HEADER TRANSFERASE 09-OCT-13 4CAW TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TITLE 2 TRANSFERASE IN COMPLEX WITH MYRISTOYL COA AND A PYRAZOLE TITLE 3 SULPHONAMIDE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 86-492; COMPND 5 SYNONYM: MYRISTOYL-COA\:PROTEIN N-MYRISTOYLTRANSFERASE, NMT, COMPND 6 PEPTIDE N-MYRISTOYLTRANSFERASE; COMPND 7 EC: 2.3.1.97; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P1 KEYWDS TRANSFERASE, DRUG DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,W.FANG,O.G.RAIMI,D.E.BLAIR,J.HARRISON,G.F.RUDA, AUTHOR 2 D.E.A.LOCKHART,L.S.TORRIE,P.G.WYATT,I.H.GILBERT,D.M.F.VAN AALTEN REVDAT 2 23-MAR-16 4CAW 1 JRNL REVDAT 1 17-SEP-14 4CAW 0 JRNL AUTH W.FANG,D.A.ROBINSON,O.G.RAIMI,D.E.BLAIR,J.R.HARRISON, JRNL AUTH 2 D.E.A.LOCKHART,L.S.TORRIE,G.F.RUDA,P.G.WYATT,I.H.GILBERT, JRNL AUTH 3 D.M.F.VAN AALTEN JRNL TITL N-MYRISTOYLTRANSFERASE IS A CELL WALL TARGET IN ASPERGILLUS JRNL TITL 2 FUMIGATUS. JRNL REF ACS CHEM.BIOL. V. 10 1425 2015 JRNL REFN ISSN 1554-8929 JRNL PMID 25706802 JRNL DOI 10.1021/CB5008647 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.5 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 12492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDON REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.1 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.5 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.565 REMARK 3 REFLECTION IN BIN (WORKING SET) : 950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.7 REMARK 3 BIN R VALUE (WORKING SET) : 0.316 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.45 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58 REMARK 3 B22 (A**2) : 0.46 REMARK 3 B33 (A**2) : 1.12 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.419 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.7 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3359 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4573 ; 1.234 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 4.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;34.239 ;23.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;14.688 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.667 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2513 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 0.160 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3166 ; 0.295 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 0.306 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1405 ; 0.530 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 492 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6230 3.2338 -18.