HEADER LYASE 08-JUN-10 3NEH TITLE CRYSTAL STRUCTURE OF THE PROTEIN LMO2462 FROM LISTERIA MONOCYTOGENES TITLE 2 COMPLEXED WITH ZN AND PHOSPHONATE MIMIC OF DIPEPTIDE L-LEU-D-ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RENAL DIPEPTIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.99.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 265669; SOURCE 4 STRAIN: 4B F2365; SOURCE 5 GENE: LMOF2365_2435; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NYSGRC, DIPEPTIDE L-LEU-D-ALA, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.CUMMINGS,F.M.RAUSHEL,S.K.BURLEY,S.C.ALMO, AUTHOR 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 2 10-FEB-21 3NEH 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 30-JUN-10 3NEH 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,J.CUMMINGS,F.M.RAUSHEL,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN LMO2462 FROM LISTERIA JRNL TITL 2 MONOCYTOGENES COMPLEXED WITH ZN AND PHOSPHONATE MIMIC OF JRNL TITL 3 DIPEPTIDE L-LEU-D-ALA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 75524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7381 - 4.9241 1.00 3056 157 0.1927 0.1806 REMARK 3 2 4.9241 - 3.9095 1.00 2921 158 0.1536 0.1757 REMARK 3 3 3.9095 - 3.4156 1.00 2883 163 0.1729 0.2094 REMARK 3 4 3.4156 - 3.1035 1.00 2845 151 0.2032 0.2043 REMARK 3 5 3.1035 - 2.8811 1.00 2862 169 0.2061 0.2417 REMARK 3 6 2.8811 - 2.7113 1.00 2832 153 0.2108 0.2403 REMARK 3 7 2.7113 - 2.5755 1.00 2814 153 0.1938 0.2181 REMARK 3 8 2.5755 - 2.4634 1.00 2809 175 0.1887 0.2188 REMARK 3 9 2.4634 - 2.3686 1.00 2891 123 0.1868 0.2097 REMARK 3 10 2.3686 - 2.2869 1.00 2796 155 0.1826 0.2339 REMARK 3 11 2.2869 - 2.2154 1.00 2815 140 0.1878 0.2132 REMARK 3 12 2.2154 - 2.1521 1.00 2780 166 0.1790 0.1959 REMARK 3 13 2.1521 - 2.0954 1.00 2813 153 0.1824 0.2212 REMARK 3 14 2.0954 - 2.0443 1.00 2800 150 0.1864 0.2039 REMARK 3 15 2.0443 - 1.9978 1.00 2778 163 0.1951 0.2432 REMARK 3 16 1.9978 - 1.9553 1.00 2851 149 0.2045 0.2365 REMARK 3 17 1.9553 - 1.9162 1.00 2780 149 0.2093 0.2568 REMARK 3 18 1.9162 - 1.8800 1.00 2801 148 0.2168 0.2487 REMARK 3 19 1.8800 - 1.8465 1.00 2796 149 0.2211 0.2902 REMARK 3 20 1.8465 - 1.8152 1.00 2811 133 0.2344 0.2870 REMARK 3 21 1.8152 - 1.7859 1.00 2787 139 0.2581 0.2800 REMARK 3 22 1.7859 - 1.7584 0.96 2702 129 0.2745 0.2920 REMARK 3 23 1.7584 - 1.7325 0.91 2534 128 0.2859 0.3577 REMARK 3 24 1.7325 - 1.7081 0.82 2322 126 0.3022 0.3317 REMARK 3 25 1.7081 - 1.6851 0.69 1902 99 0.3279 0.3620 REMARK 3 26 1.6851 - 1.6632 0.57 1611 75 0.3215 0.3818 REMARK 3 27 1.6632 - 1.6424 0.40 1130 49 0.3382 0.3546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 39.71 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.72820 REMARK 3 B22 (A**2) : 5.74480 REMARK 3 B33 (A**2) : -3.01660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5074 REMARK 3 ANGLE : 1.073 6854 REMARK 3 CHIRALITY : 0.074 755 REMARK 3 PLANARITY : 0.004 885 REMARK 3 DIHEDRAL : 15.708 