HEADER PROTEIN BINDING 22-JUL-11 3T1W TITLE STRUCTURE OF THE FOUR-DOMAIN FRAGMENT FN7B89 OF ONCOFETAL FIBRONECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOUR-DOMAIN FIBRONECTIN FRAGMENT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 920-1286; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DKFZP686O12165, NP_997647; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK75-FN7B89-HIS KEYWDS HUMAN FIBRONECTIN, FN TYPE-III DOMAIN, ONCOFETAL SPLICE VARIANT, KEYWDS 2 EXTRA-DOMAIN B, EIIIB, ED-B, ANGIOGENESIS, INTEGRIN, FIBRONECTIN, KEYWDS 3 EXTRACELLULAR MATRIX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHIEFNER,A.SKERRA REVDAT 4 08-NOV-17 3T1W 1 REMARK REVDAT 3 26-JUN-13 3T1W 1 JRNL REVDAT 2 23-MAY-12 3T1W 1 JRNL REVDAT 1 21-MAR-12 3T1W 0 JRNL AUTH A.SCHIEFNER,M.GEBAUER,A.SKERRA JRNL TITL EXTRA-DOMAIN B IN ONCOFETAL FIBRONECTIN STRUCTURALLY JRNL TITL 2 PROMOTES FIBRILLAR HEAD-TO-TAIL DIMERIZATION OF JRNL TITL 3 EXTRACELLULAR MATRIX PROTEIN. JRNL REF J.BIOL.CHEM. V. 287 17578 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22442152 JRNL DOI 10.1074/JBC.M111.303131 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.98000 REMARK 3 B22 (A**2) : 2.18000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2890 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3975 ; 1.150 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 6.297 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;38.466 ;24.508 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;15.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2216 ; 0.005 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 0.419 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3056 ; 0.828 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1042 ; 1.628 ; 3.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 919 ; 2.935 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1173 A 1264 REMARK 3 ORIGIN FOR THE GROUP (A): 53.0669 8.5578 35.2632 REMARK 3 T TENSOR REMARK 3 T11: 0.3260 T22: 0.5063 REMARK 3 T33: 0.2695 T12: -0.1075 REMARK 3 T13: 0.0676 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 5.1940 L22: 2.7619 REMARK 3 L33: 11.6781 L12: 0.5815 REMARK 3 L13: 2.3306 L23: 0.2403 REMARK 3 S TENSOR REMARK 3 S11: 0.1716 S12: -0.8454 S13: 0.2132 REMARK 3 S21: -0.0167 S22: 0.0506 S23: -0.3002 REMARK 3 S31: -0.2436 S32: 0.7075 S33: -0.2223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1265 A 1446 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0056 0.4204 12.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.5884 T22: 1.0867 REMARK 3 T33: 0.5613 T12: 0.2451 REMARK 3 T13: -0.1212 T23: 0.1870 REMARK 3 L TENSOR REMARK 3 L11: 24.5110 L22: 0.4068 REMARK 3 L33: 1.3983 L12: -3.0849 REMARK 3 L13: 5.7138 L23: -0.7352 REMARK 3 S TENSOR REMARK 3 S11: -0.4224 S12: -1.3156 S13: -0.5512 REMARK 3 S21: 0.1183 S22: 0.3598 S23: 0.0443 REMARK 3 S31: -0.2928 S32: -0.3192 S33: 0.0626 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1447 A 1540 REMARK 3 ORIGIN FOR THE GROUP (A): -46.6418 14.7677 -5.7583 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.0385 REMARK 3 T33: 0.1741 T12: 0.0090 REMARK 3 T13: 0.0227 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.0730 L22: 2.1901 REMARK 3 L33: 3.9889 L12: -0.0009 REMARK 3 L13: 1.3010 L23: 0.3076 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.2578 S13: 0.0211 REMARK 3 S21: -0.2066 S22: -0.0293 S23: -0.1797 REMARK 3 S31: 0.0311 S32: 0.2927 S33: 0.0183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42500 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26 %(W/V) PEG3350, 0.1 M TRIS-HCL, 0.2 REMARK 280 M NACL, 5 %(V/V) ISOPROPANOL, PH 9.