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: 0.0474 REMARK 3 T33: 0.0350 T12: 0.0026 REMARK 3 T13: 0.0052 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.1289 L22: 0.8672 REMARK 3 L33: 0.6816 L12: -0.0826 REMARK 3 L13: 0.2249 L23: -0.2522 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.1218 S13: -0.0550 REMARK 3 S21: 0.0899 S22: 0.0069 S23: -0.0632 REMARK 3 S31: 0.0139 S32: 0.1050 S33: -0.0065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.4 REMARK 3 ION PROBE RADIUS : 0.8 REMARK 3 SHRINKAGE RADIUS : 0.8 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4CAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-13. REMARK 100 THE PDBE ID CODE IS EBI-58682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 53.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.7 REMARK 200 R MERGE FOR SHELL (I) : 0.31 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.43650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.75700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.75700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.43650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 ARG A 84 REMARK 465 SER A 85 REMARK 465 GLN A 86 REMARK 465 THR A 87 REMARK 465 GLN A 88 REMARK 465 PRO A 89 REMARK 465 VAL A 90 REMARK 465 PRO A 91 REMARK 465 ARG A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 THR A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 ASP A 99 REMARK 465 THR A 100 REMARK 465 ASN A 405 REMARK 465 ASN A 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 382 CG CD OE1 NE2 REMARK 470 ASN A 383 CG OD1 ND2 REMARK 470 PRO A 384 CG CD REMARK 470 LYS A 385 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 384 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 153 112.39 -11.32 REMARK 500 MET A 154 -81.62 78.83 REMARK 500 ARG A 158 72.38 -118.39 REMARK 500 ASN A 204 -16.09 70.50 REMARK 500 SER A 223 88.34 49.80 REMARK 500 LYS A 224 -45.47 82.04 REMARK 500 THR A 256 81.94 39.79 REMARK 500 LEU A 281 78.56 -118.77 REMARK 500 ALA A 283 -51.30 -129.56 REMARK 500 PRO A 346 38.56 -77.40 REMARK 500 GLU A 347 -60.20 -97.45 REMARK 500 THR A 348 -86.61 96.46 REMARK 500 GLU A 360 50.68 79.03 REMARK 500 ASN A 383 -77.48 -57.78 REMARK 500 PRO A 384 -80.26 60.99 REMARK 500 TYR A 395 -125.35 -99.06 REMARK 500 PHE A 403 46.56 -81.29 REMARK 500 LYS A 408 78.12 -106.55 REMARK 500 HIS A 439 -145.48 51.57 REMARK 500 ASP A 440 30.53 -97.71 REMARK 500 PRO A 442 0.15 -60.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 MET A 154 24.9 L L OUTSIDE RANGE REMARK 500 LYS A 224 21.8 L L OUTSIDE RANGE REMARK 500 GLU A 347 24.5 L L OUTSIDE RANGE REMARK 500 THR A 348 23.9 L L OUTSIDE RANGE REMARK 500 THR A 364 23.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND ARE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): THESE HAVE BEEN REPOSITIONED REMARK 525 BY APPLYING THE SYMMETRY TRANSFORMATION INDICATED. REMARK 525 REMARK 525 M RES CSSEQI ORIGINAL COORDINATES SYMMETRY TRANS. DIST. REMARK 525 X Y Z REMARK 525 HOH D 49 9.332 6.128 -32.320 003 554 3.04 REMARK 525 HOH D 69 18.056 5.174 -33.880 003 554 2.93 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3U A1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYA A1494 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CAV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL REMARK 900 TRANSFERASE IN