HEADER VIRAL PROTEIN 26-JUL-10 3O42 TITLE COMPLEX OF AN ALPHA/BETA-PEPTIDE BASED ON THE GP41 CHR DOMAIN BOUND TO TITLE 2 GP41-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP41-5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALPHA/BETA-PEPTIDE BASED ON HIV GP41 CHR DOMAIN SEQUENCE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS HIV FUSION INHIBITOR, MIXED ALPHA-PEPTIDE / BETA-PEPTIDE BACKBONE, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.S.HORNE,L.M.JOHNSON,S.H.GELLMAN REVDAT 2 06-SEP-23 3O42 1 REMARK LINK REVDAT 1 24-AUG-11 3O42 0 JRNL AUTH W.S.HORNE,L.M.JOHNSON,S.H.GELLMAN JRNL TITL CHIMERIC AND NON-CHIMERIC FOLDAMER MIMICS OF THE CHR SEGMENT JRNL TITL 2 OF HIV PROTEIN GP41: EVIDENCE FOR THE IMPORTANCE OF A LARGE JRNL TITL 3 BINDING INTERFACE IN SIX-HELIX BUNDLE FORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 5600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.61000 REMARK 3 B22 (A**2) : -1.17000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.514 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.361 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1895 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2556 ; 1.507 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 5.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;36.161 ;26.465 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;17.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1461 ; 0.004 ; 0.019 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1155 ; 1.206 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 2.431 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 4.393 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 727 ; 7.392 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 198 REMARK 3 RESIDUE RANGE : B 1 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5744 10.3600 -9.7505 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.2100 REMARK 3 T33: 0.1697 T12: -0.0097 REMARK 3 T13: -0.0023 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 2.0656 L22: 4.2320 REMARK 3 L33: 4.2828 L12: -0.1405 REMARK 3 L13: 0.0754 L23: 2.4270 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.0930 S13: 0.1002 REMARK 3 S21: 0.0261 S22: -0.1242 S23: 0.0812 REMARK 3 S31: -0.0268 S32: -0.1717 S33: 0.0788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3O42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6128 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3O3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA CITRATE, 0.1 M HEPES PH 7.5, REMARK 280 20% V/V IPROH , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.70350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.08900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.58100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.08900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.70350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.58100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ACE B 0 REMARK 465 HMR B 36 REMARK 465 GLU B 37 REMARK 465 LEU B 38 REMARK 465 NH2 B 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HMR B 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 B3E B 12 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 HMR B 22 CA - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 B3A B 33 C - N - CA ANGL. DEV. = 21.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 51.17 -96.98 REMARK 500 LEU A 157 -72.43 -55.69 REMARK 500 B3A B 5 -63.14 -21.21 REMARK 500 B3E B 12 -76.52 -24.06 REMARK 500 B3A B 15 -71.85 -15.74 REMARK 500 B3A B 19 -76.75 0.98 REMARK 500 B3E B 26 -72.63 -5.23 REMARK 500 B3E B 29 -77.76 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 4 B3A B 5 136.12 REMARK 500 HMR B 8 ALA B 9 141.49 REMARK 500 ALA B 11 B3E B 12 137.46 REMARK 500 ALA B 14 B3A B 15 135.65 REMARK 500 GLU B 18 B3A B 19 139.53 REMARK 500 HMR B 22 ALA B 23 142.13 REMARK 500 GLN B 25 B3E B 26 140.66 REMARK 500 GLN B 28 B3E B 29 136.80 REMARK 500 GLU B 32 B3A B 33 134.