HEADER LYASE 01-AUG-11 3T8B TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MENB WITH ALTERED TITLE 2 HEXAMERIC ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MENB, DHNA-COA SYNTHASE; COMPND 5 EC: 4.1.3.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0548C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS CROTONASE SUPERFAMILY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-J.LI,X.LI,N.LIU,H.ZHANG,J.TRUGLIO,S.MISHRA,C.KISKER,M.GARCIA-DIAZ, AUTHOR 2 P.TONGE REVDAT 4 24-JAN-18 3T8B 1 AUTHOR REVDAT 3 08-NOV-17 3T8B 1 REMARK REVDAT 2 16-NOV-11 3T8B 1 JRNL REVDAT 1 24-AUG-11 3T8B 0 JRNL AUTH H.J.LI,X.LI,N.LIU,H.ZHANG,J.J.TRUGLIO,S.MISHRA,C.KISKER, JRNL AUTH 2 M.GARCIA-DIAZ,P.J.TONGE JRNL TITL MECHANISM OF THE INTRAMOLECULAR CLAISEN CONDENSATION JRNL TITL 2 REACTION CATALYZED BY MENB, A CROTONASE SUPERFAMILY MEMBER. JRNL REF BIOCHEMISTRY V. 50 9532 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21830810 JRNL DOI 10.1021/BI200877X REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 53381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9862 - 4.4746 1.00 2640 150 0.1696 0.1583 REMARK 3 2 4.4746 - 3.5525 1.00 2669 132 0.1390 0.1544 REMARK 3 3 3.5525 - 3.1037 1.00 2613 150 0.1494 0.2028 REMARK 3 4 3.1037 - 2.8201 0.99 2616 156 0.1503 0.1973 REMARK 3 5 2.8201 - 2.6180 0.99 2655 139 0.1536 0.1733 REMARK 3 6 2.6180 - 2.4637 0.99 2609 136 0.1401 0.2026 REMARK 3 7 2.4637 - 2.3403 0.99 2602 132 0.1308 0.1829 REMARK 3 8 2.3403 - 2.2384 0.99 2598 172 0.1192 0.1935 REMARK 3 9 2.2384 - 2.1523 0.99 2647 124 0.1172 0.1924 REMARK 3 10 2.1523 - 2.0780 0.97 2607 118 0.1087 0.1744 REMARK 3 11 2.0780 - 2.0131 0.97 2586 126 0.1117 0.1716 REMARK 3 12 2.0131 - 1.9555 0.96 2523 135 0.1076 0.1888 REMARK 3 13 1.9555 - 1.9040 0.96 2518 146 0.1060 0.1615 REMARK 3 14 1.9040 - 1.8576 0.93 2469 141 0.1136 0.2044 REMARK 3 15 1.8576 - 1.8154 0.93 2435 144 0.1191 0.1988 REMARK 3 16 1.8154 - 1.7767 0.92 2435 139 0.1292 0.1846 REMARK 3 17 1.7767 - 1.7412 0.91 2397 124 0.1319 0.1916 REMARK 3 18 1.7412 - 1.7083 0.89 2385 134 0.1414 0.2150 REMARK 3 19 1.7083 - 1.6778 0.87 2331 126 0.1527 0.2792 REMARK 3 20 1.6778 - 1.6494 0.87 2305 117 0.1749 0.2652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 51.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.00060 REMARK 3 B22 (A**2) : -3.00060 REMARK 3 B33 (A**2) : 6.00120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3508 REMARK 3 ANGLE : 0.830 4765 REMARK 3 CHIRALITY : 0.062 519 REMARK 3 PLANARITY : 0.003 627 REMARK 3 DIHEDRAL : 15.818 1230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55893 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.649 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1Q51 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 24.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 200 MM LITHIUM SULFATE, REMARK 280 100 MM TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.11650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.17238 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.71300 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 66.11650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 38.17238 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.71300 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 