HEADER PROTEIN BINDING 08-JUN-12 3VTX TITLE CRYSTAL STRUCTURE OF MAMA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAMA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS MAGNETOBACTERIUM BAVARICUM; SOURCE 3 ORGANISM_TAXID: 29290; SOURCE 4 STRAIN: MBAV; SOURCE 5 GENE: MAMA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B KEYWDS TETRATRICOPEPTIDE REPEATS (TPR) CONTAINING PROTEIN, PEPTIDE BINDING KEYWDS 2 PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.ZEYTUNI,D.BARAN,G.DAVIDOV,R.ZARIVACH REVDAT 4 20-MAR-24 3VTX 1 REMARK REVDAT 3 22-NOV-17 3VTX 1 REMARK REVDAT 2 14-AUG-13 3VTX 1 JRNL REVDAT 1 31-OCT-12 3VTX 0 JRNL AUTH N.ZEYTUNI,D.BARAN,G.DAVIDOV,R.ZARIVACH JRNL TITL INTER-PHYLUM STRUCTURAL CONSERVATION OF THE JRNL TITL 2 MAGNETOSOME-ASSOCIATED TPR-CONTAINING PROTEIN, MAMA JRNL REF J.STRUCT.BIOL. V. 180 479 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22917855 JRNL DOI 10.1016/J.JSB.2012.08.001 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 47254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3006 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2097 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4054 ; 2.024 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5169 ; 1.146 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 5.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;37.973 ;25.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;14.482 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.086 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3295 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1838 ; 1.369 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 755 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2952 ; 2.344 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1168 ; 3.622 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1090 ; 5.751 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9885 31.6247 -0.1848 REMARK 3 T TENSOR REMARK 3 T11: 0.0629 T22: 0.0322 REMARK 3 T33: 0.0868 T12: -0.0061 REMARK 3 T13: 0.0106 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.4402 L22: 0.2284 REMARK 3 L33: 0.2474 L12: -0.2505 REMARK 3 L13: -0.1663 L23: 0.0398 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: -0.0220 S13: -0.0902 REMARK 3 S21: 0.0456 S22: 0.0540 S23: 0.1042 REMARK 3 S31: 0.0761 S32: 0.0107 S33: 0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 222 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7243 65.6296 -9.3469 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.0649 REMARK 3 T33: 0.0586 T12: -0.0048 REMARK 3 T13: 0.0072 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.1496 L22: 0.3504 REMARK 3 L33: 0.3218 L12: -0.1433 REMARK 3 L13: 0.0206 L23: -0.2495 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0239 S13: -0.0172 REMARK 3 S21: 0.0434 S22: 0.0813 S23: -0.0001 REMARK 3 S31: -0.0488 S32: -0.0544 S33: -0.0402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3VTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000095495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.745 REMARK 200 RESOLUTION RANGE LOW (A) : 54.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 9, 2M MGCL, VAPPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 4.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.72850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.98150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.77400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.98150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.72850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.77400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.45700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -38.77400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -38.98150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 40 REMARK 465 GLY A 41 REMARK 465 GLU A 42 REMARK 465 ARG B 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 450 O HOH B 565 1.94 REMARK 500 OE2 GLU B 211 O HOH B 443 2.00 REMARK 500 O HOH B 613 O HOH B 614 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 527 O HOH B 611 2574 1.94 REMARK 500 O HOH A 430 O HOH B 446 3644 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 191 CD GLU A 191 OE2 0.075 REMARK 500 GLU B 198 CD GLU B 198 OE2 -0.073 REMARK 500 TYR B 202 CZ TYR B 202 CE2 -0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 52 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 137 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 196 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 93 68.44 -118.79 REMARK 500 LEU A 195 77.75 -108.17 REMARK 500 LEU B 93 72.88 -119.59 REMARK 500 LEU B 195 79.71 -112.