HEADER DNA/METAL BINDING PROTEIN 08-NOV-11 3UK3 TITLE CRYSTAL STRUCTURE OF ZNF217 BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP COMPND 3 *CP*A)-3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP COMPND 8 *CP*A)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ZINC FINGER PROTEIN 217; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: ZINC FINGERS 6 AND 7 (UNP RESIDUES 469-523); COMPND 15 SYNONYM: TRANSCRIPTION FACTOR ZNF217; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: ZNF217, ZABC1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS ZINC FINGER, TRANSCRIPTION FACTOR, DNA BINDING, DNA-METAL BINDING KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.S.VANDEVENNE,D.A.JACQUES,J.M.GUSS,J.P.MACKAY REVDAT 2 20-MAR-24 3UK3 1 REMARK SEQADV LINK REVDAT 1 05-DEC-12 3UK3 0 JRNL AUTH M.S.VANDEVENNE,D.A.JACQUES,J.M.GUSS,J.P.MACKAY JRNL TITL REDISCOVERING DNA RECOGNITION BY CLASSICAL ZINC FINGERS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 15288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.5380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 909 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.58000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : 2.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1858 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1041 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2673 ; 1.183 ; 2.482 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2534 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 106 ; 4.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;28.896 ;21.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 160 ;14.019 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.504 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1475 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 323 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 529 ; 1.042 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 213 ; 0.264 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 843 ; 1.910 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1329 ; 3.015 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 4.277 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3587 -1.5944 41.8660 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.1827 REMARK 3 T33: 0.1285 T12: -0.0165 REMARK 3 T13: -0.0127 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 7.5836 L22: 3.2506 REMARK 3 L33: 1.3724 L12: 3.7592 REMARK 3 L13: -0.1325 L23: 0.7492 REMARK 3 S TENSOR REMARK 3 S11: -0.1464 S12: 0.2549 S13: -0.6245 REMARK 3 S21: 0.0032 S22: 0.0658 S23: -0.2031 REMARK 3 S31: -0.0476 S32: 0.0163 S33: 0.0806 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5924 0.7169 41.8937 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.3497 REMARK 3 T33: 0.2732 T12: -0.0642 REMARK 3 T13: 0.0141 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 6.5397 L22: 3.0718 REMARK 3 L33: 0.4202 L12: 4.1170 REMARK 3 L13: 1.4746 L23: 0.8080 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.2089 S13: 0.1162 REMARK 3 S21: 0.0538 S22: -0.0558 S23: -0.1092 REMARK 3 S31: -0.0196 S32: 0.0619 S33: 0.0577 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 471 C 522 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9097 8.4499 33.6502 REMARK 3 T TENSOR REMARK 3 T11: 0.2714 T22: 0.4702 REMARK 3 T33: 0.1212 T12: -0.0103 REMARK 3 T13: 0.0384 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.0867 L22: 6.5742 REMARK 3 L33: 9.0871 L12: 0.9083 REMARK 3 L13: 2.0865 L23: 4.