HEADER HYDROLASE 16-FEB-09 3GA9 TITLE CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS TRANSPEPTIDASE ENZYME CAPD, TITLE 2 CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSULE BIOSYNTHESIS PROTEIN CAPD; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: UNP RESIDUES 29-351; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LARGE CHAIN; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAPSULE BIOSYNTHESIS PROTEIN CAPD; COMPND 9 CHAIN: S; COMPND 10 FRAGMENT: UNP RESIDUES 352-528; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SMALL CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 STRAIN: A0389; SOURCE 5 GENE: BAK_B0097, BXB0063, CAPD, DEP, GBAA_PXO2_0063, PXO2-55; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 13 ORGANISM_TAXID: 1392; SOURCE 14 STRAIN: A0389; SOURCE 15 GENE: CAPD, DEP, PXO2-55, BXB0063, GBAA_PXO2_0063; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS CAPD PROTEIN, BACILLUS ANTHRACIS, THE GREAT LAKES REGIONAL CENTER OF KEYWDS 2 EXCELLENCE, GLRCE, CAPSULE BIOGENESIS/DEGRADATION, VIRULENCE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,R.WU,S.RICHTER,V.J.ANDERSON,D.MISSIAKAS,A.JOACHIMIAK REVDAT 10 24-JAN-18 3GA9 1 AUTHOR REVDAT 9 02-NOV-11 3GA9 1 AUTHOR KEYWDS REVDAT 8 19-OCT-11 3GA9 1 AUTHOR KEYWDS REVDAT 7 13-JUL-11 3GA9 1 VERSN REVDAT 6 12-JAN-10 3GA9 1 AUTHOR REVDAT 5 15-SEP-09 3GA9 1 JRNL REVDAT 4 25-AUG-09 3GA9 1 AUTHOR REMARK REVDAT 3 18-AUG-09 3GA9 1 AUTHOR JRNL REVDAT 2 21-JUL-09 3GA9 1 REMARK REVDAT 1 16-JUN-09 3GA9 0 JRNL AUTH R.WU,S.RICHTER,R.G.ZHANG,V.J.ANDERSON,D.MISSIAKAS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS TRANSPEPTIDASE JRNL TITL 2 ENZYME CAPD. JRNL REF J.BIOL.CHEM. V. 284 24406 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19535342 JRNL DOI 10.1074/JBC.M109.019034 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 19203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3507 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.403 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3594 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2500 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4837 ; 1.503 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6121 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 8.354 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.349 ;24.570 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 655 ;16.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;12.693 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.218 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3961 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 695 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 869 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2571 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1748 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1894 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2900 ; 0.830 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 937 ; 0.113 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3610 ; 1.016 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1595 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 2.354 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 46 L 119 REMARK 3 RESIDUE RANGE : L 120 L 193 REMARK 3 RESIDUE RANGE : L 194 L 282 REMARK 3 RESIDUE RANGE : L 283 L 335 REMARK 3 RESIDUE RANGE : S 352 S 417 REMARK 3 RESIDUE RANGE : S 420 