66.11650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 38.17238 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.71300 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.34476 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.42600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 76.34476 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.42600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 76.34476 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 GLN A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 ARG A 112 REMARK 465 SER A 113 REMARK 465 GLY A 114 REMARK 465 TYR A 115 REMARK 465 GLN A 116 REMARK 465 TYR A 117 REMARK 465 ALA A 118 REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 ASP A 121 REMARK 465 THR A 122 REMARK 465 ALA A 123 REMARK 465 ASP A 124 REMARK 465 THR A 125 REMARK 465 VAL A 126 REMARK 465 ASP A 127 REMARK 465 VAL A 128 REMARK 465 ALA A 129 REMARK 465 ARG A 130 REMARK 465 ALA A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 274 REMARK 465 GLN A 275 REMARK 465 GLN A 276 REMARK 465 LEU A 277 REMARK 465 PHE A 278 REMARK 465 ALA A 279 REMARK 465 GLY A 280 REMARK 465 GLU A 281 REMARK 465 ALA A 282 REMARK 465 THR A 283 REMARK 465 ARG A 284 REMARK 465 LEU A 285 REMARK 465 ALA A 286 REMARK 465 TYR A 287 REMARK 465 MET A 288 REMARK 465 THR A 289 REMARK 465 ASP A 290 REMARK 465 GLU A 291 REMARK 465 ALA A 292 REMARK 465 VAL A 293 REMARK 465 GLU A 294 REMARK 465 GLY A 295 REMARK 465 ARG A 296 REMARK 465 ASP A 297 REMARK 465 ALA A 298 REMARK 465 PHE A 299 REMARK 465 LEU A 300 REMARK 465 GLN A 301 REMARK 465 LYS A 302 REMARK 465 ARG A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ASP A 306 REMARK 465 TRP A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 PHE A 310 REMARK 465 PRO A 311 REMARK 465 ARG A 312 REMARK 465 TYR A 313 REMARK 465 PHE A 314 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 SER B 16 REMARK 465 ARG B 108 REMARK 465 ILE B 109 REMARK 465 ARG B 110 REMARK 465 GLY B 111 REMARK 465 ARG B 112 REMARK 465 SER B 113 REMARK 465 GLY B 114 REMARK 465 TYR B 115 REMARK 465 GLN B 116 REMARK 465 TYR B 117 REMARK 465 ALA B 118 REMARK 465 SER B 119 REMARK 465 GLY B 120 REMARK 465 ASP B 121 REMARK 465 THR B 122 REMARK 465 ALA B 123 REMARK 465 ASP B 124 REMARK 465 THR B 125 REMARK 465 VAL B 126 REMARK 465 ASP B 127 REMARK 465 VAL B 128 REMARK 465 ALA B 129 REMARK 465 ARG B 130 REMARK 465 ALA B 131 REMARK 465 ALA B 186 REMARK 465 ASP B 187 REMARK 465 VAL B 188 REMARK 465 GLY B 189 REMARK 465 SER B 190 REMARK 465 PHE B 191 REMARK 465 ASP B 192 REMARK 465 GLY B 193 REMARK 465 GLY B 194 REMARK 465 TYR B 195 REMARK 465 PRO B 255 REMARK 465 GLN B 256 REMARK 465 ALA B 257 REMARK 465 GLN B 258 REMARK 465 ARG B 259 REMARK 465 MET B 260 REMARK 465 LEU B 261 REMARK 465 LYS B 262 REMARK 465 PHE B 263 REMARK 465 ALA B 264 REMARK 465 PHE B 265 REMARK 465 ASN B 266 REMARK 465 LEU B 267 REMARK 465 LEU B 268 REMARK 465 ASP B 269 REMARK 465 ASP B 270 REMARK 465 GLY B 271 REMARK 465 LEU B 272 REMARK 465 VAL B 273 REMARK 465 GLY B 274 REMARK 465 GLN B 275 REMARK 465 GLN B 276 REMARK 465 LEU B 277 REMARK 465 PHE B 278 REMARK 465 ALA B 279 REMARK 465 GLY B 280 REMARK 465 GLU B 281 REMARK 465 ALA B 282 REMARK 465 THR B 283 REMARK 465 ARG B 284 REMARK 465 LEU B 285 REMARK 465 ALA B 286 REMARK 465 TYR B 287 