HEADER ISOMERASE 07-OCT-10 3P4X TITLE HELICASE DOMAIN OF REVERSE GYRASE FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE GYRASE HELICASE-LIKE DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOPOISOMERASE, DNA SUPERCOILING, ARCHAEA, HELICASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 4 08-NOV-17 3P4X 1 REMARK REVDAT 3 13-JUL-11 3P4X 1 JRNL REVDAT 2 22-JUN-11 3P4X 1 JRNL REVDAT 1 15-JUN-11 3P4X 0 JRNL AUTH Y.DEL TORO DUANY,D.KLOSTERMEIER,M.G.RUDOLPH JRNL TITL THE CONFORMATIONAL FLEXIBILITY OF THE HELICASE-LIKE DOMAIN JRNL TITL 2 FROM THERMOTOGA MARITIMA REVERSE GYRASE IS RESTRICTED BY THE JRNL TITL 3 TOPOISOMERASE DOMAIN. JRNL REF BIOCHEMISTRY V. 50 5816 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21627332 JRNL DOI 10.1021/BI200236A REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 29793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0472 - 5.3584 0.95 2971 151 0.1624 0.2384 REMARK 3 2 5.3584 - 4.2536 0.97 2872 176 0.1292 0.1742 REMARK 3 3 4.2536 - 3.7160 0.97 2839 152 0.1524 0.2321 REMARK 3 4 3.7160 - 3.3763 0.96 2838 146 0.1745 0.2665 REMARK 3 5 3.3763 - 3.1343 0.95 2753 135 0.2105 0.2747 REMARK 3 6 3.1343 - 2.9496 0.91 2642 136 0.2284 0.3113 REMARK 3 7 2.9496 - 2.8018 0.87 2500 136 0.2318 0.3040 REMARK 3 8 2.8018 - 2.6799 0.80 2317 138 0.2590 0.3391 REMARK 3 9 2.6799 - 2.5767 0.80 2289 120 0.2729 0.3773 REMARK 3 10 2.5767 - 2.4878 0.76 2208 123 0.3111 0.3577 REMARK 3 11 2.4878 - 2.4100 0.71 2042 109 0.3273 0.4145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.28 REMARK 3 B_SOL : 40.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.88460 REMARK 3 B22 (A**2) : 0.42480 REMARK 3 B33 (A**2) : -4.30940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6807 REMARK 3 ANGLE : 1.144 9143 REMARK 3 CHIRALITY : 0.076 1002 REMARK 3 PLANARITY : 0.004 1146 REMARK 3 DIHEDRAL : 18.436 2576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 59:285) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7353 -41.2224 14.3295 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.1564 REMARK 3 T33: 0.1734 T12: 0.0105 REMARK 3 T13: -0.0123 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 2.0462 L22: 1.2478 REMARK 3 L33: 5.2776 L12: 0.2208 REMARK 3 L13: 0.2394 L23: -0.9363 REMARK 3 S TENSOR REMARK 3 S11: 0.2082 S12: 0.0960 S13: 0.0963 REMARK 3 S21: -0.1898 S22: 0.0169 S23: -0.0158 REMARK 3 S31: 0.5459 S32: -0.1482 S33: -0.1653 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 286:532) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9970 -50.9829 43.0815 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.3497 REMARK 3 T33: 0.0482 T12: -0.0865 REMARK 3 T13: -0.0230 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.2703 L22: 0.6351 REMARK 3 L33: 5.6821 L12: -0.0459 REMARK 3 L13: -1.5423 L23: 1.7906 REMARK 3 S TENSOR REMARK 3 S11: -0.1652 S12: 0.2671 S13: 0.0847 REMARK 3 S21: -0.3254 S22: 0.0724 S23: 0.0420 REMARK 3 S31: 0.2420 S32: -0.2946 S33: 0.0546 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 58:285) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9940 -74.8843 36.