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HMR B 8 -19.55 REMARK 500 HMR B 22 -19.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O3X RELATED DB: PDB REMARK 900 RELATED ID: 3O3Y RELATED DB: PDB REMARK 900 RELATED ID: 3O3Z RELATED DB: PDB REMARK 900 RELATED ID: 3O40 RELATED DB: PDB REMARK 900 RELATED ID: 3O43 RELATED DB: PDB DBREF 3O42 A 1 198 PDB 3O42 3O42 1 198 DBREF 3O42 B 0 39 PDB 3O42 3O42 0 39 SEQRES 1 A 198 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA SEQRES 2 A 198 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP SEQRES 3 A 198 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU SER GLY GLY SEQRES 4 A 198 SER GLY GLY TRP MET GLU TRP ASP ARG GLU ILE ASN ASN SEQRES 5 A 198 TYR THR SER LEU ILE HIS SER LEU ILE GLU GLU SER GLN SEQRES 6 A 198 ASN GLN GLN GLU LYS ASN GLU GLN GLU LEU LEU GLY GLY SEQRES 7 A 198 SER GLY GLY SER GLY ILE VAL GLN GLN GLN ASN ASN LEU SEQRES 8 A 198 LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU SEQRES 9 A 198 THR VAL TRP GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU SEQRES 10 A 198 SER GLY GLY SER GLY GLY TRP MET GLU TRP ASP ARG GLU SEQRES 11 A 198 ILE ASN ASN TYR THR SER LEU ILE HIS SER LEU ILE GLU SEQRES 12 A 198 GLU SER GLN ASN GLN GLN GLU LYS ASN GLU GLN GLU LEU SEQRES 13 A 198 LEU GLY GLY SER GLY GLY SER GLY ILE VAL GLN GLN GLN SEQRES 14 A 198 ASN ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU SEQRES 15 A 198 LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA SEQRES 16 A 198 ARG ILE LEU SEQRES 1 B 40 ACE B3T THR TRP GLU B3A TRP ASP HMR ALA ILE ALA B3E SEQRES 2 B 40 TYR ALA B3A ARG ILE GLU B3A LEU ILE HMR ALA ALA GLN SEQRES 3 B 40 B3E GLN GLN B3E LYS ASN GLU B3A ALA LEU HMR GLU LEU SEQRES 4 B 40 NH2 MODRES 3O42 B3A B 5 ALA (3S)-3-AMINOBUTANOIC ACID MODRES 3O42 HMR B 8 ARG BETA-HOMOARGININE MODRES 3O42 B3E B 12 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3O42 B3A B 15 ALA (3S)-3-AMINOBUTANOIC ACID MODRES 3O42 B3A B 19 ALA (3S)-3-AMINOBUTANOIC ACID MODRES 3O42 HMR B 22 ARG BETA-HOMOARGININE MODRES 3O42 B3E B 26 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3O42 B3E B 29 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3O42 B3A B 33 ALA (3S)-3-AMINOBUTANOIC ACID HET B3T B 1 8 HET B3A B 5 6 HET HMR B 8 12 HET B3E B 12 10 HET B3A B 15 6 HET B3A B 19 6 HET HMR B 22 6 HET B3E B 26 10 HET B3E B 29 10 HET B3A B 33 6 HET GOL A 199 6 HET IPA A 200 4 HETNAM B3T 3-AMINO-2,3,5-TRIDEOXY-D-THREO-PENTONIC ACID HETNAM B3A (3S)-3-AMINOBUTANOIC ACID HETNAM HMR BETA-HOMOARGININE HETNAM B3E (3S)-3-AMINOHEXANEDIOIC ACID HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 2 B3T C5 H11 N O3 FORMUL 2 B3A 4(C4 H9 N O2) FORMUL 2 HMR 2(C7 H16 N4 O2) FORMUL 2 B3E 3(C6 H11 N O4) FORMUL 3 GOL C3 H8 O3 FORMUL 4 IPA C3 H8 O FORMUL 5 HOH *10(H2 O) HELIX 1 1 GLY A 2 LEU A 36 1 35 HELIX 2 2 GLY A 39 GLY A 41 5 3 HELIX 3 3 GLY A 42 GLN A 73 1 32 HELIX 4 4 GLY A 80 LEU A 117 1 38 HELIX 5 5 GLY A 123 LEU A 156 1 34 HELIX 6 6 GLY A 161 LEU A 198 1 38 HELIX 7 7 B3T B 1 GLU B 32 1 32 LINK C B3T B 1 N THR B 2 1555 1555 1.32 LINK C GLU B 4 N B3A B 5 1555 1555 1.33 LINK C B3A B 5 N TRP B 6 1555 1555 1.34 LINK C ASP B 7 N HMR B 8 1555 1555 1.35 LINK C HMR B 8 N ALA B 9 1555 1555 1.33 LINK C ALA B 11 N B3E B 12 1555 1555 1.33 LINK C B3E B 12 N TYR B 13 1555 1555 1.34 LINK C ALA B 14 N B3A B 15 1555 1555 1.34 LINK C B3A B 15 N ARG B 16 1555 1555 1.34 LINK C GLU B 18 N B3A B 19 1555 1555 1.35 LINK C B3A B 19 N LEU B 20 1555 1555 1.32 LINK C ILE B 21 N HMR B 22 1555 1555 1.34 LINK C HMR B 22 N ALA B 23 1555 1555 1.32 LINK C GLN B 25 N B3E B 26 1555 1555 1.32 LINK C B3E B 26 N GLN B 27 1555 1555 1.32 LINK C GLN B 28 N B3E B 29 1555 1555 1.34 LINK C B3E B 29 N LYS B 30 1555 1555 1.35 LINK C GLU B 32 N B3A B 33 1555 1555 1.34 LINK C B3A B 33 N ALA B 34 1555 1555 1.34 SITE 1 AC1 4 GLU A 72 LEU A 76 HIS A 100 GLN A 103 SITE 1 AC2 2 GLY A 123 TRP A 127 CRYST1 47.407 57.162 102.178 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009787 0.00000