S 460 REMARK 3 RESIDUE RANGE : S 461 S 527 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6310 67.4690 18.6380 REMARK 3 T TENSOR REMARK 3 T11: -0.2353 T22: -0.3767 REMARK 3 T33: -0.3448 T12: -0.0080 REMARK 3 T13: -0.0319 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 2.5640 L22: 1.9209 REMARK 3 L33: 2.5883 L12: 0.3042 REMARK 3 L13: -0.1998 L23: -0.6331 REMARK 3 S TENSOR REMARK 3 S11: -0.1726 S12: 0.3699 S13: 0.2525 REMARK 3 S21: -0.0741 S22: 0.0150 S23: -0.0655 REMARK 3 S31: -0.0265 S32: 0.0917 S33: 0.1577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22962 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEGS 3350, 0.1M LISO4, 0.1M NA REMARK 280 HEPES PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.85200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.42650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.42650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.85200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE L 29 REMARK 465 ASN L 30 REMARK 465 LYS L 31 REMARK 465 ILE L 32 REMARK 465 LYS L 33 REMARK 465 ASP L 34 REMARK 465 SER L 35 REMARK 465 VAL L 36 REMARK 465 LYS L 37 REMARK 465 GLN L 38 REMARK 465 LYS L 39 REMARK 465 ILE L 40 REMARK 465 ASP L 41 REMARK 465 SER L 42 REMARK 465 MSE L 43 REMARK 465 GLY L 44 REMARK 465 ASP L 45 REMARK 465 ASP L 316 REMARK 465 PRO L 317 REMARK 465 ASN L 318 REMARK 465 TYR L 319 REMARK 465 VAL L 320 REMARK 465 ASN L 321 REMARK 465 ASN L 338 REMARK 465 GLU L 339 REMARK 465 ASN L 340 REMARK 465 GLY L 341 REMARK 465 ASP L 342 REMARK 465 ALA L 343 REMARK 465 LEU L 344 REMARK 465 SER L 345 REMARK 465 GLU L 346 REMARK 465 ALA L 347 REMARK 465 GLU L 348 REMARK 465 HIS L 349 REMARK 465 GLU L 350 REMARK 465 SER L 351 REMARK 465 PHE S 393 REMARK 465 GLY S 394 REMARK 465 SER S 395 REMARK 465 GLU S 396 REMARK 465 GLY S 397 REMARK 465 PHE S 398 REMARK 465 ASN S 399 REMARK 465 SER S 400 REMARK 465 TYR S 401 REMARK 465 LYS S 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO L 324 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS L 124 -145.44 -98.73 REMARK 500 LYS L 283 41.28 -89.92 REMARK 500 GLU L 284 75.41 -10.63 REMARK 500 ASP S 361 32.12 -97.87 REMARK 500 SER S 372 -94.40 74.40 REMARK 500 PRO S 403 -101.56 -29.94 REMARK 500 ALA S 412 70.67 -152.84 REMARK 500 HIS S 446 31.83 -85.05 REMARK 500 LYS S 464 70.25 46.88 REMARK 500 GLU S 507 40.64 -99.31 REMARK 500 ASP S 509 56.98 -167.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU S 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU S 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G9K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS TRANSPEPTIDASE ENZYME CAPD DBREF 3GA9 L 29 351 UNP Q51693 CAPD_BACAN 29 351 DBREF 3GA9 S 352 528 UNP Q51693 CAPD_BACAN 352 528 SEQRES 1 L 323 PHE ASN LYS ILE LYS ASP SER VAL LYS GLN LYS ILE ASP SEQRES 2 L 323 SER MSE GLY ASP LYS GLY THR TYR GLY VAL SER ALA SER SEQRES 3 L 323 HIS PRO LEU ALA VAL GLU GLU GLY MSE LYS VAL LEU LYS SEQRES 4 L 323 ASN GLY GLY SER ALA VAL ASP ALA ALA ILE VAL VAL SER SEQRES 5 L 323 TYR VAL LEU GLY VAL VAL GLU LEU HIS ALA SER GLY ILE SEQRES 6 L 323 GLY GLY GLY GLY GLY MSE LEU ILE ILE SER LYS ASP LYS SEQRES 7 L 323 GLU THR PHE ILE ASP TYR ARG GLU THR THR PRO TYR PHE SEQRES 8 L 323 THR GLY ASN GLN LYS PRO HIS ILE GLY VAL PRO GLY PHE SEQRES 9 L 323 VAL ALA GLY MSE GLU TYR ILE HIS ASP ASN TYR GLY SER SEQRES 10 L 323 LEU PRO MSE GLY GLU LEU LEU GLN PRO ALA ILE ASN