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.2621 T22: 0.2341 REMARK 3 T33: 0.1376 T12: 0.0231 REMARK 3 T13: 0.0004 T23: -0.0606 REMARK 3 L TENSOR REMARK 3 L11: 2.9891 L22: 1.6877 REMARK 3 L33: 1.3901 L12: 0.0581 REMARK 3 L13: 1.9448 L23: 0.8796 REMARK 3 S TENSOR REMARK 3 S11: -0.3597 S12: -0.2410 S13: 0.1414 REMARK 3 S21: -0.1361 S22: 0.3048 S23: -0.1568 REMARK 3 S31: -0.2535 S32: -0.1605 S33: 0.0502 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 286:538) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0040 -62.5543 7.4907 REMARK 3 T TENSOR REMARK 3 T11: 0.2278 T22: 0.2210 REMARK 3 T33: 0.0531 T12: 0.0201 REMARK 3 T13: -0.0111 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.8047 L22: 0.6503 REMARK 3 L33: 1.8507 L12: 0.0604 REMARK 3 L13: 0.9649 L23: 0.3715 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0328 S13: 0.0092 REMARK 3 S21: 0.1337 S22: 0.0513 S23: -0.0273 REMARK 3 S31: 0.2805 S32: -0.1227 S33: -0.0612 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 800) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3875 -50.3313 -0.5041 REMARK 3 T TENSOR REMARK 3 T11: 1.7358 T22: 1.4791 REMARK 3 T33: 0.4393 T12: 0.3351 REMARK 3 T13: -0.1510 T23: -0.0678 REMARK 3 L TENSOR REMARK 3 L11: 1.1858 L22: 0.1563 REMARK 3 L33: 0.6604 L12: -0.4306 REMARK 3 L13: -0.8853 L23: 0.3191 REMARK 3 S TENSOR REMARK 3 S11: 0.2460 S12: 0.3890 S13: 0.1539 REMARK 3 S21: 0.1648 S22: 0.3301 S23: 0.0159 REMARK 3 S31: 0.3184 S32: 0.2752 S33: -0.3787 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (VERSION MAY 10 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 129.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : 0.63500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OIY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M MG-FORMIATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.62950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.86300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.61550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.86300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.62950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.61550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 365 REMARK 465 GLY A 366 REMARK 465 LYS A 367 REMARK 465 LEU A 368 REMARK 465 THR A 369 REMARK 465 ARG A 370 REMARK 465 GLY A 371 REMARK 465 VAL A 372 REMARK 465 LEU A 536 REMARK 465 THR A 537 REMARK 465 ASP A 538 REMARK 465 THR A 539 REMARK 465 SER A 540 REMARK 465 ARG A 541 REMARK 465 THR B 539 REMARK 465 SER B 540 REMARK 465 ARG B 541 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ASP A 373 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 364 CD1 TYR A 364 CE1 0.102 REMARK 500 TYR A 364 CE2 TYR A 364 CD2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 100 147.27 -177.43 REMARK 500 SER A 157 32.75 -85.38 REMARK 500 LYS A 249 78.97 -117.73 REMARK 500 ASN A 275 83.02 -64.10 REMARK 500 ARG A 309 -55.80 72.83 REMARK 500 PHE A 343 -71.74 -46.41 REMARK 500 TYR B 64 -70.87 -49.68 REMARK 500 ASP B 174 61.59 -102.82 REMARK 500 SER B 193 -5.15 -59.79 REMARK 500 ARG B 309 -56.17 75.20 REMARK 500 LEU B 374 65.70 -153.