HEADER HYDROLASE,SIGNALING PROTEIN 31-AUG-11 3TM8 TITLE BD1817, A HDG"Y"P PROTEIN FROM BDELLOVIBRIO BACTERIOVORUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BD1817; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BDELLOVIBRIO BACTERIOVORUS; SOURCE 3 ORGANISM_TAXID: 264462; SOURCE 4 STRAIN: HD100; SOURCE 5 GENE: BD1817; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HD-GYP, PHOSPHODIESTERASE, UNKNOWN FUNCTION, HYDROLASE,SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LOVERING REVDAT 2 19-JUN-13 3TM8 1 JRNL REMARK REVDAT 1 19-OCT-11 3TM8 0 JRNL AUTH A.L.LOVERING,M.J.CAPENESS,C.LAMBERT,L.HOBLEY,R.E.SOCKETT JRNL TITL THE STRUCTURE OF AN UNCONVENTIONAL HD-GYP PROTEIN FROM JRNL TITL 2 BDELLOVIBRIO REVEALS THE ROLES OF CONSERVED RESIDUES IN THIS JRNL TITL 3 CLASS OF CYCLIC-DI-GMP PHOSPHODIESTERASES. JRNL REF MBIO V. 2 2011 JRNL REFN ESSN 2150-7511 JRNL PMID 21990613 JRNL DOI 10.1128/MBIO.00163-11 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 161191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4110 - 3.9620 0.96 5060 254 0.2205 0.2334 REMARK 3 2 3.9620 - 3.1458 1.00 5144 268 0.1807 0.1989 REMARK 3 3 3.1458 - 2.7484 1.00 5169 276 0.1829 0.2021 REMARK 3 4 2.7484 - 2.4973 1.00 5142 256 0.1710 0.1931 REMARK 3 5 2.4973 - 2.3183 1.00 5154 273 0.1554 0.1734 REMARK 3 6 2.3183 - 2.1817 1.00 5164 256 0.1480 0.1728 REMARK 3 7 2.1817 - 2.0725 1.00 5106 283 0.1486 0.1639 REMARK 3 8 2.0725 - 1.9823 1.00 5134 281 0.1562 0.2030 REMARK 3 9 1.9823 - 1.9060 1.00 5145 268 0.1478 0.1845 REMARK 3 10 1.9060 - 1.8402 1.00 5149 251 0.1471 0.1800 REMARK 3 11 1.8402 - 1.7827 1.00 5092 276 0.1453 0.1880 REMARK 3 12 1.7827 - 1.7317 1.00 5125 295 0.1399 0.1905 REMARK 3 13 1.7317 - 1.6861 1.00 5051 267 0.1336 0.1620 REMARK 3 14 1.6861 - 1.6450 1.00 5184 259 0.1300 0.1703 REMARK 3 15 1.6450 - 1.6076 1.00 5148 260 0.1245 0.1599 REMARK 3 16 1.6076 - 1.5734 1.00 5025 264 0.1280 0.1635 REMARK 3 17 1.5734 - 1.5419 1.00 5195 257 0.1317 0.1888 REMARK 3 18 1.5419 - 1.5128 1.00 5109 258 0.1286 0.1811 REMARK 3 19 1.5128 - 1.4858 1.00 5139 244 0.1289 0.1842 REMARK 3 20 1.4858 - 1.4606 1.00 5119 280 0.1330 0.1609 REMARK 3 21 1.4606 - 1.4371 1.00 5090 259 0.1438 0.2037 REMARK 3 22 1.4371 - 1.4150 1.00 5082 305 0.1450 0.1816 REMARK 3 23 1.4150 - 1.3941 1.00 5115 276 0.1550 0.2011 REMARK 3 24 1.3941 - 1.3745 1.00 5071 243 0.1633 0.2113 REMARK 3 25 1.3745 - 1.3559 0.99 5074 285 0.1765 0.2192 REMARK 3 26 1.3559 - 1.3383 0.99 5063 298 0.1926 0.2399 REMARK 3 27 1.3383 - 1.3216 0.99 5025 282 0.2128 0.2369 REMARK 3 28 1.3216 - 1.3057 0.99 5022 273 0.2336 0.2781 REMARK 3 29 1.3057 - 1.2905 0.99 5050 289 0.2735 0.2984 REMARK 3 30 1.2905 - 1.2800 0.97 4960 249 0.2995 0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 K_SOL : 0.51 REMARK 3 B_SOL : 70.95 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20720 REMARK 3 B22 (A**2) : 0.74090 REMARK 3 B33 (A**2) : -0.53360 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -1.00050 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5163 REMARK 3 ANGLE : 1.023 7017 REMARK 3 CHIRALITY : 0.071 800 REMARK 3 PLANARITY : 0.004 913 REMARK 3 DIHEDRAL : 11.790 2018 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-11. REMARK 100 THE RCSB ID CODE IS RCSB067649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS PH 5.5, 0.2M AMMONIUM REMARK 280 ACETATE, 25% W/V PEG 3350, 20% V/V DMSO, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.92000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 53 -62.08 -120.