1872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000059727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.642 REMARK 200 RESOLUTION RANGE LOW (A) : 39.727 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3LU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M BIS-TRIS, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.91700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.00700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.72650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.00700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.91700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.72650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 311 REMARK 465 GLY A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 MET B 1 REMARK 465 GLU B 311 REMARK 465 GLY B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 244 NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 205 CG - CD - NE ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 13.81 -161.51 REMARK 500 TRP A 134 -142.47 -92.79 REMARK 500 HIS A 174 -15.39 89.06 REMARK 500 HIS A 194 82.65 -166.43 REMARK 500 PHE A 226 51.93 -97.71 REMARK 500 SER A 301 -35.91 -155.90 REMARK 500 ASP B 27 20.43 -163.69 REMARK 500 TRP B 134 -144.16 -96.24 REMARK 500 HIS B 174 -15.11 88.19 REMARK 500 HIS B 194 84.95 -163.33 REMARK 500 PHE B 226 52.16 -99.27 REMARK 500 ASP B 265 -0.75 73.99 REMARK 500 SER B 301 -38.62 -155.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 320 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 ASP A 11 OD2 105.6 REMARK 620 3 ASP A 11 OD1 118.4 56.0 REMARK 620 4 GLU A 107 OE1 103.6 147.0 96.3 REMARK 620 5 L3A A 319 O31 99.4 86.4 131.3 103.7 REMARK 620 6 L3A A 319 N1 163.0 83.6 78.5 72.4 66.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 107 OE2 REMARK 620 2 HIS A 174 NE2 91.8 REMARK 620 3 HIS A 194 NE2 93.1 94.0 REMARK 620 4 L3A A 319 O31 90.8 161.3 104.4 REMARK 620 5 L3A A 319 O32 102.1 98.3 160.1 63.1 REMARK 620 6 L3A A 319 O62 172.7 95.5 86.7 82.2 76.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 320 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 9 NE2 REMARK 620 2 ASP B 11 OD2 106.5 REMARK 620 3 ASP B 11 OD1 117.8 53.6 REMARK 620 4 GLU B 107 OE1 107.8 140.5 92.8 REMARK 620 5 L3A B 319 O31 95.8 79.9 127.5 115.1 REMARK 620 6 L3A B 319 N1 164.3 75.6 76.3 76.7 69.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 107 OE2 REMARK 620 2 HIS B 174 NE2 97.3 REMARK 620 3 HIS B 194 NE2 95.3 93.3 REMARK 620 4 L3A B 319 O31 90.5 163.9 100.0 REMARK 620 5 L3A B 319 O32 103.5 98.7 156.1 65.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L3A A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE L3A B 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 321 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9513A RELATED DB: TARGETDB DBREF 3NEH A 4 310 UNP Q71WW4 Q71WW4_LISMF 2 308 DBREF 3NEH B 4 310 UNP Q71WW4 Q71WW4_LISMF 2 308 SEQADV 3NEH MET A 1 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH SER A 2 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH LEU A 3 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH GLU A 311 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH GLY A 312 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS A 313 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS A 314 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS A 315 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS A 316 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS A 317 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS A 318 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH MET B 1 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH SER B 2 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH LEU B 3 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH GLU B 311 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH GLY B 312 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS B 313 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS B 314 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS B 315 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS B 316 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS B 317 UNP Q71WW4 EXPRESSION TAG SEQADV 3NEH HIS B 318 UNP Q71WW4 EXPRESSION TAG SEQRES 1 A 318 MET SER LEU ARG VAL ILE ASP THR HIS CYS ASP ALA LEU SEQRES 2 A 318 TYR LYS LEU GLN ALA GLY LYS GLY LYS TYR THR PHE GLN SEQRES 3 A 318 ASP ALA GLU GLU LEU ASP VAL ASN PHE GLU ARG LEU ILE SEQRES 4 A 318 GLU ALA LYS MET LEU LEU GLN GLY PHE ALA ILE PHE LEU SEQRES 5 A 318 ASP GLU ASP ILE PRO VAL GLU HIS LYS TRP LYS LYS ALA SEQRES 6 A 318 VAL GLU GLN VAL ASN ILE PHE LYS GLN HIS VAL LEU HIS SEQRES 7 A 318 LYS GLY GLY ILE ILE HIS HIS VAL LYS LYS TRP CYS ASP SEQRES 8 A 318 LEU GLU ASN LEU PRO GLU ASP LYS ILE GLY ALA MET LEU SEQRES 9 A 318 THR LEU GLU GLY ILE GLU PRO ILE GLY ARG ASP LEU ASP SEQRES 10 A 318 LYS LEU THR GLN LEU LEU ASP GLY GLY VAL LEU SER VAL SEQRES 11 A 318 GLY LEU THR TRP ASN ASN ALA ASN LEU ALA ALA ASP GLY SEQRES 12 A 318 ILE MET GLU GLU ARG GLY ALA GLY LEU THR ARG PHE GLY SEQRES 13 A 318 LYS ASP ILE ILE HIS LEU LEU ASN GLU ARG LYS VAL PHE SEQRES 14 A 318 THR ASP VAL SER HIS LEU SER VAL LYS ALA PHE TRP GLU SEQRES 15 A 318 THR LEU GLU GLN ALA GLU PHE VAL ILE ALA SER HIS SER SEQRES 16 A 318 ASN ALA LYS ALA ILE CYS SER HIS PRO ARG ASN LEU ASP SEQRES 17 A 318 ASP GLU GLN ILE LYS ALA MET ILE GLU HIS ASP ALA MET SEQRES 18 A 318 ILE HIS VAL VAL PHE TYR PRO LEU PHE THR THR ASN ASN SEQRES 19 A 318 GLY VAL ALA ASP THR GLU ASP VAL ILE ARG HIS ILE ASP SEQRES 20 A 318 HIS ILE CYS GLU LEU GLY GLY LEU LYS ASN ILE GLY PHE SEQRES 21 A 318 GLY SER ASP PHE ASP GLY ILE PRO ASP HIS VAL LYS GLY SEQRES 22 A 318 LEU GLU HIS VAL GLY LYS TYR GLN SER PHE LEU GLU THR SEQRES 23 A 318 LEU GLU LYS HIS TYR THR LYS GLU GLU ILE GLU GLY PHE SEQRES 24 A 318 ALA SER ARG ASN PHE LEU ASN HIS LEU PRO LYS GLU GLY SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS SEQRES 1 B 318 MET SER LEU ARG VAL ILE ASP THR HIS CYS ASP ALA LEU SEQRES 2 B 318 TYR LYS LEU GLN ALA GLY LYS GLY LYS TYR