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 799 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 107 OG1 REMARK 620 2 ADP A 800 O1B 84.6 REMARK 620 3 HOH A 35 O 156.1 79.7 REMARK 620 4 HOH A 33 O 98.5 76.8 60.4 REMARK 620 5 HOH A 34 O 78.6 97.9 121.3 174.2 REMARK 620 6 HOH A 32 O 105.5 169.4 91.6 104.4 81.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 799 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OIY RELATED DB: PDB REMARK 900 RELATED ID: 3P4Y RELATED DB: PDB DBREF 3P4X A 59 541 PDB 3P4X 3P4X 59 541 DBREF 3P4X B 59 541 PDB 3P4X 3P4X 59 541 SEQRES 1 A 413 GLU PHE TRP ASN GLU TYR GLU ASP PHE ARG SER PHE PHE SEQRES 2 A 413 LYS LYS LYS PHE GLY LYS ASP LEU THR GLY TYR GLN ARG SEQRES 3 A 413 LEU TRP ALA LYS ARG ILE VAL GLN GLY LYS SER PHE THR SEQRES 4 A 413 MET VAL ALA PRO THR GLY VAL GLY LYS THR THR PHE GLY SEQRES 5 A 413 MET MET THR ALA LEU TRP LEU ALA ARG LYS GLY LYS LYS SEQRES 6 A 413 SER ALA LEU VAL PHE PRO THR VAL THR LEU VAL LYS GLN SEQRES 7 A 413 THR LEU GLU ARG LEU GLN LYS LEU ALA ASP GLU LYS VAL SEQRES 8 A 413 LYS ILE PHE GLY PHE TYR SER SER MET LYS LYS GLU GLU SEQRES 9 A 413 LYS GLU LYS PHE GLU LYS SER PHE GLU GLU ASP ASP TYR SEQRES 10 A 413 HIS ILE LEU VAL PHE SER THR GLN PHE VAL SER LYS ASN SEQRES 11 A 413 ARG GLU LYS LEU SER GLN LYS ARG PHE ASP PHE VAL PHE SEQRES 12 A 413 VAL ASP ASP VAL ASP ALA VAL LEU LYS ALA SER ARG ASN SEQRES 13 A 413 ILE ASP THR LEU LEU MET MET VAL GLY ILE PRO GLU GLU SEQRES 14 A 413 ILE ILE ARG LYS ALA PHE SER THR ILE LYS GLN GLY LYS SEQRES 15 A 413 ILE TYR GLU ARG PRO LYS ASN LEU LYS PRO GLY ILE LEU SEQRES 16 A 413 VAL VAL SER SER ALA THR ALA LYS PRO ARG GLY ILE ARG SEQRES 17 A 413 PRO LEU LEU PHE ARG ASP LEU LEU ASN PHE THR VAL GLY SEQRES 18 A 413 ARG LEU VAL SER VAL ALA ARG ASN ILE THR HIS VAL ARG SEQRES 19 A 413 ILE SER SER ARG SER LYS GLU LYS LEU VAL GLU LEU LEU SEQRES 20 A 413 GLU ILE PHE ARG ASP GLY ILE LEU ILE PHE ALA GLN THR SEQRES 21 A 413 GLU GLU GLU GLY LYS GLU LEU TYR GLU TYR LEU LYS ARG SEQRES 22 A 413 PHE LYS PHE ASN VAL GLY GLU THR TRP SER GLU PHE GLU SEQRES 23 A 413 LYS ASN PHE GLU ASP PHE LYS VAL GLY LYS ILE ASN ILE SEQRES 24 A 413 LEU ILE GLY VAL GLN ALA TYR TYR GLY LYS LEU THR ARG SEQRES 25 A 413 GLY VAL ASP LEU PRO GLU ARG ILE LYS TYR VAL ILE PHE SEQRES 26 A 413 TRP GLY THR PRO SER GLY PRO ASP VAL TYR THR TYR ILE SEQRES 27 A 413 GLN ALA SER GLY ARG SER SER ARG ILE LEU ASN GLY VAL SEQRES 28 A 413 LEU VAL LYS GLY VAL SER VAL ILE PHE GLU GLU ASP GLU SEQRES 29 A 413 GLU ILE PHE GLU SER LEU LYS THR ARG LEU LEU LEU ILE SEQRES 30 A 413 ALA GLU GLU GLU ILE ILE GLU GLU ALA GLU ALA ASN TRP SEQRES 31 A 413 LYS GLU LEU VAL HIS GLU VAL GLU GLU SER ARG ARG ARG SEQRES 32 A 413 SER GLU ARG GLU LEU THR ASP THR SER ARG SEQRES 1 B 413 GLU PHE TRP ASN GLU TYR GLU ASP PHE