HEADER MEMBRANE PROTEIN 13-NOV-09 3KOG TITLE CRYSTAL STRUCTURE OF PUTATIVE PORE-FORMING TOXIN (YP_001301288.1) FROM TITLE 2 BACTEROIDES VULGATUS ATCC 8482 AT 1.85 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PORE-FORMING TOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS ATCC 8482; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_4064; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PORE-FORMING TOXIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3KOG 1 REMARK SEQADV REVDAT 4 17-JUL-19 3KOG 1 REMARK LINK REVDAT 3 01-NOV-17 3KOG 1 REMARK REVDAT 2 13-JUL-11 3KOG 1 VERSN REVDAT 1 01-DEC-09 3KOG 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PORE-FORMING TOXIN JRNL TITL 2 (YP_001301288.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.85 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1468 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1944 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1260 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2673 ; 1.621 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3143 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.642 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.549 ;26.264 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;14.076 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;17.383 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2222 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1204 ; 0.959 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 484 ; 0.277 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1981 ; 1.697 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 2.690 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 669 ; 4.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1910 26.4290 48.5930 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: 0.0656 REMARK 3 T33: 0.0528 T12: -0.0094 REMARK 3 T13: 0.0137 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.4965 L22: 1.2485 REMARK 3 L33: 0.7718 L12: -0.3392 REMARK 3 L13: 0.2804 L23: 0.3460 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: -0.0271 S13: 0.0376 REMARK 3 S21: -0.0529 S22: 0.1747 S23: -0.1794 REMARK 3 S31: -0.0804 S32: -0.0569 S33: -0.0835 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7700 29.9400 38.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.1039 REMARK 3 T33: 0.0501 T12: -0.0047 REMARK 3 T13: 0.0352 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 3.5387 L22: 3.3044 REMARK 3 L33: 4.7673 L12: 2.3669 REMARK 3 L13: 3.5712 L23: 3.4333 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.4123 S13: -0.1249 REMARK 3 S21: -0.0845 S22: 0.2816 S23: -0.2361 REMARK 3 S31: -0.1165 S32: 0.3624 S33: -0.2725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 ACETATE (ACT), GLYCEROL (GOL), AND (4R)-2-METHYL-2,4-PENTANEDIOL REMARK 3 (MRD) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE REMARK 3 BEEN MODELED INTO THE SOLVENT STRUCTURE. 5. TLS GROUPS WERE REMARK 3 ASSIGNED WITH THE AID OF THE TLSMD SERVER. REMARK 4 REMARK 4 3KOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.43 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.85503,0.97926,0.97845 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.814 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72600 REMARK 200 R SYM FOR SHELL (I) : 0.72600 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31.6000% 2-METHYL-2,4-PENTANEDIOL, REMARK 280 0.2000M SODIUM CHLORIDE, 0.1M SODIUM ACETATE PH 4.43, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.39800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.16850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.39800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.16850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.39800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.16850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.05000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.16850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.39800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 28 REMARK 465 CYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 ILE A 34 REMARK 465 GLY A 35 REMARK 465 ILE A 36 REMARK 465 GLU A 37 REMARK 465 VAL A 38 REMARK 465 LYS A 228 REMARK 465 ARG A 229 REMARK 465 GLY A 267 REMARK 465 HIS A 268 REMARK 465 GLY A 269 REMARK 465 ASP A 270 REMARK 465 ASP A 271 REMARK 465 SER A 272 REMARK 465 ASN A 273 REMARK 465 ALA A 274 REMARK 465 GLY A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 ILE A 278 REMARK 465 ILE A 279 REMARK 465 ILE A 280 REMARK 465 ALA A 281 REMARK 465 ASP A 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 107 CE NZ REMARK 470 LYS A 144 CE NZ REMARK 470 LYS A 160 NZ REMARK 470 LYS A 193 NZ REMARK 470 ASN A 197 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 65 O HOH A 307 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 170 OE2 GLU A 172 6665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393242 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT (28-282) WAS EXPRESSED WITH THE REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3KOG A 28 282 UNP A6L7K2 A6L7K2_BACV8 28 282 SEQADV 3KOG GLY A 0 UNP A6L7K2 EXPRESSION TAG SEQRES 1 A 256 GLY SER CYS GLU LYS GLU ASN ILE GLY ILE GLU VAL THR SEQRES 2 A 256 PRO VAL ASN ALA LYS PHE ILE ILE THR PRO VAL VAL ILE SEQRES 3 A 256 ASP ALA THR THR GLY THR ASP VAL THR GLN SER ALA GLU SEQRES 4 A 256 ILE SER PHE SER LYS GLY ASN GLY THR TYR GLU GLY THR SEQRES 5 A 256 PRO GLU LEU ALA SER GLU SER ILE ASN ILE ASN ALA LYS SEQRES 6 A 256 TYR LYS GLY MSE THR GLY SER ALA SER VAL THR ILE PRO SEQRES 7 A 256 ALA LEU LYS ALA GLY GLN PHE GLY ALA LYS GLU VAL THR SEQRES 8 A 256 ILE ILE LEU SER GLU ASN PHE PHE ALA GLN GLU GLU SER SEQRES 9 A 256 SER ASN SER GLN ILE GLU THR THR LYS HIS SER GLY PHE SEQRES 10 A 256 LYS ASN ASN THR SER ASP TYR TRP TYR TYR ILE THR VAL SEQRES 11 A 256 THR TYR THR LYS LYS GLU GLY SER GLU VAL ILE LYS ASN SEQRES 12 A 256 ASP TYR GLU GLY ASP ASP SER GLU ILE LYS ASN ILE ILE SEQRES 13 A 256 ASP ALA TYR ASN LYS GLY VAL ARG GLU ASP LYS VAL THR SEQRES 14 A 256 LEU ASN ASP VAL GLN VAL LEU ALA HIS SER ARG PHE SER SEQRES 15 A 256 VAL PHE VAL ASP TYR MSE LYS THR THR SER VAL TYR GLN SEQRES 16 A 256 ILE ILE GLU LYS SER PRO LYS ARG ASP GLY ASN PRO VAL SEQRES 17 A 256 ALA SER PHE THR VAL ASP SER TYR ASN THR ILE VAL SER SEQRES 18 A 256 PRO LYS ASN GLU GLN ILE PRO GLY HIS GLY HIS ALA PRO SEQRES 19 A 256 SER HIS GLY HIS GLY HIS GLY HIS GLY ASP ASP SER ASN SEQRES 20 A 256 ALA GLY GLY GLY ILE ILE ILE ALA ASP MODRES 3KOG MSE A 95 MET SELENOMETHIONINE MODRES 3KOG MSE A 214 MET SELENOMETHIONINE HET MSE A 95 8 HET MSE A 214 8 HET ACT A 1 4 HET ACT A 2 4 HET ACT A 3 4 HET GOL A 4 6 HET GOL A 5 6 HET MRD A 6 8 HET MRD A 7 8 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 MRD 2(C6 H14 O2) FORMUL 9 HOH *169(H2 O) HELIX 1 1 VAL A 60 ALA A 64 5 5 HELIX 2 2 ASP A 175 TYR A 185 1 11 SHEET 1 A 6 THR A 74 GLU A 76 0 SHEET 2 A 6 LYS A 44 ASP A 53 -1 N PHE A 45 O TYR A 75 SHEET 3 A 6 PHE A 111 LEU A 120 1 O LEU A 120 N ILE A 52 SHEET 4 A 6 PRO A 233 GLU A 251 -1 O VAL A 246 N PHE A 111 SHEET 5 A 6 SER A 205 GLU A 224 -1 N THR A 216 O SER A 241 SHEET 6 A 6 LYS A 144 ASN A 146 -1 N ASN A 146 O SER A 205 SHEET 1 B 5 PHE A 124 HIS A 140 0 SHEET 2 B 5 SER A 205 GLU A 224 -1 O GLN A 221 N GLN A 127 SHEET 3 B 5 PRO A 233 GLU A 251 -1 O SER A 241 N THR A 216 SHEET 4 B 5 TYR A 152 ASN A 169 -1 N GLY A 163 O TYR A 242 SHEET 5 B 5 GLY A 188 VAL A 201 -1 O ARG A 190 N GLU A 162 SHEET 1 C 3 GLU A 65 PHE A 68 0 SHEET 2 C 3 GLU A 84 TYR A 92 -1 O ASN A 89 N SER A 67 SHEET 3 C 3 MSE A 95 ILE A 103 -1 O ALA A 99 N ILE A 88 LINK C MSE A 95 N THR A 96 1555 1555 1.32 LINK C MSE A 214 N LYS A 215 1555 1555 1.33 CISPEP 1 THR A 78 PRO A 79 0 9.00 SITE 1 AC1 2 HOH A 390 HOH A 391 SITE 1 AC2 1 SER A 130 SITE 1 AC3 8 HOH A 13 GLU A 115 VAL A 116 THR A 117 SITE 2 AC3 8 SER A 164 TYR A 185 HOH A 311 HOH A 410 SITE 1 AC4 7 HOH A 25 ASP A 59 VAL A 60 THR A 61 SITE 2 AC4 7 GLN A 62 HOH A 319 HOH A 328 SITE 1 AC5 3 GLN A 110 ASP A 212 HOH A 305 SITE 1 AC6 3 SER A 83 SER A 85 THR A 102 CRYST1 66.796 70.337 104.100 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009606 0.00000