 3 L33: 4.0461 L12: -0.3260 REMARK 3 L13: 4.6657 L23: -1.1503 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: 0.5332 S13: 0.0711 REMARK 3 S21: -0.1454 S22: 0.0486 S23: 0.1643 REMARK 3 S31: -0.9438 S32: -0.4986 S33: 0.1481 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 75:84) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3882 0.9988 -19.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.2327 REMARK 3 T33: 0.2187 T12: 0.0450 REMARK 3 T13: -0.0468 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.2213 L22: 5.2066 REMARK 3 L33: 6.0660 L12: 3.2945 REMARK 3 L13: 3.6303 L23: 5.5994 REMARK 3 S TENSOR REMARK 3 S11: 0.1948 S12: 0.3352 S13: 0.0265 REMARK 3 S21: -0.1078 S22: 0.2320 S23: 0.0095 REMARK 3 S31: -0.2379 S32: 0.3847 S33: -0.2842 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 85:102) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0089 4.9441 -1.0819 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1799 REMARK 3 T33: 0.0922 T12: -0.0279 REMARK 3 T13: 0.0600 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 9.2375 L22: 8.8965 REMARK 3 L33: 4.9547 L12: -3.2396 REMARK 3 L13: 2.9693 L23: -0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: 0.0585 S13: 0.0260 REMARK 3 S21: -0.0482 S22: -0.0430 S23: -0.4349 REMARK 3 S31: 0.2111 S32: 0.3714 S33: -0.1113 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 9:23) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0842 -23.4010 7.1908 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.2067 REMARK 3 T33: 0.2671 T12: -0.0438 REMARK 3 T13: -0.0130 T23: -0.0678 REMARK 3 L TENSOR REMARK 3 L11: 8.3237 L22: 7.9237 REMARK 3 L33: 1.9735 L12: -3.3500 REMARK 3 L13: 1.6577 L23: -3.2015 REMARK 3 S TENSOR REMARK 3 S11: -0.1475 S12: -0.3874 S13: 0.8299 REMARK 3 S21: 0.9481 S22: 0.1364 S23: -0.5257 REMARK 3 S31: -0.8563 S32: 0.0188 S33: 0.2227 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 24:52) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4883 -24.5113 -15.5733 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1341 REMARK 3 T33: 0.1098 T12: -0.0154 REMARK 3 T13: -0.0217 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 6.7777 L22: 6.8179 REMARK 3 L33: 7.7598 L12: 0.1877 REMARK 3 L13: -2.0252 L23: -2.2584 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.1557 S13: -0.1235 REMARK 3 S21: -0.2513 S22: -0.0063 S23: -0.0278 REMARK 3 S31: 0.1091 S32: -0.1196 S33: 0.0142 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 53:65) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4199 -18.4076 -10.0022 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.1687 REMARK 3 T33: 0.2031 T12: -0.0056 REMARK 3 T13: 0.0018 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 5.6069 L22: 6.9103 REMARK 3 L33: 3.7206 L12: 0.9559 REMARK 3 L13: -0.0102 L23: -5.0066 REMARK 3 S TENSOR REMARK 3 S11: -0.2481 S12: -0.3544 S13: 0.3330 REMARK 3 S21: 0.5529 S22: -0.1983 S23: -0.6968 REMARK 3 S31: -0.6072 S32: 0.2738 S33: 0.3979 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 66:74) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7313 -28.0721 -7.