COMPLEX WITH MYRISTOYL COA AND A REMARK 900 BENZOFURAN LIGAND R0-09-4879 REMARK 900 RELATED ID: 4CAX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL REMARK 900 TRANSFERASE IN COMPLEX WITH MYRISTOYL COA AND A REMARK 900 PYRAZOLE SULPHONAMIDE LIGAND (DDD85646) DBREF 4CAW A 86 492 UNP Q9UVX3 NMT_ASPFU 86 492 SEQADV 4CAW GLY A 82 UNP Q9UVX3 EXPRESSION TAG SEQADV 4CAW PRO A 83 UNP Q9UVX3 EXPRESSION TAG SEQADV 4CAW ARG A 84 UNP Q9UVX3 EXPRESSION TAG SEQADV 4CAW SER A 85 UNP Q9UVX3 EXPRESSION TAG SEQRES 1 A 411 GLY PRO ARG SER GLN THR GLN PRO VAL PRO ARG PHE ASP SEQRES 2 A 411 GLU THR SER THR ASP THR GLY GLY PRO ILE LYS ILE ILE SEQRES 3 A 411 ASP PRO GLU LYS VAL SER LYS GLU PRO ASP ALA LEU LEU SEQRES 4 A 411 GLU GLY PHE GLU TRP ALA THR LEU ASP LEU THR ASN GLU SEQRES 5 A 411 THR GLU LEU GLN GLU LEU TRP ASP LEU LEU THR TYR HIS SEQRES 6 A 411 TYR VAL GLU ASP ASP ASN ALA MET PHE ARG PHE ARG TYR SEQRES 7 A 411 SER GLN SER PHE LEU HIS TRP ALA LEU MET SER PRO GLY SEQRES 8 A 411 TRP LYS LYS GLU TRP HIS VAL GLY VAL ARG ALA THR LYS SEQRES 9 A 411 SER ARG LYS LEU VAL ALA SER ILE CYS GLY VAL PRO THR SEQRES 10 A 411 GLU ILE ASN VAL ARG ASN GLN LYS LEU LYS VAL VAL GLU SEQRES 11 A 411 ILE ASN PHE LEU CYS ILE HIS LYS LYS LEU ARG SER LYS SEQRES 12 A 411 ARG LEU THR PRO VAL LEU ILE LYS GLU ILE THR ARG ARG SEQRES 13 A 411 CYS TYR LEU ASN GLY ILE TYR GLN ALA ILE TYR THR ALA SEQRES 14 A 411 GLY VAL VAL LEU PRO THR PRO VAL SER SER CYS ARG TYR SEQRES 15 A 411 TYR HIS ARG PRO LEU ASP TRP LEU LYS LEU TYR GLU VAL SEQRES 16 A 411 GLY PHE SER PRO LEU PRO ALA GLY SER THR LYS ALA ARG SEQRES 17 A 411 GLN ILE THR LYS ASN HIS LEU PRO SER THR THR SER THR SEQRES 18 A 411 PRO GLY LEU ARG PRO MET GLU PRO LYS ASP ILE ASP THR SEQRES 19 A 411 VAL HIS ASP LEU LEU GLN ARG TYR LEU SER ARG PHE ALA SEQRES 20 A 411 LEU ASN GLN ALA PHE THR ARG GLU GLU VAL ASP HIS TRP SEQRES 21 A 411 LEU VAL HIS LYS PRO GLU THR VAL LYS GLU GLN VAL VAL SEQRES 22 A 411 TRP ALA TYR VAL VAL GLU ASP PRO GLU THR HIS LYS ILE SEQRES 23 A 411 THR ASP PHE PHE SER PHE TYR ASN LEU GLU SER THR VAL SEQRES 24 A 411 ILE GLN ASN PRO LYS HIS ASP ASN VAL ARG ALA ALA TYR SEQRES 25 A 411 LEU TYR TYR TYR ALA THR GLU THR ALA PHE THR ASN ASN SEQRES 26 A 411 MET LYS ALA LEU LYS GLU ARG LEU LEU MET LEU MET ASN SEQRES 27 A 411 ASP ALA LEU ILE LEU ALA LYS LYS ALA HIS PHE ASP VAL SEQRES 28 A 411 PHE ASN ALA LEU THR LEU HIS ASP ASN PRO LEU PHE LEU SEQRES 29 A 411 GLU GLN LEU LYS PHE GLY ALA GLY ASP GLY GLN LEU HIS SEQRES 30 A 411 PHE TYR LEU TYR ASN TYR ARG THR ALA PRO VAL PRO GLY SEQRES 31 A 411 GLY VAL ASN GLU LYS ASN LEU PRO ASP GLU LYS ARG MET SEQRES 32 A 411 GLY GLY VAL GLY ILE VAL MET LEU HET P3U A1493 35 HET MYA A1494 63 HETNAM MYA TETRADECANOYL-COA HETNAM P3U 2,6-DICHLORO-4-(2-PIPERAZIN-1-YLPYRIDIN-4-YL) HETNAM 2 P3U -N-(1,5-DIMETHYL,3-ISOBUTYL-1H-PYRAZOL-4-YL) HETNAM 3 P3U BENZENESULFONAMIDE HETSYN MYA MYRISTOYL-COA FORMUL 2 MYA C35 H62 N7 O17 P3 S FORMUL 3 P3U C24 H30 CL2 N6 O2 S FORMUL 4 HOH *93(H2 O) HELIX 1 1 ASP A 