ARG SER PHE PHE SEQRES 2 B 413 LYS LYS LYS PHE GLY LYS ASP LEU THR GLY TYR GLN ARG SEQRES 3 B 413 LEU TRP ALA LYS ARG ILE VAL GLN GLY LYS SER PHE THR SEQRES 4 B 413 MET VAL ALA PRO THR GLY VAL GLY LYS THR THR PHE GLY SEQRES 5 B 413 MET MET THR ALA LEU TRP LEU ALA ARG LYS GLY LYS LYS SEQRES 6 B 413 SER ALA LEU VAL PHE PRO THR VAL THR LEU VAL LYS GLN SEQRES 7 B 413 THR LEU GLU ARG LEU GLN LYS LEU ALA ASP GLU LYS VAL SEQRES 8 B 413 LYS ILE PHE GLY PHE TYR SER SER MET LYS LYS GLU GLU SEQRES 9 B 413 LYS GLU LYS PHE GLU LYS SER PHE GLU GLU ASP ASP TYR SEQRES 10 B 413 HIS ILE LEU VAL PHE SER THR GLN PHE VAL SER LYS ASN SEQRES 11 B 413 ARG GLU LYS LEU SER GLN LYS ARG PHE ASP PHE VAL PHE SEQRES 12 B 413 VAL ASP ASP VAL ASP ALA VAL LEU LYS ALA SER ARG ASN SEQRES 13 B 413 ILE ASP THR LEU LEU MET MET VAL GLY ILE PRO GLU GLU SEQRES 14 B 413 ILE ILE ARG LYS ALA PHE SER THR ILE LYS GLN GLY LYS SEQRES 15 B 413 ILE TYR GLU ARG PRO LYS ASN LEU LYS PRO GLY ILE LEU SEQRES 16 B 413 VAL VAL SER SER ALA THR ALA LYS PRO ARG GLY ILE ARG SEQRES 17 B 413 PRO LEU LEU PHE ARG ASP LEU LEU ASN PHE THR VAL GLY SEQRES 18 B 413 ARG LEU VAL SER VAL ALA ARG ASN ILE THR HIS VAL ARG SEQRES 19 B 413 ILE SER SER ARG SER LYS GLU LYS LEU VAL GLU LEU LEU SEQRES 20 B 413 GLU ILE PHE ARG ASP GLY ILE LEU ILE PHE ALA GLN THR SEQRES 21 B 413 GLU GLU GLU GLY LYS GLU LEU TYR GLU TYR LEU LYS ARG SEQRES 22 B 413 PHE LYS PHE ASN VAL GLY GLU THR TRP SER GLU PHE GLU SEQRES 23 B 413 LYS ASN PHE GLU ASP PHE LYS VAL GLY LYS ILE ASN ILE SEQRES 24 B 413 LEU ILE GLY VAL GLN ALA TYR TYR GLY LYS LEU THR ARG SEQRES 25 B 413 GLY VAL ASP LEU PRO GLU ARG ILE LYS TYR VAL ILE PHE SEQRES 26 B 413 TRP GLY THR PRO SER GLY PRO ASP VAL TYR THR TYR ILE SEQRES 27 B 413 GLN ALA SER GLY ARG SER SER ARG ILE LEU ASN GLY VAL SEQRES 28 B 413 LEU VAL LYS GLY VAL SER VAL ILE PHE GLU GLU ASP GLU SEQRES 29 B 413 GLU ILE PHE GLU SER LEU LYS THR ARG LEU LEU LEU ILE SEQRES 30 B 413 ALA GLU GLU GLU ILE ILE GLU GLU ALA GLU ALA ASN TRP SEQRES 31 B 413 LYS GLU LEU VAL HIS GLU VAL GLU GLU SER ARG ARG ARG SEQRES 32 B 413 SER GLU ARG GLU LEU THR ASP THR SER ARG HET MG A 799 1 HET ADP A 800 27 HET CL B 1 1 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 CL CL 1- FORMUL 6 HOH *52(H2 O) HELIX 1 1 PHE A 60 GLY A 76 1 17 HELIX 2 2 THR A 80 GLN A 92 1 13 HELIX 3 3 GLY A 105 ALA A 118 1 14 HELIX 4 4 THR A 130 ALA A 145 1 16 HELIX 5 5 LYS A 159 ASP A 173 1 15 HELIX 6 6 THR A 182 ASN A 188 1 7 HELIX 7 7 ASN A 188 SER A 193 1 6 HELIX 8 8 ASP A 204 LEU A 209 1 6 HELIX 9 9 ALA A 211 VAL A 222 1 12 HELIX 10 10 PRO A 225 GLN A 238 1 14 HELIX 11 11 GLY A 264 LEU A 274 1 11 HELIX 12 12 SER A 297 ARG A 309 1 13 HELIX 13 13 THR A 318 PHE A 332 1 15 HELIX 14 14 GLU A 342 GLY A 353 1 12 HELIX 15 15 ASP A 461 ARG A 471 1 11 HELIX 16 16 ASP A 491 ALA A 506 1 16 HELIX 17 17 ALA A 514 ALA A 516 5 3 HELIX 18 18 ASN A 517 GLU A 533 1 17 HELIX 19 19 PHE B 60 GLY B 76 1 17 HELIX 20 20 THR B 80 GLN B 92 1 13 HELIX 21 21 GLY B 105 ARG B 119 1 15 HELIX 22 22 THR B 