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: 0.6882 S13: 0.0845 REMARK 3 S21: -0.0557 S22: -0.3277 S23: -0.0172 REMARK 3 S31: -0.1135 S32: -0.7093 S33: 0.2903 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 470 D 523 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9806 -1.8645 32.4413 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.1553 REMARK 3 T33: 0.3243 T12: -0.0166 REMARK 3 T13: -0.0381 T23: 0.1103 REMARK 3 L TENSOR REMARK 3 L11: 4.8323 L22: 5.3419 REMARK 3 L33: 4.2381 L12: 0.2189 REMARK 3 L13: 0.9333 L23: 0.0333 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: 0.4149 S13: 0.7919 REMARK 3 S21: -0.1501 S22: -0.0706 S23: 0.2485 REMARK 3 S31: -0.3698 S32: -0.1160 S33: 0.3078 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 1 REMARK 3 RESIDUE RANGE : B 21 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0628 -0.4840 36.8457 REMARK 3 T TENSOR REMARK 3 T11: 0.1579 T22: 0.2434 REMARK 3 T33: 0.7750 T12: 0.0140 REMARK 3 T13: 0.0270 T23: 0.3615 REMARK 3 L TENSOR REMARK 3 L11: 24.7229 L22: 17.9603 REMARK 3 L33: 5.7343 L12: 10.6618 REMARK 3 L13: 3.4996 L23: -6.8533 REMARK 3 S TENSOR REMARK 3 S11: -0.0959 S12: 0.2950 S13: 0.1378 REMARK 3 S21: 0.2475 S22: -0.5153 S23: -0.9868 REMARK 3 S31: -0.1965 S32: 0.4129 S33: 0.6112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 61.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M ZINC CHLORIDE, 0.1M MES, 20% PEG REMARK 280 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.33500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.33500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 467 REMARK 465 SER C 468 REMARK 465 SER C 469 REMARK 465 SER C 470 REMARK 465 LYS C 523 REMARK 465 GLY D 467 REMARK 465 SER D 468 REMARK 465 SER D 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 523 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 12 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT A 14 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 19 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 7 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 16 O4' - C1' - N1 ANGL. DEV. = -6.2 DEGREES REMARK 500 DA B 20 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 21 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 12 N7 REMARK 620 2 HOH B 51 O 82.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 22 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT B 17 OP2 REMARK 620 2 HOH B 53 O 111.5 REMARK 620 3 HOH D 50 O 118.8 123.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 968 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 473 SG REMARK 620 2 CYS C 476 SG 107.3 REMARK 620 3 HIS C 489 NE2 110.9 108.7 REMARK 620 4 HIS C 493 NE2 106.9 117.5 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 967 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 501 SG REMARK 620 2 CYS C 504 SG 115.9 REMARK 620 3 HIS C 517 NE2 110.8 106.4 REMARK 620 4 HIS C 522 NE2 97.6 130.3 93.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 968 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 473 SG REMARK 620 2 CYS D 476 SG 115.6 REMARK 620 3 HIS D 489 NE2 112.5 109.0 REMARK 620 4 HIS D 493 NE2 100.5 115.7 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 967 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 501 SG REMARK 620 2 CYS D 504 SG 104.4 REMARK 620 3 HIS D 517 NE2 112.6 87.5 REMARK 620 4 HIS D 522 NE2 112.9 122.1 114.