HEADER HYDROLASE 12-MAY-09 3HFT TITLE CRYSTAL STRUCTURE OF A PUTATIVE POLYSACCHARIDE DEACETYLASE INVOLVED IN TITLE 2 O-ANTIGEN BIOSYNTHESIS (WBMS, BB0128) FROM BORDETELLA BRONCHISEPTICA TITLE 3 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: WBMS, POLYSACCHARIDE DEACETYLASE INVOLVED IN O-ANTIGEN COMPND 3 BIOSYNTHESIS; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA; SOURCE 3 ORGANISM_COMMON: ALCALIGENES BRONCHISEPTICUS; SOURCE 4 ORGANISM_TAXID: 518; SOURCE 5 GENE: BB0128, NP_886680.1, WBMS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 6 01-FEB-23 3HFT 1 REMARK SEQADV REVDAT 5 24-JUL-19 3HFT 1 REMARK LINK REVDAT 4 01-NOV-17 3HFT 1 REMARK REVDAT 3 13-JUL-11 3HFT 1 VERSN REVDAT 2 23-MAR-11 3HFT 1 HEADER TITLE KEYWDS REVDAT 1 23-JUN-09 3HFT 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF WBMS, POLYSACCHARIDE DEACETYLASE JRNL TITL 2 INVOLVED IN O-ANTIGEN BIOSYNTHESIS (NP_886680.1) FROM JRNL TITL 3 BORDETELLA BRONCHISEPTICA AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2237 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.639 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2117 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1413 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2894 ; 1.437 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3398 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 4.564 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;30.329 ;23.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;12.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2402 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 474 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 464 ; 0.215 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1588 ; 0.213 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1060 ; 0.188 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1047 ; 0.091 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 263 ; 0.172 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.266 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.296 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.217 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 1.791 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 497 ; 0.455 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2041 ; 2.584 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 969 ; 4.458 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 5.929 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5020 1.3550 15.4130 REMARK 3 T TENSOR REMARK 3 T11: -0.0764 T22: -0.0751 REMARK 3 T33: -0.0838 T12: 0.0382 REMARK 3 T13: 0.0198 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.1136 L22: 1.8193 REMARK 3 L33: 2.0699 L12: -0.4288 REMARK 3 L13: 0.7310 L23: -1.1990 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.2073 S13: -0.1344 REMARK 3 S21: 0.2659 S22: 0.2332 S23: 0.1583 REMARK 3 S31: -0.1494 S32: -0.2808 S33: -0.2204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FUNLORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.A REMARK 3 ZINC ION WITH 40% OCCUPANCY IS MODELED. THE PRESENCE OF ZINC AT REMARK 3 THIS SITE IS SUPPORTED BY X-RAY FLUORESCENCE, BINDING GEOMETRY REMARK 3 AND ANOMALOUS DIFFERENCE FOURIERS ABOVE AND BELOW THE ZINC REMARK 3 ABSORPTION EDGE. THE OCCUPANCY WAS LOWERED TO 40% TO BETTER FIT REMARK 3 THE OBSERVED DENSITY. 