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.2853 REMARK 3 T33: 0.1519 T12: 0.0477 REMARK 3 T13: 0.0453 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.8230 L22: 4.5677 REMARK 3 L33: 7.5067 L12: 2.4251 REMARK 3 L13: -4.7959 L23: -1.9654 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.2498 S13: -0.3334 REMARK 3 S21: -0.5862 S22: -0.2697 S23: -0.5221 REMARK 3 S31: 0.3323 S32: 1.1238 S33: 0.2401 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 75:84) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0753 -28.2670 -11.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.2770 REMARK 3 T33: 0.3238 T12: 0.0391 REMARK 3 T13: 0.0738 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 5.2462 L22: 6.6875 REMARK 3 L33: 9.2489 L12: 5.7471 REMARK 3 L13: -6.5665 L23: -7.6019 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.2204 S13: 0.0901 REMARK 3 S21: 0.3752 S22: 0.0425 S23: -0.3365 REMARK 3 S31: -0.5255 S32: -0.1409 S33: -0.2609 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 85:101) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9004 -33.4103 -4.7968 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.1452 REMARK 3 T33: 0.1010 T12: 0.0208 REMARK 3 T13: 0.0310 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 3.7214 L22: 6.4761 REMARK 3 L33: 8.7156 L12: -3.9768 REMARK 3 L13: 5.0955 L23: -3.5470 REMARK 3 S TENSOR REMARK 3 S11: 0.5329 S12: 0.0208 S13: -0.1080 REMARK 3 S21: -0.4387 S22: -0.2294 S23: 0.0267 REMARK 3 S31: -0.0594 S32: -0.1852 S33: -0.2445 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.998 REMARK 200 RESOLUTION RANGE LOW (A) : 26.669 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1R1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, NACL, CHES, PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293 K, TEMPERATURE 293.K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 23.14300 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.93850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 23.14300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.93850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 340 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 ASN A 9 REMARK 465 THR A 10 REMARK 465 GLU A 103 REMARK 465 SER A 104 REMARK 465 GLY A 105 REMARK 465 LEU A 106 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 TYR B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 LYS B 102 REMARK 465 GLU B 103 REMARK 465 SER B 104 REMARK 465 GLY B 105 REMARK 465 LEU B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 74 78.96 -118.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HOH A 301 O 121.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 ND1 REMARK 620 2 HIS A 100 NE2 103.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 ND1 REMARK 620 2 HIS B 100 NE2 105.