130 ALA B 145 1 16 HELIX 23 23 LYS B 159 ASP B 173 1 15 HELIX 24 24 THR B 182 ASN B 188 1 7 HELIX 25 25 ASN B 188 SER B 193 1 6 HELIX 26 26 ASP B 206 ALA B 211 1 6 HELIX 27 27 ALA B 211 VAL B 222 1 12 HELIX 28 28 PRO B 225 GLN B 238 1 14 HELIX 29 29 ILE B 265 ASN B 275 1 11 HELIX 30 30 VAL B 278 VAL B 282 5 5 HELIX 31 31 SER B 297 ARG B 309 1 13 HELIX 32 32 THR B 318 PHE B 332 1 15 HELIX 33 33 GLU B 342 GLY B 353 1 12 HELIX 34 34 GLY B 366 GLY B 371 1 6 HELIX 35 35 ASP B 461 GLY B 470 1 10 HELIX 36 36 ARG B 471 SER B 473 5 3 HELIX 37 37 ASP B 491 GLU B 507 1 17 HELIX 38 38 ALA B 514 ALA B 516 5 3 HELIX 39 39 ASN B 517 ASP B 538 1 22 SHEET 1 A 6 PHE A 96 VAL A 99 0 SHEET 2 A 6 ILE A 252 SER A 257 1 O VAL A 255 N MET A 98 SHEET 3 A 6 PHE A 199 VAL A 202 1 N VAL A 202 O VAL A 254 SHEET 4 A 6 SER A 124 PHE A 128 1 N VAL A 127 O PHE A 201 SHEET 5 A 6 ILE A 177 SER A 181 1 O LEU A 178 N LEU A 126 SHEET 6 A 6 ILE A 151 GLY A 153 1 N PHE A 152 O ILE A 177 SHEET 1 B 7 VAL A 336 GLU A 338 0 SHEET 2 B 7 ILE A 357 VAL A 361 1 O ILE A 359 N GLY A 337 SHEET 3 B 7 ILE A 312 ALA A 316 1 N ALA A 316 O GLY A 360 SHEET 4 B 7 TYR A 380 TRP A 384 1 O ILE A 382 N LEU A 313 SHEET 5 B 7 GLY A 483 PHE A 488 1 O VAL A 486 N PHE A 383 SHEET 6 B 7 ILE A 288 ILE A 293 1 N VAL A 291 O ILE A 487 SHEET 7 B 7 ILE A 510 GLU A 512 1 O ILE A 511 N ARG A 292 SHEET 1 C 2 ILE A 475 LEU A 476 0 SHEET 2 C 2 VAL A 479 LEU A 480 -1 O VAL A 479 N LEU A 476 SHEET 1 D 6 PHE B 96 THR B 97 0 SHEET 2 D 6 ILE B 252 VAL B 255 1 O VAL B 255 N PHE B 96 SHEET 3 D 6 PHE B 199 VAL B 202 1 N VAL B 202 O VAL B 254 SHEET 4 D 6 SER B 124 PHE B 128 1 N ALA B 125 O PHE B 201 SHEET 5 D 6 ILE B 177 SER B 181 1 O LEU B 178 N LEU B 126 SHEET 6 D 6 ILE B 151 PHE B 154 1 N PHE B 152 O ILE B 177 SHEET 1 E 7 VAL B 336 GLU B 338 0 SHEET 2 E 7 ILE B 357 VAL B 361 1 O ILE B 359 N GLY B 337 SHEET 3 E 7 ILE B 312 ALA B 316 1 N ILE B 314 O GLY B 360 SHEET 4 E 7 TYR B 380 TRP B 384 1 O ILE B 382 N LEU B 313 SHEET 5 E 7 GLY B 483 PHE B 488 1 O VAL B 486 N PHE B 383 SHEET 6 E 7 ILE B 288 ILE B 293 1 N THR B 289 O SER B 485 SHEET 7 E 7 ILE B 510 GLU B 512 1 O ILE B 511 N HIS B 290 SHEET 1 F 2 ILE B 475 LEU B 476 0 SHEET 2 F 2 VAL B 479 LEU B 480 -1 O VAL B 479 N LEU B 476 LINK OG1 THR A 107 MG MG A 799 1555 1555 2.52 LINK MG MG A 799 O1B ADP A 800 1555 1555 2.59 LINK MG MG A 799 O HOH A 35 1555 1555 2.50 LINK MG MG A 799 O HOH A 33 1555 1555 2.59 LINK MG MG A 799 O HOH A 34 1555 1555 2.62 LINK MG MG A 799 O HOH A 32 1555 1555 2.67 CISPEP 1 GLY A 389 PRO A 460 0 -2.85 CISPEP 2 GLY B 389 PRO B 460 0 -3.02 SITE 1 AC1 6 HOH A 32 HOH A 33 HOH A 34 HOH A 35 SITE 2 AC1 6 THR A 107 ADP A 800 SITE 1 AC2 16 HOH A 34 HOH A 35 PHE A 71 PHE A 75 SITE 2 AC2 16 LYS A 77 ASP A 78 THR A 80 GLN A 83 SITE 3 AC2 16 THR A 102 GLY A 103 VAL A 104 GLY A 105 SITE 4 AC2 16 LYS A 106 THR A 107 THR A 108 MG A 799 SITE 1 AC3 3 GLY B 105 THR B 108 ARG B 140 CRYST1 59.259 111.231 129.726 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007709 0.00000