5.MPD AND ETHYLENE GLYCOL MOLECULES FROM REMARK 3 AND CRYSTALLIZATION ARE MODELED IN THE STRUCTURE. AN ACETATE- REMARK 3 LIKE UNKNOWN LIGAND(UNL) IS MODELED NEAR THE METAL BINDING SITE REMARK 3 ACCORDING TO THE POSSIBLE BIOLOGICAL FUNCTION OF THIS PROTEIN, A REMARK 3 METAL-ION DEPENDENT DEACETYLASE. REMARK 4 REMARK 4 3HFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000053080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97985,0.97968 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.566 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.90200 REMARK 200 R SYM FOR SHELL (I) : 0.90200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0000% MPD, 0.1M HEPES PH 7.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.34600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.36200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.36200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.67300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.36200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.36200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.01900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.36200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.36200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.67300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.36200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.36200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.01900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.34600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 HIS A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 MSE A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 ARG A 12 REMARK 465 MSE A 13 REMARK 465 ARG A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CD NE CZ NH1 NH2 REMARK 470 ASN A 18 CG OD1 ND2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLN A 107 CD OE1 NE2 REMARK 470 ARG A 142 CZ NH1 NH2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 213 SE MSE A 213 CE -0.513 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 117 70.56 -150.33 REMARK 500 ASP A 168 25.95 48.17 REMARK 500 ASP A 168 27.92 48.17 REMARK 500 SER A 241 -159.41 -86.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 257 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 45 OD1 REMARK 620 2 HIS A 91 NE2 85.7 REMARK 620 3 HIS A 126 ND1 107.7 96.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 392657 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3HFT A 1 256 UNP Q7WR29 Q7WR29_BORBR 1 256 SEQADV 3HFT GLY A 0 UNP Q7WR29 EXPRESSION TAG SEQRES 1 A 257 GLY MSE ALA GLY ALA ALA HIS ARG LEU MSE GLU ALA ARG SEQRES 2 A 257 MSE ARG ARG TYR ASP ASN LYS PHE ALA ARG ILE SER ASP SEQRES 3 A 257 ILE ASP ILE ASN GLN PRO GLU SER TRP ARG GLY ARG ILE SEQRES 4 A 257 PHE LEU THR PHE ASP ILE ASP TRP ALA ALA ASP PHE VAL SEQRES 5 A 257 LEU GLN ASP THR ILE ASP LEU ILE GLU GLY ALA GLY VAL SEQRES 6 A 257 CYS ALA THR TRP PHE ALA THR HIS SER THR PRO LEU LEU SEQRES 7 A 257 GLU ASN ILE ARG ARG ASN PRO LEU PHE GLU LEU GLY VAL SEQRES 8 A 257 HIS PRO ASN PHE ASN PRO LEU LEU ALA GLY ALA HIS ALA SEQRES 9 A 257 GLU GLY VAL GLN GLU ILE LEU ASP ARG THR LEU GLU LEU SEQRES 10 A 257 ALA PRO GLY CYS VAL SER VAL ARG SER HIS SER LEU VAL SEQRES 11 A 257 GLN ALA THR SER ILE LEU ASN MSE PHE GLY GLU ARG ARG