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 601 DISTANCE = 5.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 903 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 312 O REMARK 620 2 PO4 A 901 O4 90.8 REMARK 620 3 ASP A 184 OD1 91.4 94.0 REMARK 620 4 HIS A 212 NE2 176.0 86.0 91.2 REMARK 620 5 GLU A 238 OE2 84.7 85.2 176.0 92.6 REMARK 620 6 HIS A 237 NE2 88.6 175.0 91.0 94.4 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 903 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 577 O REMARK 620 2 PO4 B 901 O4 91.9 REMARK 620 3 ASP B 184 OD1 91.2 94.2 REMARK 620 4 GLU B 238 OE2 85.0 85.2 176.1 REMARK 620 5 HIS B 237 NE2 86.4 175.5 90.1 90.5 REMARK 620 6 HIS B 212 NE2 177.2 86.3 91.1 92.7 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 902 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 577 O REMARK 620 2 PO4 B 901 O2 93.5 REMARK 620 3 ASP B 184 OD2 98.1 92.0 REMARK 620 4 HIS B 150 NE2 168.4 91.7 92.1 REMARK 620 5 ASN B 265 OD1 85.4 98.9 168.4 83.5 REMARK 620 6 HIS B 183 NE2 86.8 175.2 83.2 88.9 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 902 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 312 O REMARK 620 2 PO4 A 901 O2 92.2 REMARK 620 3 ASP A 184 OD2 97.5 90.9 REMARK 620 4 HIS A 150 NE2 170.3 91.2 91.5 REMARK 620 5 ASN A 265 OD1 86.1 100.0 168.5 84.3 REMARK 620 6 HIS A 183 NE2 88.4 173.6 82.8 89.2 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TM8 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION P21A FORM REMARK 900 RELATED ID: 3TMB RELATED DB: PDB REMARK 900 P21B FORM REMARK 900 RELATED ID: 3TMC RELATED DB: PDB REMARK 900 P1 FORM REMARK 900 RELATED ID: 3TMD RELATED DB: PDB REMARK 900 STRUCTURE OF BD1817 DBREF 3TM8 A 1 308 UNP Q6MM30 Q6MM30_BDEBA 1 308 DBREF 3TM8 B 1 308 UNP Q6MM30 Q6MM30_BDEBA 1 308 SEQADV 3TM8 MET A -19 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 GLY A -18 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER A -17 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER A -16 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A -15 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A -14 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A -13 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A -12 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A -11 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A -10 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER A -9 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER A -8 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 GLY A -7 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 LEU A -6 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 VAL A -5 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 