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 967 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 967 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 22 DBREF 3UK3 C 469 523 UNP O75362 ZN217_HUMAN 469 523 DBREF 3UK3 D 469 523 UNP O75362 ZN217_HUMAN 469 523 DBREF 3UK3 A 1 20 PDB 3UK3 3UK3 1 20 DBREF 3UK3 B 1 20 PDB 3UK3 3UK3 1 20 SEQADV 3UK3 GLY C 467 UNP O75362 EXPRESSION TAG SEQADV 3UK3 SER C 468 UNP O75362 EXPRESSION TAG SEQADV 3UK3 GLY D 467 UNP O75362 EXPRESSION TAG SEQADV 3UK3 SER D 468 UNP O75362 EXPRESSION TAG SEQRES 1 A 20 DT DT DT DG DC DA DG DA DA DT DC DG DA SEQRES 2 A 20 DT DT DC DT DG DC DA SEQRES 1 B 20 DA DA DT DG DC DA DG DA DA DT DC DG DA SEQRES 2 B 20 DT DT DC DT DG DC DA SEQRES 1 C 57 GLY SER SER SER ARG GLU CYS SER TYR CYS GLY LYS PHE SEQRES 2 C 57 PHE ARG SER ASN TYR TYR LEU ASN ILE HIS LEU ARG THR SEQRES 3 C 57 HIS THR GLY GLU LYS PRO TYR LYS CYS GLU PHE CYS GLU SEQRES 4 C 57 TYR ALA ALA ALA GLN LYS THR SER LEU ARG TYR HIS LEU SEQRES 5 C 57 GLU ARG HIS HIS LYS SEQRES 1 D 57 GLY SER SER SER ARG GLU CYS SER TYR CYS GLY LYS PHE SEQRES 2 D 57 PHE ARG SER ASN TYR TYR LEU ASN ILE HIS LEU ARG THR SEQRES 3 D 57 HIS THR GLY GLU LYS PRO TYR LYS CYS GLU PHE CYS GLU SEQRES 4 D 57 TYR ALA ALA ALA GLN LYS THR SER LEU ARG TYR HIS LEU SEQRES 5 D 57 GLU ARG HIS HIS LYS HET ZN B 21 1 HET ZN B 22 1 HET ZN C 967 1 HET ZN C 968 1 HET ZN C 1 1 HET CL C 524 1 HET ZN D 967 1 HET ZN D 968 1 HET ZN D 1 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 5 ZN 8(ZN 2+) FORMUL 10 CL CL 1- FORMUL 14 HOH *57(H2 O) HELIX 1 1 SER C 482 GLY C 495 1 14 HELIX 2 2 GLN C 510 HIS C 522 1 13 HELIX 3 3 SER D 482 GLY D 495 1 14 HELIX 4 4 GLN D 510 HIS D 522 1 13 SHEET 1 A 2 TYR C 499 LYS C 500 0 SHEET 2 A 2 ALA C 507 ALA C 508 -1 O ALA C 508 N TYR C 499 SHEET 1 B 2 TYR D 499 LYS D 500 0 SHEET 2 B 2 ALA D 507 ALA D 508 -1 O ALA D 508 N TYR D 499 LINK N7 DG B 12 ZN ZN B 21 1555 1555 2.49 LINK OP2 DT B 17 ZN ZN B 22 1555 1555 2.25 LINK ZN ZN B 21 O HOH B 51 1555 1555 2.46 LINK ZN ZN B 22 O HOH B 53 1555 1555 2.62 LINK ZN ZN B 22 O HOH D 50 1555 1555 2.25 LINK ZN ZN C 1 NE2 HIS C 521 1555 1555 2.08 LINK SG CYS C 473 ZN ZN C 968 1555 1555 2.47 LINK SG CYS C 476 ZN ZN C 968 1555 1555 2.24 LINK NE2 HIS C 489 ZN ZN C 968 1555 1555 2.01 LINK NE2 HIS C 493 ZN ZN C 968 1555 1555 2.12 LINK SG CYS C 501 ZN ZN C 967 1555 1555 2.36 LINK SG CYS C 504 ZN ZN C 967 1555 1555 2.10 LINK NE2 HIS C 517 ZN ZN C 967 1555 1555 2.09 LINK NE2 HIS C 522 ZN ZN C 967 1555 1555 2.17 LINK SG CYS D 473 ZN ZN D 968 1555 1555 2.22 LINK SG CYS D 476 ZN ZN D 968 1555 1555 2.22 LINK NE2 HIS D 489 ZN ZN D 968 1555 1555 2.05 LINK NE2 HIS D 493 ZN ZN D 968 1555 1555 2.05 LINK SG CYS D 501 ZN ZN D 967 1555 1555 2.21 LINK SG CYS D 504 ZN ZN D 967 1555 1555 2.29 LINK NE2 HIS D 517 ZN ZN D 967 1555 1555 2.43 LINK NE2 HIS D 522 ZN ZN D 967 1555 1555 2.01 SITE 1 AC1 4 CYS C 501 CYS C 504 HIS C 517 HIS C 522 SITE 1 AC2 4 CYS C 473 CYS C 476 HIS C 489 HIS C 493 SITE 1 AC3 4 CYS D 501 CYS D 504 HIS D 517 HIS D 522 SITE 1 AC4 4 CYS D 473 CYS D 476 HIS D 489 HIS D 493 SITE 1 AC5 2 DA A 13 HIS C 521 SITE 1 AC6 2 DG B 12 HOH B 51 SITE 1 AC7 4 GLU C 502 GLU D 472 GLY D 477 HIS D 521 SITE 1 AC8 3 DT B 17 HOH B 53 HOH D 50 CRYST1 124.670 40.980 52.040 90.00 97.21 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008021 0.000000 0.001015 0.00000 SCALE2 0.000000 0.024402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019369 0.00000