REMARK 465 MET B 288 REMARK 465 THR B 289 REMARK 465 ASP B 290 REMARK 465 GLU B 291 REMARK 465 ALA B 292 REMARK 465 VAL B 293 REMARK 465 GLU B 294 REMARK 465 GLY B 295 REMARK 465 ARG B 296 REMARK 465 ASP B 297 REMARK 465 ALA B 298 REMARK 465 PHE B 299 REMARK 465 LEU B 300 REMARK 465 GLN B 301 REMARK 465 LYS B 302 REMARK 465 ARG B 303 REMARK 465 PRO B 304 REMARK 465 PRO B 305 REMARK 465 ASP B 306 REMARK 465 TRP B 307 REMARK 465 SER B 308 REMARK 465 PRO B 309 REMARK 465 PHE B 310 REMARK 465 PRO B 311 REMARK 465 ARG B 312 REMARK 465 TYR B 313 REMARK 465 PHE B 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 16 N CA CB OG REMARK 470 ASP A 17 CB CG OD1 OD2 REMARK 470 ARG A 58 CZ NH1 NH2 REMARK 470 LYS A 95 CE NZ REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 133 N REMARK 470 ARG A 141 NE CZ NH1 NH2 REMARK 470 GLU A 238 OE1 OE2 REMARK 470 VAL A 273 CA C O CB CG1 CG2 REMARK 470 ASP B 17 CG OD1 OD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 26 CD NE CZ NH1 NH2 REMARK 470 ASP B 32 OD1 OD2 REMARK 470 ARG B 58 NE CZ NH1 NH2 REMARK 470 LYS B 95 CD CE NZ REMARK 470 ASP B 106 O REMARK 470 GLN B 107 CA C O CB CG CD OE1 REMARK 470 GLN B 107 NE2 REMARK 470 LYS B 182 CE NZ REMARK 470 GLN B 183 CD OE1 NE2 REMARK 470 ASP B 185 CA C O CB CG OD1 OD2 REMARK 470 GLY B 196 N CA REMARK 470 SER B 197 CB OG REMARK 470 ARG B 202 NE CZ NH1 NH2 REMARK 470 GLU B 238 OE1 OE2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 147 37.59 -79.53 REMARK 500 LEU A 272 -96.58 -115.49 REMARK 500 THR B 184 -160.72 49.00 REMARK 500 THR B 184 -115.28 -93.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI MENB IN COMPLEX WITH REMARK 900 SUBSTRATE ANALOGUE, OSB-NCOA REMARK 900 RELATED ID: 3T89 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI MENB REMARK 900 RELATED ID: 3T8A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MENB IN COMPLEX REMARK 900 WITH SUBSTRATE ANALOGUE, OSB-NCOA DBREF 3T8B A 1 314 UNP O06414 MENB_MYCTU 1 314 DBREF 3T8B B 1 314 UNP O06414 MENB_MYCTU 1 314 SEQADV 3T8B MET A -19 UNP O06414 EXPRESSION TAG SEQADV 3T8B GLY A -18 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER A -17 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER A -16 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A -15 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A -14 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A -13 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A -12 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A -11 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A -10 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER A -9 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER A -8 UNP O06414 EXPRESSION TAG SEQADV 3T8B GLY A -7 UNP O06414 EXPRESSION TAG SEQADV 3T8B LEU A -6 UNP O06414 EXPRESSION TAG SEQADV 3T8B VAL A -5 UNP O06414 EXPRESSION TAG SEQADV 3T8B PRO A -4 UNP O06414 EXPRESSION TAG SEQADV 3T8B ARG A -3 UNP O06414 EXPRESSION TAG SEQADV 3T8B GLY A -2 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER A -1 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS A 0 UNP O06414 EXPRESSION TAG SEQADV 3T8B MET B -19 UNP O06414 EXPRESSION TAG SEQADV 3T8B GLY B -18 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER B -17 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER B -16 