PRO A -4 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 ARG A -3 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 GLY A -2 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER A -1 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS A 0 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 MET B -19 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 GLY B -18 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER B -17 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER B -16 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B -15 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B -14 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B -13 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B -12 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B -11 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B -10 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER B -9 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER B -8 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 GLY B -7 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 LEU B -6 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 VAL B -5 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 PRO B -4 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 ARG B -3 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 GLY B -2 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 SER B -1 UNP Q6MM30 EXPRESSION TAG SEQADV 3TM8 HIS B 0 UNP Q6MM30 EXPRESSION TAG SEQRES 1 A 328 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 328 LEU VAL PRO ARG GLY SER HIS MET ASP TYR VAL SER ILE SEQRES 3 A 328 ARG VAL SER THR LEU ARG GLY ASP GLN LYS ILE ASP PHE SEQRES 4 A 328 ASN ALA TYR VAL LYS ILE ASN ASP LYS MET ILE LEU TYR SEQRES 5 A 328 LEU ARG ARG GLY ASP SER PHE GLU GLY GLU ARG LEU LYS SEQRES 6 A 328 ARG LEU LYS ASP LYS LYS LEU ARG LYS MET TYR ILE LEU SEQRES 7 A 328 THR ASP GLU GLU ASN SER TYR ARG THR TYR LEU GLN LYS SEQRES 8 A 328 ASN ILE GLU THR ALA TYR ASP ASP THR THR GLY LYS ASP SEQRES 9 A 328 ILE GLN THR ARG ALA ASP ILE ILE GLN GLY SER GLN GLN SEQRES 10 A 328 ASN ASN ALA GLU GLU VAL PHE GLU ASN PRO GLU ASN VAL SEQRES 11 A 328 GLU SER TYR ASN TYR CYS LYS ASP ALA ALA GLY LYS TYR SEQRES 12 A 328 VAL ASN PHE ILE MET SER ASN ALA GLN ALA LEU SER ALA SEQRES 13 A 328 VAL MET ASN ILE GLU ASN THR ASP LYS THR ILE SER HIS SEQRES 14 A 328 HIS GLY VAL THR VAL SER THR LEU SER ILE ALA LEU ALA SEQRES 15 A 328 GLN LYS LEU GLY ILE THR ASP PRO LYS LYS THR GLN LEU SEQRES 16 A 328 LEU THR LEU GLY ALA LEU LEU HIS ASP TYR GLY HIS HIS SEQRES 17 A 328 HIS SER PRO LEU ASN LEU ASN GLN PRO LEU ASP SER MET SEQRES 18 A 328 SER PRO GLU ASP LEU ALA LEU TRP LYS LYS HIS PRO ILE SEQRES 19 A 328 GLU GLY ALA GLN LYS VAL GLN ASP LYS LYS HIS PHE ASP SEQRES 20 A 328 GLN THR VAL ILE ASN ILE ILE GLY GLN HIS GLU GLU THR SEQRES 21 A 328 ILE ASN GLY THR GLY PRO LYS GLY LEU ARG GLU LYS ASP SEQRES 22 A 328 MET ASP PRO LEU ALA VAL LEU VAL SER SER ALA ASN ALA SEQRES 23 A 328 MET ASP ARG LEU ILE THR PHE GLU GLY VAL PRO LYS ALA SEQRES 24 A 328 GLU ALA ALA LYS LYS