THR PHE GLN SEQRES 3 B 318 ASP ALA GLU GLU LEU ASP VAL ASN PHE GLU ARG LEU ILE SEQRES 4 B 318 GLU ALA LYS MET LEU LEU GLN GLY PHE ALA ILE PHE LEU SEQRES 5 B 318 ASP GLU ASP ILE PRO VAL GLU HIS LYS TRP LYS LYS ALA SEQRES 6 B 318 VAL GLU GLN VAL ASN ILE PHE LYS GLN HIS VAL LEU HIS SEQRES 7 B 318 LYS GLY GLY ILE ILE HIS HIS VAL LYS LYS TRP CYS ASP SEQRES 8 B 318 LEU GLU ASN LEU PRO GLU ASP LYS ILE GLY ALA MET LEU SEQRES 9 B 318 THR LEU GLU GLY ILE GLU PRO ILE GLY ARG ASP LEU ASP SEQRES 10 B 318 LYS LEU THR GLN LEU LEU ASP GLY GLY VAL LEU SER VAL SEQRES 11 B 318 GLY LEU THR TRP ASN ASN ALA ASN LEU ALA ALA ASP GLY SEQRES 12 B 318 ILE MET GLU GLU ARG GLY ALA GLY LEU THR ARG PHE GLY SEQRES 13 B 318 LYS ASP ILE ILE HIS LEU LEU ASN GLU ARG LYS VAL PHE SEQRES 14 B 318 THR ASP VAL SER HIS LEU SER VAL LYS ALA PHE TRP GLU SEQRES 15 B 318 THR LEU GLU GLN ALA GLU PHE VAL ILE ALA SER HIS SER SEQRES 16 B 318 ASN ALA LYS ALA ILE CYS SER HIS PRO ARG ASN LEU ASP SEQRES 17 B 318 ASP GLU GLN ILE LYS ALA MET ILE GLU HIS ASP ALA MET SEQRES 18 B 318 ILE HIS VAL VAL PHE TYR PRO LEU PHE THR THR ASN ASN SEQRES 19 B 318 GLY VAL ALA ASP THR GLU ASP VAL ILE ARG HIS ILE ASP SEQRES 20 B 318 HIS ILE CYS GLU LEU GLY GLY LEU LYS ASN ILE GLY PHE SEQRES 21 B 318 GLY SER ASP PHE ASP GLY ILE PRO ASP HIS VAL LYS GLY SEQRES 22 B 318 LEU GLU HIS VAL GLY LYS TYR GLN SER PHE LEU GLU THR SEQRES 23 B 318 LEU GLU LYS HIS TYR THR LYS GLU GLU ILE GLU GLY PHE SEQRES 24 B 318 ALA SER ARG ASN PHE LEU ASN HIS LEU PRO LYS GLU GLY SEQRES 25 B 318 HIS HIS HIS HIS HIS HIS HET L3A A 319 15 HET ZN A 320 1 HET ZN A 321 1 HET L3A B 319 15 HET ZN B 320 1 HET ZN B 321 1 HETNAM L3A (2R)-3-[(R)-[(1R)-1-AMINO-3-METHYLBUTYL](HYDROXY) HETNAM 2 L3A PHOSPHORYL]-2-METHYLPROPANOIC ACID HETNAM ZN ZINC ION HETSYN L3A L-LEU-D-ALA PHOSPHINATE PSEUDODIPEPTIDE FORMUL 3 L3A 2(C9 H20 N O4 P) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *354(H2 O) HELIX 1 1 ASP A 11 LYS A 20 1 10 HELIX 2 2 ASN A 34 LYS A 42 1 9 HELIX 3 3 PRO A 57 GLU A 59 5 3 HELIX 4 4 HIS A 60 VAL A 76 1 17 HELIX 5 5 LYS A 88 ASN A 94 1 7 HELIX 6 6 ILE A 109 GLY A 113 5 5 HELIX 7 7 ASP A 115 GLY A 125 1 11 HELIX 8 8 THR A 153 LYS A 167 1 15 HELIX 9 9 SER A 176 ALA A 187 1 12 HELIX 10 10 ASP A 208 HIS A 218 1 11 HELIX 11 11 TYR A 227 THR A 232 1 6 HELIX 12 12 ASP A 238 LEU A 252 1 15 HELIX 13 13 GLY A 254 LYS A 256 5 3 HELIX 14 14 HIS A 276 GLY A 278 5 3 HELIX 15 15 LYS A 279 GLU A 288 1 10 HELIX 16 16 THR A 292 SER A 301 1 10 HELIX 17 17 SER A 301 HIS A 307 1 7 HELIX 18 18 ASP B 11 LYS B 20 1 10 HELIX 19 19 ASN B 34 LYS B 42 1 9 HELIX 20 20 HIS B 60 VAL B 76 1 17 HELIX 21 21 HIS B 78 GLY B 81 5 4 HELIX 22 22 LYS B 88 ASN B 94 1 7 HELIX 23 23 ILE B 109 GLY B 113 5 5 HELIX 24 24 ASP B 115 GLY B 125 1 11 HELIX 25 25 THR B 153 LYS B 167 1 15 HELIX 26 26 SER B 176 ALA B 187 1 12 HELIX 27 27 ASP B 208 HIS B 218 1 11 HELIX 28 28 TYR B 227 THR B 231 5 5 HELIX 29 29 ASP B 238 LEU B 252 1 15 HELIX 30 30 GLY B 254 LYS B 256 5 3 HELIX 31 31 HIS B 276 GLY B 278 5 3 HELIX 