HEADER RNA BINDING PROTEIN 12-OCT-11 4A4H TITLE SOLUTION STRUCTURE OF SPF30 TUDOR DOMAIN IN COMPLEX WITH TITLE 2 ASYMMETRICALLY DIMETHYLATED ARGININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN, RESIDUES 65-128; COMPND 5 SYNONYM: SPF30, KDA SPLICING FACTOR SMNRP, SMN-RELATED PROTEIN, COMPND 6 SURVIVAL MOTOR NEURON DOMAIN-CONTAINING PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TRIPSIANES,T.MADL,M.MACHYNA,D.FESSAS,C.ENGLBRECHT,U.FISCHER, AUTHOR 2 K.M.NEUGEBAUER,M.SATTLER REVDAT 5 15-NOV-23 4A4H 1 REMARK ATOM REVDAT 4 06-NOV-13 4A4H 1 REMARK HETATM REVDAT 3 28-DEC-11 4A4H 1 ATOM REVDAT 2 14-DEC-11 4A4H 1 JRNL REVDAT 1 30-NOV-11 4A4H 0 JRNL AUTH K.TRIPSIANES,T.MADL,M.MACHYNA,D.FESSAS,C.ENGLBRECHT, JRNL AUTH 2 U.FISCHER,K.M.NEUGEBAUER,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR DIMETHYL-ARGININE RECOGNITION BY THE JRNL TITL 2 TUDOR DOMAINS OF HUMAN SMN AND SPF30 PROTEINS JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1414 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22101937 JRNL DOI 10.1038/NSMB.2185 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SET OF NOE DISTANCE RESTRAINTS REMARK 3 DERIVED FROM CYANA, TOGETHER WITH PHI AND PSI BACKBONE DIHEDRAL REMARK 3 ANGLE RESTRAINTS DERIVED FROM TALOS BASED ON THE CHEMICAL SHIFTS REMARK 3 WERE USED FOR WATER REFINEMENT USING CNS REMARK 4 REMARK 4 4A4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049976. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 298.0; 298.0; REMARK 210 298.0; 298.0 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50; 50; 50; 50; 50; 50 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM; 1.0 REMARK 210 ATM; 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 93% WATER/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED 3D NOESY; F1 15N/13C REMARK 210 FILTERED; 15N- EDITED 3D NOESY; REMARK 210 13C- EDITED 3D NOESY (ALIPHATICS) REMARK 210 ; 13C-EDITED 3D NOESY REMARK 210 (ALIPHATICS); 13C- EDITED 3D REMARK 210 NOESY (AROMATICS); 13C-EDITED 3D REMARK 210 NOESY (AROMATICS) REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, CYANA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 66 -74.82 -137.84 REMARK 500 4 GLU A 127 59.74 -92.06 REMARK 500 6 GLU A 127 30.40 72.60 REMARK 500 8 THR A 67 -179.05 -175.42 REMARK 500 9 SER A 66 84.96 61.38 REMARK 500 9 PRO A 69 153.22 -48.50 REMARK 500 9 VAL A 125 94.10 -67.74 REMARK 500 14 GLU A 126 94.26 -67.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DA2 A 1129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A4G RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH REMARK 900 ASYMMETRICALLY DIMETHYLATED ARGININE REMARK 900 RELATED ID: 4A4F RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SPF30 TUDOR DOMAIN IN COMPLEX WITH REMARK 900 SYMMETRICALLY DIMETHYLATED ARGININE REMARK 900 RELATED ID: 4A4E RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF SMN TUDOR DOMAIN IN COMPLEX WITH REMARK 900 SYMMETRICALLY DIMETHYLATED ARGININE REMARK 900 RELATED ID: 18008 RELATED DB: BMRB DBREF 4A4H A 65 128 UNP O75940 SPF30_HUMAN 65 128 SEQRES 1 A 64 ALA SER THR GLN PRO THR HIS SER TRP LYS VAL GLY ASP SEQRES 2 A 64 LYS CYS MET ALA VAL TRP SER GLU ASP GLY GLN CYS TYR SEQRES 3 A 64 GLU ALA GLU ILE GLU GLU ILE ASP GLU GLU ASN GLY THR SEQRES 4 A 64 ALA ALA ILE THR PHE ALA GLY TYR GLY ASN ALA GLU VAL SEQRES 5 A 64 THR PRO LEU LEU ASN LEU LYS PRO VAL GLU GLU GLY HET DA2 A1129 33 HETNAM DA2 NG,NG-DIMETHYL-L-ARGININE HETSYN DA2 ADMA FORMUL 2 DA2 C8 H18 N4 O2 HELIX 1 1 LEU A 120 LEU A 122 5 3 SHEET 1 AA 5 ALA A 114 PRO A 118 0 SHEET 2 AA 5 THR A 103 PHE A 108 -1 O ALA A 104 N THR A 117 SHEET 3 AA 5 CYS A 89 ASP A 98 -1 O GLU A 93 N THR A 107 SHEET 4 AA 5 LYS A 78 VAL A 82 -1 O CYS A 79 N ALA A 92 SHEET 5 AA 5 LYS A 123 PRO A 124 -1 O LYS A 123 N MET A 80 SITE 1 AC1 5 TRP A 83 TYR A 90 PHE A 108 TYR A 111 SITE 2 AC1 5 ASN A 113 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20