LEU MET ILE ASP HIS VAL GLY LYS SEQRES 25 A 328 HIS PRO LEU GLN HIS ILE GLN HIS LEU ASN ASP ILE LEU SEQRES 26 A 328 LYS GLY LEU SEQRES 1 B 328 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 328 LEU VAL PRO ARG GLY SER HIS MET ASP TYR VAL SER ILE SEQRES 3 B 328 ARG VAL SER THR LEU ARG GLY ASP GLN LYS ILE ASP PHE SEQRES 4 B 328 ASN ALA TYR VAL LYS ILE ASN ASP LYS MET ILE LEU TYR SEQRES 5 B 328 LEU ARG ARG GLY ASP SER PHE GLU GLY GLU ARG LEU LYS SEQRES 6 B 328 ARG LEU LYS ASP LYS LYS LEU ARG LYS MET TYR ILE LEU SEQRES 7 B 328 THR ASP GLU GLU ASN SER TYR ARG THR TYR LEU GLN LYS SEQRES 8 B 328 ASN ILE GLU THR ALA TYR ASP ASP THR THR GLY LYS ASP SEQRES 9 B 328 ILE GLN THR ARG ALA ASP ILE ILE GLN GLY SER GLN GLN SEQRES 10 B 328 ASN ASN ALA GLU GLU VAL PHE GLU ASN PRO GLU ASN VAL SEQRES 11 B 328 GLU SER TYR ASN TYR CYS LYS ASP ALA ALA GLY LYS TYR SEQRES 12 B 328 VAL ASN PHE ILE MET SER ASN ALA GLN ALA LEU SER ALA SEQRES 13 B 328 VAL MET ASN ILE GLU ASN THR ASP LYS THR ILE SER HIS SEQRES 14 B 328 HIS GLY VAL THR VAL SER THR LEU SER ILE ALA LEU ALA SEQRES 15 B 328 GLN LYS LEU GLY ILE THR ASP PRO LYS LYS THR GLN LEU SEQRES 16 B 328 LEU THR LEU GLY ALA LEU LEU HIS ASP TYR GLY HIS HIS SEQRES 17 B 328 HIS SER PRO LEU ASN LEU ASN GLN PRO LEU ASP SER MET SEQRES 18 B 328 SER PRO GLU ASP LEU ALA LEU TRP LYS LYS HIS PRO ILE SEQRES 19 B 328 GLU GLY ALA GLN LYS VAL GLN ASP LYS LYS HIS PHE ASP SEQRES 20 B 328 GLN THR VAL ILE ASN ILE ILE GLY GLN HIS GLU GLU THR SEQRES 21 B 328 ILE ASN GLY THR GLY PRO LYS GLY LEU ARG GLU LYS ASP SEQRES 22 B 328 MET ASP PRO LEU ALA VAL LEU VAL SER SER ALA ASN ALA SEQRES 23 B 328 MET ASP ARG LEU ILE THR PHE GLU GLY VAL PRO LYS ALA SEQRES 24 B 328 GLU ALA ALA LYS LYS LEU MET ILE ASP HIS VAL GLY LYS SEQRES 25 B 328 HIS PRO LEU GLN HIS ILE GLN HIS LEU ASN ASP ILE LEU SEQRES 26 B 328 LYS GLY LEU HET PO4 A 901 5 HET FE A 902 1 HET FE A 903 1 HET DMS A 309 4 HET DMS A 310 4 HET PO4 B 901 5 HET FE B 902 1 HET FE B 903 1 HET DMS B 309 4 HET EDO B 310 4 HET EDO B 311 4 HETNAM PO4 PHOSPHATE ION HETNAM FE FE (III) ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 FE 4(FE 3+) FORMUL 6 DMS 3(C2 H6 O S) FORMUL 12 EDO 2(C2 H6 O2) FORMUL 14 HOH *574(H2 O) HELIX 1 1 SER A 9 LEU A 11 5 3 HELIX 2 2 GLU A 40 LYS A 48 5 9 HELIX 3 3 GLU A 61 ASP A 78 1 18 HELIX 4 4 ASP A 84 ASN A 106 1 23 HELIX 5 5 ASN A 109 ASN A 130 1 22 HELIX 6 6 GLN A 132 ASN A 139 1 8 HELIX 7 7 THR A 146 GLY A 166 1 21 HELIX 8 8 ASP A 169 HIS A 183 1 15 HELIX 9 9 ASP A 184 HIS A 188 5 5 HELIX 10 10 PRO A 197 MET A 201 5 5 HELIX 11 11 SER A 202 GLN A 221 1 20 HELIX 12 12 ASP A 227 HIS A 237 1 11 HELIX 13 13 ARG A 250 MET A 254 5 5 HELIX 14 14 ASP A 255 GLU A 274 1 20 HELIX 15 15 PRO A 277 ALA A 279 5 3 HELIX 16 16 GLU A 280 HIS A 289 1 10 HELIX 17 17 PRO A 294 LYS A 306 1 13 HELIX 18 18 SER B 9 LEU B 11 5 3 HELIX 19 19 GLU B 40 LYS B 48 5 9 HELIX 20 20 GLU B 61 ASP B 78 1 18 HELIX 21 21 ASP B 84 ASN B 106 1 23 HELIX 22 22 ASN B 109 ASN B 130 1 22 HELIX 23 23 GLN B 132 ASN B 139 1 8 HELIX 24 24 THR B 146 GLY B 166 1 21 HELIX 25 25 ASP B 169 HIS B 183 1 15 HELIX 26 26 ASP B 184 