32 32 LYS B 279 GLU B 288 1 10 HELIX 33 33 THR B 292 SER B 301 1 10 HELIX 34 34 SER B 301 ASN B 306 1 6 SHEET 1 A10 ILE A 83 HIS A 85 0 SHEET 2 A10 ILE A 100 GLU A 107 1 O ILE A 100 N HIS A 84 SHEET 3 A10 VAL A 127 GLY A 131 1 O GLY A 131 N LEU A 106 SHEET 4 A10 PHE A 169 ASP A 171 1 O ASP A 171 N VAL A 130 SHEET 5 A10 VAL A 190 ALA A 192 1 O ILE A 191 N THR A 170 SHEET 6 A10 MET A 221 VAL A 224 1 O HIS A 223 N ALA A 192 SHEET 7 A10 ILE A 258 PHE A 260 1 O GLY A 259 N ILE A 222 SHEET 8 A10 VAL A 5 CYS A 10 1 N THR A 8 O PHE A 260 SHEET 9 A10 MET A 43 ILE A 50 1 O LEU A 44 N VAL A 5 SHEET 10 A10 ILE A 100 GLU A 107 1 O MET A 103 N PHE A 48 SHEET 1 B10 ILE B 83 HIS B 85 0 SHEET 2 B10 ILE B 100 GLU B 107 1 O ILE B 100 N HIS B 84 SHEET 3 B10 VAL B 127 GLY B 131 1 O GLY B 131 N LEU B 106 SHEET 4 B10 PHE B 169 ASP B 171 1 O ASP B 171 N VAL B 130 SHEET 5 B10 VAL B 190 ALA B 192 1 O ILE B 191 N THR B 170 SHEET 6 B10 MET B 221 VAL B 224 1 O HIS B 223 N ALA B 192 SHEET 7 B10 ILE B 258 PHE B 260 1 O GLY B 259 N ILE B 222 SHEET 8 B10 VAL B 5 CYS B 10 1 N THR B 8 O PHE B 260 SHEET 9 B10 MET B 43 ILE B 50 1 O LEU B 44 N VAL B 5 SHEET 10 B10 ILE B 100 GLU B 107 1 O MET B 103 N PHE B 48 LINK NE2 HIS A 9 ZN ZN A 320 1555 1555 2.21 LINK OD2 ASP A 11 ZN ZN A 320 1555 1555 2.20 LINK OD1 ASP A 11 ZN ZN A 320 1555 1555 2.45 LINK OE1 GLU A 107 ZN ZN A 320 1555 1555 2.03 LINK OE2 GLU A 107 ZN ZN A 321 1555 1555 2.15 LINK NE2 HIS A 174 ZN ZN A 321 1555 1555 2.02 LINK NE2 HIS A 194 ZN ZN A 321 1555 1555 2.28 LINK O31 L3A A 319 ZN ZN A 320 1555 1555 2.45 LINK N1 L3A A 319 ZN ZN A 320 1555 1555 2.70 LINK O31 L3A A 319 ZN ZN A 321 1555 1555 2.18 LINK O32 L3A A 319 ZN ZN A 321 1555 1555 2.61 LINK O62 L3A A 319 ZN ZN A 321 1555 1555 2.63 LINK NE2 HIS B 9 ZN ZN B 320 1555 1555 2.18 LINK OD2 ASP B 11 ZN ZN B 320 1555 1555 2.34 LINK OD1 ASP B 11 ZN ZN B 320 1555 1555 2.51 LINK OE1 GLU B 107 ZN ZN B 320 1555 1555 2.01 LINK OE2 GLU B 107 ZN ZN B 321 1555 1555 2.16 LINK NE2 HIS B 174 ZN ZN B 321 1555 1555 2.07 LINK NE2 HIS B 194 ZN ZN B 321 1555 1555 2.27 LINK O31 L3A B 319 ZN ZN B 320 1555 1555 2.37 LINK N1 L3A B 319 ZN ZN B 320 1555 1555 2.69 LINK O31 L3A B 319 ZN ZN B 321 1555 1555 2.25 LINK O32 L3A B 319 ZN ZN B 321 1555 1555 2.37 SITE 1 AC1 16 HIS A 9 ASP A 11 TYR A 14 PHE A 51 SITE 2 AC1 16 GLU A 107 TRP A 134 HIS A 174 HIS A 194 SITE 3 AC1 16 ARG A 205 TYR A 227 PHE A 230 ASP A 263 SITE 4 AC1 16 GLY A 266 ZN A 320 ZN A 321 HOH A 415 SITE 1 AC2 4 HIS A 9 ASP A 11 GLU A 107 L3A A 319 SITE 1 AC3 4 GLU A 107 HIS A 174 HIS A 194 L3A A 319 SITE 1 AC4 16 HIS B 9 ASP B 11 TYR B 14 PHE B 51 SITE 2 AC4 16 GLU B 107 TRP B 134 HIS B 174 HIS B 194 SITE 3 AC4 16 ARG B 205 TYR B 227 PHE B 230 ASP B 263 SITE 4 AC4 16 GLY B 266 ZN B 320 ZN B 321 HOH B 462 SITE 1 AC5 5 HIS B 9 ASP B 11 GLU B 107 L3A B 319 SITE 2 AC5 5 ZN B 321 SITE 1 AC6 5 GLU B 107 HIS B 174 HIS B 194 L3A B 319 SITE 2 AC6 5 ZN B 320 CRYST1 53.834 79.453 152.014 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006578 0.00000