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 105.99000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.55750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 105.99000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.55750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1172 REMARK 465 HIS A 1541 REMARK 465 HIS A 1542 REMARK 465 HIS A 1543 REMARK 465 HIS A 1544 REMARK 465 HIS A 1545 REMARK 465 HIS A 1546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1382 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1252 -95.78 49.24 REMARK 500 THR A1279 -154.59 -101.37 REMARK 500 SER A1281 2.26 -154.98 REMARK 500 ASN A1291 37.18 -77.88 REMARK 500 PRO A1310 63.80 -61.30 REMARK 500 ASP A1363 77.55 60.02 REMARK 500 PRO A1382 -123.48 -5.34 REMARK 500 ASP A1385 54.83 -66.42 REMARK 500 ASN A1398 58.78 -155.93 REMARK 500 GLN A1435 -21.95 71.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FNF RELATED DB: PDB REMARK 900 RELATED ID: 2GEE RELATED DB: PDB REMARK 900 RELATED ID: 2FNB RELATED DB: PDB DBREF 3T1W A 1173 1539 UNP Q6MZM7 Q6MZM7_HUMAN 920 1286 SEQADV 3T1W MET A 1172 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W ALA A 1540 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W HIS A 1541 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W HIS A 1542 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W HIS A 1543 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W HIS A 1544 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W HIS A 1545 UNP Q6MZM7 EXPRESSION TAG SEQADV 3T1W HIS A 1546 UNP Q6MZM7 EXPRESSION TAG SEQRES 1 A 375 MET PRO LEU SER PRO PRO THR ASN LEU HIS LEU GLU ALA SEQRES 2 A 375 ASN PRO ASP THR GLY VAL LEU THR VAL SER TRP GLU ARG SEQRES 3 A 375 SER THR THR PRO ASP ILE THR GLY TYR ARG ILE THR THR SEQRES 4 A 375 THR PRO THR ASN GLY GLN GLN GLY ASN SER LEU GLU GLU SEQRES 5 A 375 VAL VAL HIS ALA ASP GLN SER SER CYS THR PHE ASP ASN SEQRES 6 A 375 LEU SER PRO GLY LEU GLU TYR ASN VAL SER VAL TYR THR SEQRES 7 A 375 VAL LYS ASP ASP LYS GLU SER VAL PRO ILE SER ASP THR SEQRES 8 A 375 ILE ILE PRO GLU VAL PRO GLN LEU THR ASP LEU SER PHE SEQRES 9 A 375 VAL ASP ILE THR ASP SER SER ILE GLY LEU ARG TRP THR SEQRES 10 A 375 PRO LEU ASN SER SER THR ILE ILE GLY TYR ARG ILE THR SEQRES 11 A 375 VAL VAL ALA ALA GLY GLU GLY ILE PRO ILE PHE GLU ASP SEQRES 12 A 375 PHE VAL ASP SER SER VAL GLY TYR TYR THR VAL THR GLY SEQRES 13 A 375 LEU GLU PRO GLY ILE ASP TYR ASP ILE SER VAL ILE THR SEQRES 14 A 375 LEU ILE ASN GLY GLY GLU SER ALA PRO THR THR LEU THR SEQRES 15 A 375 GLN GLN THR ALA VAL PRO PRO PRO THR ASP LEU ARG PHE SEQRES 16 A 375 THR ASN ILE GLY PRO ASP THR MET ARG VAL THR TRP ALA SEQRES 17 A 375 PRO PRO PRO SER ILE ASP LEU THR ASN PHE LEU VAL ARG SEQRES 18 A 375 TYR SER PRO VAL LYS ASN GLU GLU ASP VAL ALA GLU LEU SEQRES 19 A 375 SER ILE SER PRO SER ASP ASN ALA VAL VAL LEU THR ASN SEQRES 