HIS B 188 5 5 HELIX 27 27 PRO B 197 MET B 201 5 5 HELIX 28 28 SER B 202 GLN B 221 1 20 HELIX 29 29 ASP B 227 HIS B 237 1 11 HELIX 30 30 ARG B 250 MET B 254 5 5 HELIX 31 31 ASP B 255 GLU B 274 1 20 HELIX 32 32 PRO B 277 ALA B 279 5 3 HELIX 33 33 GLU B 280 HIS B 289 1 10 HELIX 34 34 PRO B 294 LYS B 306 1 13 SHEET 1 A 2 TYR A 3 ARG A 7 0 SHEET 2 A 2 LYS A 54 LEU A 58 -1 O MET A 55 N ILE A 6 SHEET 1 B 2 ALA A 21 ILE A 25 0 SHEET 2 B 2 LYS A 28 LEU A 33 -1 O ILE A 30 N VAL A 23 SHEET 1 C 2 TYR B 3 ARG B 7 0 SHEET 2 C 2 LYS B 54 LEU B 58 -1 O MET B 55 N ILE B 6 SHEET 1 D 2 ALA B 21 ILE B 25 0 SHEET 2 D 2 LYS B 28 LEU B 33 -1 O ILE B 30 N VAL B 23 LINK FE FE A 903 O HOH A 312 1555 1555 1.93 LINK FE FE B 903 O HOH B 577 1555 1555 1.95 LINK FE FE B 902 O HOH B 577 1555 1555 1.97 LINK FE FE A 902 O HOH A 312 1555 1555 1.97 LINK O2 PO4 A 901 FE FE A 902 1555 1555 2.06 LINK O2 PO4 B 901 FE FE B 902 1555 1555 2.07 LINK O4 PO4 B 901 FE FE B 903 1555 1555 2.09 LINK OD2 ASP A 184 FE FE A 902 1555 1555 2.10 LINK OD2 ASP B 184 FE FE B 902 1555 1555 2.11 LINK O4 PO4 A 901 FE FE A 903 1555 1555 2.11 LINK NE2 HIS B 150 FE FE B 902 1555 1555 2.13 LINK NE2 HIS A 150 FE FE A 902 1555 1555 2.13 LINK OD1 ASN A 265 FE FE A 902 1555 1555 2.14 LINK OD1 ASP B 184 FE FE B 903 1555 1555 2.14 LINK OD1 ASP A 184 FE FE A 903 1555 1555 2.15 LINK OD1 ASN B 265 FE FE B 902 1555 1555 2.16 LINK OE2 GLU B 238 FE FE B 903 1555 1555 2.17 LINK NE2 HIS A 212 FE FE A 903 1555 1555 2.18 LINK NE2 HIS B 237 FE FE B 903 1555 1555 2.19 LINK NE2 HIS B 212 FE FE B 903 1555 1555 2.19 LINK OE2 GLU A 238 FE FE A 903 1555 1555 2.21 LINK NE2 HIS A 237 FE FE A 903 1555 1555 2.21 LINK NE2 HIS A 183 FE FE A 902 1555 1555 2.27 LINK NE2 HIS B 183 FE FE B 902 1555 1555 2.28 SITE 1 AC1 12 HIS A 150 ASP A 184 HIS A 187 TRP A 209 SITE 2 AC1 12 HIS A 212 GLU A 238 ASN A 265 ARG A 269 SITE 3 AC1 12 PHE A 273 HOH A 312 FE A 902 FE A 903 SITE 1 AC2 7 HIS A 150 HIS A 183 ASP A 184 ASN A 265 SITE 2 AC2 7 HOH A 312 PO4 A 901 FE A 903 SITE 1 AC3 7 ASP A 184 HIS A 212 HIS A 237 GLU A 238 SITE 2 AC3 7 HOH A 312 PO4 A 901 FE A 902 SITE 1 AC4 8 MET A 138 ILE A 140 ASN A 142 HIS A 149 SITE 2 AC4 8 THR A 153 ASP A 268 THR A 272 HOH A 328 SITE 1 AC5 5 VAL A 8 SER A 9 ARG A 12 LEU A 47 SITE 2 AC5 5 ASP A 144 SITE 1 AC6 12 HIS B 150 ASP B 184 HIS B 187 TRP B 209 SITE 2 AC6 12 HIS B 212 GLU B 238 ASN B 265 ARG B 269 SITE 3 AC6 12 PHE B 273 HOH B 577 FE B 902 FE B 903 SITE 1 AC7 7 HIS B 150 HIS B 183 ASP B 184 ASN B 265 SITE 2 AC7 7 HOH B 577 PO4 B 901 FE B 903 SITE 1 AC8 7 ASP B 184 HIS B 212 HIS B 237 GLU B 238 SITE 2 AC8 7 HOH B 577 PO4 B 901 FE B 902 SITE 1 AC9 8 MET B 138 ILE B 140 ASN B 142 HIS B 149 SITE 2 AC9 8 THR B 153 ASP B 268 THR B 272 HOH B 347 SITE 1 BC1 7 VAL B 8 SER B 9 ARG B 12 LEU B 47 SITE 2 BC1 7 HOH B 337 HOH B 346 HOH B 350 SITE 1 BC2 5 TYR B 77 ASP B 78 ASP B 79 ASN B 125 SITE 2 BC2 5 ILE B 287 CRYST1 47.170 79.840 84.750 90.00 95.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021200 0.000000 0.002224 0.00000 SCALE2 0.000000 0.012525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011864 0.00000