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VTY RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE OF THE THE SEQUENCE OF THIS PROTEIN WAS NOT REMARK 999 AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE REMARK 999 TIME OF DEPOSITION. RESIDUES 42 TO END OF THE ENTIRE PROTEIN WAS REMARK 999 CLONED, N-TERMINAL RESIDUES MG (40-41) AND C-TERMINAL RESIDUES REMARK 999 ELALVPR (217-223) WERE FROM EXPRESSION TAG. DBREF 3VTX A 40 223 PDB 3VTX 3VTX 40 223 DBREF 3VTX B 40 223 PDB 3VTX 3VTX 40 223 SEQRES 1 A 184 MET GLY GLU THR THR THR ILE TYR MET ASP ILE GLY ASP SEQRES 2 A 184 LYS LYS ARG THR LYS GLY ASP PHE ASP GLY ALA ILE ARG SEQRES 3 A 184 ALA TYR LYS LYS VAL LEU LYS ALA ASP PRO ASN ASN VAL SEQRES 4 A 184 GLU THR LEU LEU LYS LEU GLY LYS THR TYR MET ASP ILE SEQRES 5 A 184 GLY LEU PRO ASN ASP ALA ILE GLU SER LEU LYS LYS PHE SEQRES 6 A 184 VAL VAL LEU ASP THR THR SER ALA GLU ALA TYR TYR ILE SEQRES 7 A 184 LEU GLY SER ALA ASN PHE MET ILE ASP GLU LYS GLN ALA SEQRES 8 A 184 ALA ILE ASP ALA LEU GLN ARG ALA ILE ALA LEU ASN THR SEQRES 9 A 184 VAL TYR ALA ASP ALA TYR TYR LYS LEU GLY LEU VAL TYR SEQRES 10 A 184 ASP SER MET GLY GLU HIS ASP LYS ALA ILE GLU ALA TYR SEQRES 11 A 184 GLU LYS THR ILE SER ILE LYS PRO GLY PHE ILE ARG ALA SEQRES 12 A 184 TYR GLN SER ILE GLY LEU ALA TYR GLU GLY LYS GLY LEU SEQRES 13 A 184 ARG ASP GLU ALA VAL LYS TYR PHE LYS LYS ALA LEU GLU SEQRES 14 A 184 LYS GLU GLU LYS LYS ALA LYS TYR GLU LEU ALA LEU VAL SEQRES 15 A 184 PRO ARG SEQRES 1 B 184 MET GLY GLU THR THR THR ILE TYR MET ASP ILE GLY ASP SEQRES 2 B 184 LYS LYS ARG THR LYS GLY ASP PHE ASP GLY ALA ILE ARG SEQRES 3 B 184 ALA TYR LYS LYS VAL LEU LYS ALA ASP PRO ASN ASN VAL SEQRES 4 B 184 GLU THR LEU LEU LYS LEU GLY LYS THR TYR MET ASP ILE SEQRES 5 B 184 GLY LEU PRO ASN ASP ALA ILE GLU SER LEU LYS LYS PHE SEQRES 6 B 184 VAL VAL LEU ASP THR THR SER ALA GLU ALA TYR TYR ILE SEQRES 7 B 184 LEU GLY SER ALA ASN PHE MET ILE ASP GLU LYS GLN ALA SEQRES 8 B 184 ALA ILE ASP ALA LEU GLN ARG ALA ILE ALA LEU ASN THR SEQRES 9 B 184 VAL TYR ALA ASP ALA TYR TYR LYS LEU GLY LEU VAL TYR SEQRES 10 B 184 ASP SER MET GLY GLU HIS ASP LYS ALA ILE GLU ALA TYR SEQRES 11 B 184 GLU LYS THR ILE SER ILE LYS PRO GLY PHE ILE ARG ALA SEQRES 12 B 184 TYR GLN SER ILE GLY LEU ALA TYR GLU GLY LYS GLY LEU SEQRES 13 B 184 ARG ASP GLU ALA VAL LYS TYR PHE LYS LYS ALA LEU GLU SEQRES 14 B 184 LYS GLU GLU LYS LYS ALA LYS TYR GLU LEU ALA LEU VAL SEQRES 15 B 184 PRO ARG HET GOL A 301 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *376(H2 O) HELIX 1 1 THR A 43 GLY A 58 1 16 HELIX 2 2 ASP A 59 ASP A 74 1 16 HELIX 3 3 ASN A 77 ILE A 91 1 15 HELIX 4 4 LEU A 93 ASP A 108 1 16 HELIX 5 5 SER A 111 ILE A 125 1 15 HELIX 6 6 GLU A 127 ASN A 142 1 16 HELIX 7 7 TYR A 145 MET A 159 1 15 HELIX 8 8 GLU A 161 LYS A 176 1 16 HELIX 9 9 PHE A 179 LYS A 193 1 15 HELIX 10 10 LEU A 195 LYS A 209 1 15 HELIX 11 11 GLU A 210 GLU A 217 1 8 HELIX 12 12 GLU B 42 GLY B 58 1 17 HELIX 13 13 ASP B 59 ASP B 74 1 16 HELIX 14 14 ASN B 77 ILE B 91 1 15 HELIX 15 15 LEU B 93 ASP B 108 1 16 HELIX 16 16 SER B 111 ILE B 125 1 15 HELIX 17 17 GLU B 127 ASN B 142 1 16 HELIX 18 18 TYR B 145 MET B 159 1 15 HELIX 19 19 GLU B 161 LYS B 176 1 16 HELIX 20 20 PHE B 179 LYS B 193 1 15 HELIX 21 21 LEU B 195 GLU B 217 1 23 SITE 1 AC1 7 HIS A 162 GLY A 192 HOH A 523 HOH A 524 SITE 2 AC1 7 THR B 143 LYS B 171 HOH B 436 SITE 1 AC2 4 ALA B 140 LEU B 207 GLU B 211 HOH B 433 CRYST1 77.457 77.548 77.963 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012827 0.00000