20 A 375 LEU LEU PRO GLY THR GLU TYR VAL VAL SER VAL SER SER SEQRES 21 A 375 VAL TYR GLU GLN HIS GLU SER THR PRO LEU ARG GLY ARG SEQRES 22 A 375 GLN LYS THR GLY LEU ASP SER PRO THR GLY ILE ASP PHE SEQRES 23 A 375 SER ASP ILE THR ALA ASN SER PHE THR VAL HIS TRP ILE SEQRES 24 A 375 ALA PRO ARG ALA THR ILE THR GLY TYR ARG ILE ARG HIS SEQRES 25 A 375 HIS PRO GLU HIS PHE SER GLY ARG PRO ARG GLU ASP ARG SEQRES 26 A 375 VAL PRO HIS SER ARG ASN SER ILE THR LEU THR ASN LEU SEQRES 27 A 375 THR PRO GLY THR GLU TYR VAL VAL SER ILE VAL ALA LEU SEQRES 28 A 375 ASN GLY ARG GLU GLU SER PRO LEU LEU ILE GLY GLN GLN SEQRES 29 A 375 SER THR VAL SER ALA HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *118(H2 O) HELIX 1 1 LYS A 1397 GLU A 1399 5 3 SHEET 1 A 3 THR A1178 ASN A1185 0 SHEET 2 A 3 VAL A1190 GLU A1196 -1 O THR A1192 N GLU A1183 SHEET 3 A 3 SER A1231 PHE A1234 -1 O PHE A1234 N LEU A1191 SHEET 1 B 4 LEU A1221 HIS A1226 0 SHEET 2 B 4 GLY A1205 PRO A1212 -1 N ILE A1208 O GLU A1223 SHEET 3 B 4 TYR A1243 LYS A1251 -1 O ASN A1244 N THR A1211 SHEET 4 B 4 LYS A1254 GLU A1255 -1 O LYS A1254 N LYS A1251 SHEET 1 C 4 LEU A1221 HIS A1226 0 SHEET 2 C 4 GLY A1205 PRO A1212 -1 N ILE A1208 O GLU A1223 SHEET 3 C 4 TYR A1243 LYS A1251 -1 O ASN A1244 N THR A1211 SHEET 4 C 4 ILE A1259 ILE A1263 -1 O ASP A1261 N VAL A1245 SHEET 1 D 3 SER A1274 VAL A1276 0 SHEET 2 D 3 SER A1282 ARG A1286 -1 O GLY A1284 N VAL A1276 SHEET 3 D 3 TYR A1322 THR A1326 -1 O TYR A1323 N LEU A1285 SHEET 1 E 4 PHE A1312 VAL A1316 0 SHEET 2 E 4 ILE A1295 ALA A1304 -1 N ILE A1300 O ASP A1314 SHEET 3 E 4 ASP A1333 ILE A1342 -1 O ASP A1335 N VAL A1303 SHEET 4 E 4 GLY A1345 GLU A1346 -1 O GLY A1345 N ILE A1342 SHEET 1 F 4 PHE A1312 VAL A1316 0 SHEET 2 F 4 ILE A1295 ALA A1304 -1 N ILE A1300 O ASP A1314 SHEET 3 F 4 ASP A1333 ILE A1342 -1 O ASP A1335 N VAL A1303 SHEET 4 F 4 THR A1350 GLN A1355 -1 O GLN A1354 N TYR A1334 SHEET 1 G 3 THR A1362 THR A1367 0 SHEET 2 G 3 MET A1374 ALA A1379 -1 O ARG A1375 N THR A1367 SHEET 3 G 3 ALA A1413 LEU A1416 -1 O VAL A1414 N VAL A1376 SHEET 1 H 4 ALA A1403 ILE A1407 0 SHEET 2 H 4 ASN A1388 PRO A1395 -1 N PHE A1389 O ILE A1407 SHEET 3 H 4 GLU A1424 TYR A1433 -1 O SER A1430 N LEU A1390 SHEET 4 H 4 HIS A1436 GLU A1437 -1 O HIS A1436 N TYR A1433 SHEET 1 I 4 ALA A1403 ILE A1407 0 SHEET 2 I 4 ASN A1388 PRO A1395 -1 N PHE A1389 O ILE A1407 SHEET 3 I 4 GLU A1424 TYR A1433 -1 O SER A1430 N LEU A1390 SHEET 4 I 4 LEU A1441 LYS A1446 -1 O GLN A1445 N TYR A1425 SHEET 1 J 3 THR A1453 SER A1458 0 SHEET 2 J 3 PHE A1465 ILE A1470 -1 O ILE A1470 N THR A1453 SHEET 3 J 3 SER A1503 LEU A1506 -1 O ILE A1504 N VAL A1467 SHEET 1 K 4 ARG A1493 PRO A1498 0 SHEET 2 K 4 GLY A1478 PRO A1485 -1 N TYR A1479 O VAL A1497 SHEET 3 K 4 GLU A1514 ASN A1523 -1 O LEU A1522 N GLY A1478 SHEET 4 K 4 GLU A1526 GLU A1527 -1 O GLU A1526 N ASN A1523 SHEET 1 L 4 ARG A1493 PRO A1498 0 SHEET 2 L 4 GLY A1478 PRO A1485 -1 N TYR A1479 O VAL A1497 SHEET 3 L 4 GLU A1514 ASN A1523 -1 O LEU A1522 N GLY A1478 SHEET 4 L 4 LEU A1531 SER A1536 -1 O GLY A1533 N VAL A1517 CRYST1 211.980 29.115 82.241 90.00 111.42 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004717 0.000000 0.001850 0.00000 SCALE2 0.000000 0.034347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013061 0.00000