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B -15 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B -14 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B -13 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B -12 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B -11 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B -10 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER B -9 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER B -8 UNP O06414 EXPRESSION TAG SEQADV 3T8B GLY B -7 UNP O06414 EXPRESSION TAG SEQADV 3T8B LEU B -6 UNP O06414 EXPRESSION TAG SEQADV 3T8B VAL B -5 UNP O06414 EXPRESSION TAG SEQADV 3T8B PRO B -4 UNP O06414 EXPRESSION TAG SEQADV 3T8B ARG B -3 UNP O06414 EXPRESSION TAG SEQADV 3T8B GLY B -2 UNP O06414 EXPRESSION TAG SEQADV 3T8B SER B -1 UNP O06414 EXPRESSION TAG SEQADV 3T8B HIS B 0 UNP O06414 EXPRESSION TAG SEQRES 1 A 334 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 334 LEU VAL PRO ARG GLY SER HIS MET VAL ALA PRO ALA GLY SEQRES 3 A 334 GLU GLN GLY ARG SER SER THR ALA LEU SER ASP ASN PRO SEQRES 4 A 334 PHE ASP ALA LYS ALA TRP ARG LEU VAL ASP GLY PHE ASP SEQRES 5 A 334 ASP LEU THR ASP ILE THR TYR HIS ARG HIS VAL ASP ASP SEQRES 6 A 334 ALA THR VAL ARG VAL ALA PHE ASN ARG PRO GLU VAL ARG SEQRES 7 A 334 ASN ALA PHE ARG PRO HIS THR VAL ASP GLU LEU TYR ARG SEQRES 8 A 334 VAL LEU ASP HIS ALA ARG MET SER PRO ASP VAL GLY VAL SEQRES 9 A 334 VAL LEU LEU THR GLY ASN GLY PRO SER PRO LYS ASP GLY SEQRES 10 A 334 GLY TRP ALA PHE CYS SER GLY GLY ASP GLN ARG ILE ARG SEQRES 11 A 334 GLY ARG SER GLY TYR GLN TYR ALA SER GLY ASP THR ALA SEQRES 12 A 334 ASP THR VAL ASP VAL ALA ARG ALA GLY ARG LEU HIS ILE SEQRES 13 A 334 LEU GLU VAL GLN ARG LEU ILE ARG PHE MET PRO LYS VAL SEQRES 14 A 334 VAL ILE CYS LEU VAL ASN GLY TRP ALA ALA GLY GLY GLY SEQRES 15 A 334 HIS SER LEU HIS VAL VAL CYS ASP LEU THR LEU ALA SER SEQRES 16 A 334 ARG GLU TYR ALA ARG PHE LYS GLN THR ASP ALA ASP VAL SEQRES 17 A 334 GLY SER PHE ASP GLY GLY TYR GLY SER ALA TYR LEU ALA SEQRES 18 A 334 ARG GLN VAL GLY GLN LYS PHE ALA ARG GLU ILE PHE PHE SEQRES 19 A 334 LEU GLY ARG THR TYR THR ALA GLU GLN MET HIS GLN MET SEQRES 20 A 334 GLY ALA VAL ASN ALA VAL ALA GLU HIS ALA GLU LEU GLU SEQRES 21 A 334 THR VAL GLY LEU GLN TRP ALA ALA GLU ILE ASN ALA LYS SEQRES 22 A 334 SER PRO GLN ALA GLN ARG MET LEU LYS PHE ALA PHE ASN SEQRES 23 A 334 LEU LEU ASP ASP GLY LEU VAL GLY GLN GLN LEU PHE ALA SEQRES 24 A 334 GLY GLU ALA THR ARG LEU ALA TYR MET THR ASP GLU ALA SEQRES 25 A 334 VAL GLU GLY ARG ASP ALA PHE LEU GLN LYS ARG PRO PRO SEQRES 26 A 334 ASP TRP SER PRO PHE PRO ARG TYR PHE SEQRES 1 B 334 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 334 LEU VAL PRO ARG GLY SER HIS MET VAL ALA PRO ALA GLY SEQRES 3 B 334 GLU GLN GLY ARG SER SER THR ALA LEU SER ASP ASN PRO SEQRES 4 B 334 PHE ASP ALA LYS ALA TRP ARG LEU VAL ASP GLY PHE ASP SEQRES 5 B 334 ASP LEU THR ASP ILE THR TYR HIS ARG HIS VAL ASP ASP SEQRES 6 B 334 ALA THR VAL ARG VAL ALA PHE ASN ARG PRO GLU VAL ARG SEQRES 7 B 334 ASN ALA PHE ARG PRO HIS THR VAL ASP GLU LEU TYR ARG SEQRES 8 B 334 VAL LEU ASP HIS ALA ARG MET SER PRO ASP VAL GLY VAL SEQRES 9 B 334 VAL LEU LEU THR GLY ASN GLY PRO SER PRO LYS ASP GLY SEQRES 10 B 334 GLY TRP ALA PHE CYS SER GLY GLY ASP GLN ARG ILE ARG SEQRES 11 B 334 GLY ARG SER GLY