SEQRES 12 A 257 LEU ARG TYR ASP CYS ASN ILE LEU VAL PRO TRP ASP ALA SEQRES 13 A 257 GLY ILE VAL LEU GLN PRO TRP ARG HIS TRP THR GLY ASP SEQRES 14 A 257 MSE VAL ARG VAL PRO TYR LEU TRP GLU ASP ASP VAL ALA SEQRES 15 A 257 CYS LEU TYR ASP TRP GLU PHE ASP SER THR PHE ASP TYR SEQRES 16 A 257 TRP TYR GLN PRO ASP GLY ILE ASN VAL LEU ASP PHE HIS SEQRES 17 A 257 PRO ILE HIS VAL TYR MSE ASN THR GLU SER LEU ARG ARG SEQRES 18 A 257 TYR GLU ASP SER ARG GLU VAL HIS ARG ASN PRO VAL ASP SEQRES 19 A 257 LEU ILE ARG TRP ARG ASN THR SER ALA GLY SER ARG THR SEQRES 20 A 257 PHE LEU GLN SER LEU LEU ALA ARG ASN ILE MODRES 3HFT MSE A 137 MET SELENOMETHIONINE MODRES 3HFT MSE A 169 MET SELENOMETHIONINE MODRES 3HFT MSE A 213 MET SELENOMETHIONINE HET MSE A 137 16 HET MSE A 169 16 HET MSE A 213 8 HET ZN A 257 1 HET UNL A 258 4 HET EDO A 259 4 HET EDO A 260 4 HET EDO A 261 4 HET EDO A 262 4 HET EDO A 263 4 HET MPD A 264 8 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 MPD C6 H14 O2 FORMUL 10 HOH *156(H2 O) HELIX 1 1 ARG A 22 ILE A 26 5 5 HELIX 2 2 GLN A 30 TRP A 34 5 5 HELIX 3 3 ALA A 48 GLY A 63 1 16 HELIX 4 4 PRO A 75 ASN A 83 1 9 HELIX 5 5 PHE A 94 GLY A 100 1 7 HELIX 6 6 GLY A 105 GLU A 115 1 11 HELIX 7 7 SER A 125 VAL A 129 5 5 HELIX 8 8 ALA A 131 ARG A 141 1 11 HELIX 9 9 ASP A 178 ASP A 185 1 8 HELIX 10 10 HIS A 207 ASN A 214 1 8 HELIX 11 11 SER A 217 SER A 224 1 8 HELIX 12 12 ARG A 225 HIS A 228 5 4 HELIX 13 13 ASP A 233 ARG A 238 5 6 HELIX 14 14 GLY A 243 ILE A 256 1 14 SHEET 1 A 5 PHE A 86 VAL A 90 0 SHEET 2 A 5 ALA A 66 ALA A 70 1 N TRP A 68 O GLY A 89 SHEET 3 A 5 ILE A 38 ASP A 43 1 N PHE A 42 O PHE A 69 SHEET 4 A 5 ASN A 202 PHE A 206 1 O ASN A 202 N PHE A 39 SHEET 5 A 5 TRP A 176 GLU A 177 1 N TRP A 176 O ASP A 205 SHEET 1 B 4 SER A 122 VAL A 123 0 SHEET 2 B 4 TYR A 145 ASP A 146 1 O TYR A 145 N VAL A 123 SHEET 3 B 4 VAL A 170 ARG A 171 1 O VAL A 170 N ASP A 146 SHEET 4 B 4 TRP A 162 ARG A 163 -1 N TRP A 162 O ARG A 171 LINK C ASN A 136 N AMSE A 137 1555 1555 1.33 LINK C ASN A 136 N BMSE A 137 1555 1555 1.33 LINK C AMSE A 137 N PHE A 138 1555 1555 1.34 LINK C BMSE A 137 N PHE A 138 1555 1555 1.34 LINK C ASP A 168 N AMSE A 169 1555 1555 1.33 LINK C ASP A 168 N BMSE A 169 1555 1555 1.33 LINK C AMSE A 169 N VAL A 170 1555 1555 1.33 LINK C BMSE A 169 N VAL A 170 1555 1555 1.33 LINK C TYR A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N ASN A 214 1555 1555 1.33 LINK OD1 ASP A 45 ZN ZN A 257 1555 1555 2.25 LINK NE2 HIS A 91 ZN ZN A 257 1555 1555 2.26 LINK ND1 HIS A 126 ZN ZN A 257 1555 1555 2.35 SITE 1 AC1 4 ASP A 45 HIS A 91 HIS A 126 EDO A 261 SITE 1 AC2 5 SER A 127 THR A 132 GLU A 177 EDO A 261 SITE 2 AC2 5 HOH A 360 SITE 1 AC3 5 ASP A 45 ASP A 179 HIS A 210 HOH A 317 SITE 2 AC3 5 HOH A 375 SITE 1 AC4 7 ILE A 157 GLN A 197 ARG A 236 HOH A 279 SITE 2 AC4 7 HOH A 281 HOH A 301 HOH A 408 SITE 1 AC5 10 ASP A 43 ASP A 45 HIS A 91 HIS A 126 SITE 2 AC5 10 SER A 127 GLU A 177 ASP A 205 HIS A 207 SITE 3 AC5 10 ZN A 257 UNL A 258 SITE 1 AC6 6 ASP A 154 ARG A 163 TYR A 184 TRP A 186 SITE 2 AC6 6 HOH A 284 HOH A 370 SITE 1 AC7 6 ASP A 17 ASN A 18 LYS A 19 PHE A 20 SITE 2 AC7 6 ASN A 255 HOH A 298 SITE 1 AC8 8 ASP A 193 TYR A 194 TYR A 196 PRO A 198 SITE 2 AC8 8 VAL A 227 ASP A 233 ARG A 236 TRP A 237 CRYST1 74.724 74.724 142.692 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007008 0.00000