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METAL-SENSING TRANSCRIPTIONAL REPRESSOR REMARK 900 CZRA FROM STAPHYLOCOCCUS AUREUS IN THE ZN2-FORM REMARK 900 RELATED ID: 1R1U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METAL-SENSING TRANSCRIPTIONAL REPRESSOR REMARK 900 CZRA FROM STAPHYLOCOCCUS AUREUS IN THE APO-FORM REMARK 900 RELATED ID: 2KJB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CZRA IN THE DNA BOUND STATE REMARK 900 RELATED ID: 2KJC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CZRA IN THE ZN(II) STATE DBREF 4GGG A 2 106 UNP Q7A4C3 Q7A4C3_STAAN 2 106 DBREF 4GGG B 2 106 UNP Q7A4C3 Q7A4C3_STAAN 2 106 SEQADV 4GGG ALA A 2 UNP Q7A4C3 SER 2 CONFLICT SEQADV 4GGG ALA A 66 UNP Q7A4C3 VAL 66 ENGINEERED MUTATION SEQADV 4GGG VAL A 68 UNP Q7A4C3 LEU 68 ENGINEERED MUTATION SEQADV 4GGG ALA B 2 UNP Q7A4C3 SER 2 CONFLICT SEQADV 4GGG ALA B 66 UNP Q7A4C3 VAL 66 ENGINEERED MUTATION SEQADV 4GGG VAL B 68 UNP Q7A4C3 LEU 68 ENGINEERED MUTATION SEQRES 1 A 105 ALA GLU GLN TYR SER GLU ILE ASN THR ASP THR LEU GLU SEQRES 2 A 105 ARG VAL THR GLU ILE PHE LYS ALA LEU GLY ASP TYR ASN SEQRES 3 A 105 ARG ILE ARG ILE MET GLU LEU LEU SER VAL SER GLU ALA SEQRES 4 A 105 SER VAL GLY HIS ILE SER HIS GLN LEU ASN LEU SER GLN SEQRES 5 A 105 SER ASN VAL SER HIS GLN LEU LYS LEU LEU LYS SER ALA SEQRES 6 A 105 HIS VAL VAL LYS ALA LYS ARG GLN GLY GLN SER MET ILE SEQRES 7 A 105 TYR SER LEU ASP ASP ILE HIS VAL ALA THR MET LEU LYS SEQRES 8 A 105 GLN ALA ILE HIS HIS ALA ASN HIS PRO LYS GLU SER GLY SEQRES 9 A 105 LEU SEQRES 1 B 105 ALA GLU GLN TYR SER GLU ILE ASN THR ASP THR LEU GLU SEQRES 2 B 105 ARG VAL THR GLU ILE PHE LYS ALA LEU GLY ASP TYR ASN SEQRES 3 B 105 ARG ILE ARG ILE MET GLU LEU LEU SER VAL SER GLU ALA SEQRES 4 B 105 SER VAL GLY HIS ILE SER HIS GLN LEU ASN LEU SER GLN SEQRES 5 B 105 SER ASN VAL SER HIS GLN LEU LYS LEU LEU LYS SER ALA SEQRES 6 B 105 HIS VAL VAL LYS ALA LYS ARG GLN GLY GLN SER MET ILE SEQRES 7 B 105 TYR SER LEU ASP ASP ILE HIS VAL ALA THR MET LEU LYS SEQRES 8 B 105 GLN ALA ILE HIS HIS ALA ASN HIS PRO LYS GLU SER GLY SEQRES 9 B 105 LEU HET ZN A 201 1 HET ZN A 202 1 HET CL A 203 1 HET ZN B 201 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 3(ZN 2+) FORMUL 5 CL CL 1- FORMUL 7 HOH *113(H2 O) HELIX 1 1 ASP A 11 GLY A 24 1 14 HELIX 2 2 ASP A 25 SER A 38 1 14 HELIX 3 3 SER A 41 ASN A 50 1 10 HELIX 4 4 SER A 52 ALA A 66 1 15 HELIX 5 5 ASP A 84 HIS A 100 1 17 HELIX 6 6 THR B 10 GLY B 24 1 15 HELIX 7 7 ASP B 25 SER B 36 1 12 HELIX 8 8 VAL B 42 ASN B 50 1 9 HELIX 9 9 SER B 52 ALA B 66 1 15 HELIX 10 10 ASP B 84 HIS B 100 1 17 SHEET 1 A 2 VAL A 69 GLN A 74 0 SHEET 2 A 2 SER A 77 LEU A 82 -1 O ILE A 79 N LYS A 72 SHEET 1 B 3 ALA B 40 SER B 41 0 SHEET 2 B 3 SER B 77 LEU B 82 -1 O TYR B 80 N ALA B 40 SHEET 3 B 3 VAL B 69 GLN B 74 -1 N GLN B 74 O SER B 77 LINK NE2 HIS A 86 ZN ZN A 202 1555 1555 2.02 LINK ND1 HIS A 97 ZN ZN A 201 1555 1555 2.02 LINK NE2 HIS A 100 ZN ZN A 201 1555 1555 2.05 LINK ZN ZN A 202 O HOH A 301 1555 1555 2.14 LINK ND1 HIS B 97 ZN ZN B 201 1555 1555 2.08 LINK NE2 HIS B 100 ZN ZN B 201 1555 1555 2.03 SITE 1 AC1 4 ASP A 84 HIS A 86 HIS A 97 HIS A 100 SITE 1 AC2 5 HIS A 86 HIS A 96 HOH A 301 HIS B 86 SITE 2 AC2 5 HIS B 96 SITE 1 AC3 6 LEU A 51 SER A 52 ASN A 55 LEU B 51 SITE 2 AC3 6 SER B 52 ASN B 55 SITE 1 AC4 4 ASP B 84 HIS B 86 HIS B 97 HIS B 100 CRYST1 46.286 50.198 85.877 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011645 0.00000