108 VAL A 112 5 5 HELIX 2 2 ASN A 132 TYR A 147 1 16 HELIX 3 3 SER A 160 MET A 169 1 10 HELIX 4 4 LYS A 174 GLU A 176 5 3 HELIX 5 5 LYS A 219 ARG A 222 5 4 HELIX 6 6 LEU A 226 LEU A 240 1 15 HELIX 7 7 ASP A 269 VAL A 276 1 8 HELIX 8 8 THR A 286 ASN A 294 1 9 HELIX 9 9 GLU A 309 LYS A 311 5 3 HELIX 10 10 ASP A 312 SER A 325 1 14 HELIX 11 11 THR A 334 VAL A 343 1 10 HELIX 12 12 THR A 401 PHE A 403 5 3 HELIX 13 13 LYS A 408 ALA A 428 1 21 HELIX 14 14 ASP A 440 PHE A 444 5 5 HELIX 15 15 ASP A 480 MET A 484 5 5 SHEET 1 AA 5 PHE A 123 THR A 127 0 SHEET 2 AA 5 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AA 5 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AA 5 LEU A 329 GLN A 331 -1 O ASN A 330 N ASN A 201 SHEET 5 AA 5 VAL A 487 GLY A 488 -1 O GLY A 488 N GLN A 331 SHEET 1 AB12 PHE A 123 THR A 127 0 SHEET 2 AB12 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AB12 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AB12 GLN A 205 ILE A 217 -1 O GLN A 205 N VAL A 202 SHEET 5 AB12 ALA A 246 ALA A 250 1 O ILE A 247 N ILE A 212 SHEET 6 AB12 GLY A 451 TYR A 462 -1 O HIS A 458 N ALA A 250 SHEET 7 AB12 SER A 259 PRO A 267 -1 O SER A 259 N PHE A 459 SHEET 8 AB12 VAL A 432 LEU A 436 -1 O PHE A 433 N ARG A 266 SHEET 9 AB12 ASN A 388 THR A 399 1 O ALA A 392 N ASN A 434 SHEET 10 AB12 ILE A 367 VAL A 380 -1 O PHE A 370 N ALA A 398 SHEET 11 AB12 VAL A 354 GLU A 360 -1 O TRP A 355 N PHE A 373 SHEET 12 AB12 ARG A 306 PRO A 307 -1 O ARG A 306 N VAL A 358 SHEET 1 AC11 PHE A 123 THR A 127 0 SHEET 2 AC11 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AC11 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AC11 GLN A 205 ILE A 217 -1 O GLN A 205 N VAL A 202 SHEET 5 AC11 ALA A 246 ALA A 250 1 O ILE A 247 N ILE A 212 SHEET 6 AC11 GLY A 451 TYR A 462 -1 O HIS A 458 N ALA A 250 SHEET 7 AC11 SER A 259 PRO A 267 -1 O SER A 259 N PHE A 459 SHEET 8 AC11 VAL A 432 LEU A 436 -1 O PHE A 433 N ARG A 266 SHEET 9 AC11 ASN A 388 THR A 399 1 O ALA A 392 N ASN A 434 SHEET 10 AC11 ILE A 367 VAL A 380 -1 O PHE A 370 N ALA A 398 SHEET 11 AC11 PHE A 155 ARG A 158 -1 O ARG A 156 N THR A 379 CISPEP 1 ALA A 153 MET A 154 0 -1.31 CISPEP 2 SER A 223 LYS A 224 0 -16.49 CISPEP 3 PRO A 282 ALA A 283 0 -3.70 CISPEP 4 GLU A 347 THR A 348 0 11.13 CISPEP 5 VAL A 359 GLU A 360 0 12.65 CISPEP 6 THR A 364 HIS A 365 0 1.76 CISPEP 7 MET A 407 LYS A 408 0 2.08 SITE 1 AC1 16 ASP A 150 PHE A 155 PHE A 157 THR A 249 SITE 2 AC1 16 GLY A 251 TYR A 263 HIS A 265 PHE A 278 SITE 3 AC1 16 SER A 378 TYR A 393 GLY A 455 LEU A 457 SITE 4 AC1 16 LEU A 492 HOH A2021 HOH A2053 HOH A2093 SITE 1 AC2 23 TYR A 147 VAL A 148 ILE A 212 ASN A 213 SITE 2 AC2 23 PHE A 214 LEU A 215 ILE A 217 ARG A 222 SITE 3 AC2 23 SER A 223 ARG A 225 LEU A 226 THR A 227 SITE 4 AC2 23 THR A 235 ILE A 243 TYR A 244 GLN A 245 SITE 5 AC2 23 TYR A 248 THR A 249 VAL A 252 LEU A 254 SITE 6 AC2 23 ARG A 289 TYR A 462 HOH A2050 CRYST1 50.873 57.830 147.514 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006779 0.00000