TYR GLN TYR ALA SER GLY ASP THR ALA SEQRES 12 B 334 ASP THR VAL ASP VAL ALA ARG ALA GLY ARG LEU HIS ILE SEQRES 13 B 334 LEU GLU VAL GLN ARG LEU ILE ARG PHE MET PRO LYS VAL SEQRES 14 B 334 VAL ILE CYS LEU VAL ASN GLY TRP ALA ALA GLY GLY GLY SEQRES 15 B 334 HIS SER LEU HIS VAL VAL CYS ASP LEU THR LEU ALA SER SEQRES 16 B 334 ARG GLU TYR ALA ARG PHE LYS GLN THR ASP ALA ASP VAL SEQRES 17 B 334 GLY SER PHE ASP GLY GLY TYR GLY SER ALA TYR LEU ALA SEQRES 18 B 334 ARG GLN VAL GLY GLN LYS PHE ALA ARG GLU ILE PHE PHE SEQRES 19 B 334 LEU GLY ARG THR TYR THR ALA GLU GLN MET HIS GLN MET SEQRES 20 B 334 GLY ALA VAL ASN ALA VAL ALA GLU HIS ALA GLU LEU GLU SEQRES 21 B 334 THR VAL GLY LEU GLN TRP ALA ALA GLU ILE ASN ALA LYS SEQRES 22 B 334 SER PRO GLN ALA GLN ARG MET LEU LYS PHE ALA PHE ASN SEQRES 23 B 334 LEU LEU ASP ASP GLY LEU VAL GLY GLN GLN LEU PHE ALA SEQRES 24 B 334 GLY GLU ALA THR ARG LEU ALA TYR MET THR ASP GLU ALA SEQRES 25 B 334 VAL GLU GLY ARG ASP ALA PHE LEU GLN LYS ARG PRO PRO SEQRES 26 B 334 ASP TRP SER PRO PHE PRO ARG TYR PHE HET GOL A 315 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *280(H2 O) HELIX 1 1 ASP A 21 LYS A 23 5 3 HELIX 2 2 ARG A 54 ARG A 58 5 5 HELIX 3 3 ARG A 62 SER A 79 1 18 HELIX 4 4 HIS A 135 MET A 146 1 12 HELIX 5 5 GLY A 160 CYS A 169 1 10 HELIX 6 6 GLY A 196 GLY A 216 1 21 HELIX 7 7 ALA A 221 GLY A 228 1 8 HELIX 8 8 GLU A 235 ALA A 237 5 3 HELIX 9 9 GLU A 238 ALA A 252 1 15 HELIX 10 10 SER A 254 LEU A 268 1 15 HELIX 11 11 ASP B 21 LYS B 23 5 3 HELIX 12 12 ARG B 54 ARG B 58 5 5 HELIX 13 13 ARG B 62 MET B 78 1 17 HELIX 14 14 HIS B 135 MET B 146 1 12 HELIX 15 15 GLY B 160 CYS B 169 1 10 HELIX 16 16 SER B 197 GLY B 205 1 9 HELIX 17 17 GLY B 205 GLY B 216 1 12 HELIX 18 18 THR B 220 GLY B 228 1 9 HELIX 19 19 GLU B 235 ALA B 237 5 3 HELIX 20 20 GLU B 238 SER B 254 1 17 SHEET 1 A 7 TRP A 25 LEU A 27 0 SHEET 2 A 7 ILE A 37 HIS A 42 -1 O ARG A 41 N ARG A 26 SHEET 3 A 7 THR A 47 PHE A 52 -1 O ARG A 49 N HIS A 40 SHEET 4 A 7 VAL A 84 GLY A 89 1 O LEU A 86 N VAL A 50 SHEET 5 A 7 VAL A 149 VAL A 154 1 O ILE A 151 N VAL A 85 SHEET 6 A 7 LEU A 171 SER A 175 1 O LEU A 171 N CYS A 152 SHEET 7 A 7 ALA A 232 ALA A 234 1 O ALA A 234 N ALA A 174 SHEET 1 B 4 ALA A 100 CYS A 102 0 SHEET 2 B 4 TRP A 157 ALA A 159 1 O TRP A 157 N PHE A 101 SHEET 3 B 4 ARG A 180 LYS A 182 1 O ARG A 180 N ALA A 158 SHEET 4 B 4 THR A 218 THR A 220 -1 O TYR A 219 N PHE A 181 SHEET 1 C 7 TRP B 25 LEU B 27 0 SHEET 2 C 7 ILE B 37 HIS B 42 -1 O ARG B 41 N ARG B 26 SHEET 3 C 7 THR B 47 PHE B 52 -1 O ARG B 49 N HIS B 40 SHEET 4 C 7 VAL B 84 GLY B 89 1 O LEU B 86 N VAL B 50 SHEET 5 C 7 VAL B 149 VAL B 154 1 O LEU B 153 N LEU B 87 SHEET 6 C 7 LEU B 171 SER B 175 1 O LEU B 171 N CYS B 152 SHEET 7 C 7 ALA B 232 ALA B 234 1 O ALA B 234 N ALA B 174 SHEET 1 D 3 ALA B 100 CYS B 102 0 SHEET 2 D 3 TRP B 157 ALA B 159 1 O TRP B 157 N PHE B 101 SHEET 3 D 3 ARG B 180 LYS B 182 1 O ARG B 180 N ALA B 158 CISPEP 1 GLY A 91 PRO A 92 0 1.30 CISPEP 2 GLY B 91 PRO B 92 0 -2.72 SITE 1 AC1 8 GLY A 83 PRO A 147 LYS A 148 VAL A 149 SITE 2 AC1 8 PRO A 255 ARG A 259 HOH A 333 HOH A 387 CRYST1 132.233 132.233 71.139 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007562 0.004366 0.000000 0.00000 SCALE2 0.000000 0.008732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014057 0.00000