TYR SEQRES 11 L 323 ALA GLU LYS GLY PHE LYS VAL ASP ASP SER LEU THR MSE SEQRES 12 L 323 ARG LEU ASP LEU ALA LYS PRO ARG ILE TYR SER ASP LYS SEQRES 13 L 323 LEU SER ILE PHE TYR PRO ASN GLY GLU PRO ILE GLU THR SEQRES 14 L 323 GLY GLU THR LEU ILE GLN THR ASP LEU ALA ARG THR LEU SEQRES 15 L 323 LYS LYS ILE GLN LYS GLU GLY ALA LYS GLY PHE TYR GLU SEQRES 16 L 323 GLY GLY VAL ALA ARG ALA ILE SER LYS THR ALA LYS ILE SEQRES 17 L 323 SER LEU GLU ASP ILE LYS GLY TYR LYS VAL GLU VAL ARG SEQRES 18 L 323 LYS PRO VAL LYS GLY ASN TYR MSE GLY TYR ASP VAL TYR SEQRES 19 L 323 THR ALA PRO PRO PRO PHE SER GLY VAL THR LEU LEU GLN SEQRES 20 L 323 MSE LEU LYS LEU ALA GLU LYS LYS GLU VAL TYR LYS ASP SEQRES 21 L 323 VAL ASP HIS THR ALA THR TYR MSE SER LYS MSE GLU GLU SEQRES 22 L 323 ILE SER ARG ILE ALA TYR GLN ASP ARG LYS LYS ASN LEU SEQRES 23 L 323 GLY ASP PRO ASN TYR VAL ASN MSE ASP PRO ASN LYS MSE SEQRES 24 L 323 VAL SER ASP LYS TYR ILE SER THR MSE LYS ASN GLU ASN SEQRES 25 L 323 GLY ASP ALA LEU SER GLU ALA GLU HIS GLU SER SEQRES 1 S 177 THR THR HIS PHE VAL ILE ILE ASP ARG ASP GLY THR VAL SEQRES 2 S 177 VAL SER SER THR ASN THR LEU SER ASN PHE PHE GLY THR SEQRES 3 S 177 GLY LYS TYR THR ALA GLY PHE PHE LEU ASN ASN GLN LEU SEQRES 4 S 177 GLN ASN PHE GLY SER GLU GLY PHE ASN SER TYR GLU PRO SEQRES 5 S 177 GLY LYS ARG SER ARG THR PHE MSE ALA PRO THR VAL LEU SEQRES 6 S 177 LYS LYS ASP GLY GLU THR ILE GLY ILE GLY SER PRO GLY SEQRES 7 S 177 GLY ASN ARG ILE PRO GLN ILE LEU THR PRO ILE LEU ASP SEQRES 8 S 177 LYS TYR THR HIS GLY LYS GLY SER LEU GLN ASP ILE ILE SEQRES 9 S 177 ASN GLU TYR ARG PHE THR PHE GLU LYS ASN THR ALA TYR SEQRES 10 S 177 THR GLU ILE GLN LEU SER SER GLU VAL LYS ASN GLU LEU SEQRES 11 S 177 SER ARG LYS GLY LEU ASN VAL LYS LYS LYS VAL SER PRO SEQRES 12 S 177 ALA PHE PHE GLY GLY VAL GLN ALA LEU ILE LYS ASP GLU SEQRES 13 S 177 ARG ASP ASN VAL ILE THR GLY ALA GLY ASP GLY ARG ARG SEQRES 14 S 177 ASN GLY THR TRP LYS SER ASN LYS MODRES 3GA9 MSE L 63 MET SELENOMETHIONINE MODRES 3GA9 MSE L 99 MET SELENOMETHIONINE MODRES 3GA9 MSE L 136 MET SELENOMETHIONINE MODRES 3GA9 MSE L 148 MET SELENOMETHIONINE MODRES 3GA9 MSE L 171 MET SELENOMETHIONINE MODRES 3GA9 MSE L 257 MET SELENOMETHIONINE MODRES 3GA9 MSE L 276 MET SELENOMETHIONINE MODRES 3GA9 MSE L 296 MET SELENOMETHIONINE MODRES 3GA9 MSE L 299 MET SELENOMETHIONINE MODRES 3GA9 MSE L 322 MET SELENOMETHIONINE MODRES 3GA9 MSE L 327 MET SELENOMETHIONINE MODRES 3GA9 MSE L 336 MET SELENOMETHIONINE MODRES 3GA9 MSE S 411 MET SELENOMETHIONINE HET MSE L 63 8 HET MSE L 99 8 HET MSE L 136 8 HET MSE L 148 8 HET MSE L 171 8 HET MSE L 257 8 HET MSE L 276 8 HET MSE L 296 8 HET MSE L 299 8 HET MSE L 322 8 HET MSE L 327 8 HET MSE L 336 8 HET MSE S 411 8 HET GLU S 1 9 HET GLU S 2 10 HETNAM MSE SELENOMETHIONINE HETNAM GLU GLUTAMIC ACID FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 5 HOH *79(H2 O) HELIX 1 1 HIS L 55 ASN L 68 1 14 HELIX 2 2 SER L 71 GLU L 87 1 17 HELIX 3 3 GLY L 131 GLY L 144 1 14 HELIX 4 4 PRO L 147 GLY L 162 1 16 HELIX 5 5 ASP L 166 TYR L 181 1 16 HELIX 6 6 SER L 182 SER L 186 5 5 HELIX 7 7 TYR L 189 GLU L 193 5 5 HELIX 8 8 GLN L 203 GLY L 217 1 15 HELIX 9 9 ALA L 218 GLU L 223 1 6 HELIX 10 10 GLU L 223 LYS L 235 1 13 HELIX 11 11 SER L 237 GLY L 243 1 7 HELIX 12 12 SER L 269 LYS L 283 1 15 HELIX 13 13 GLU L 284 VAL L 289 5 6 HELIX 14 14 HIS L 291 LYS L 312 1 22 HELIX 15 15 ASN L 325 VAL L 328 5 4 HELIX 16 16 SER L 329 THR L 335 1 7 HELIX 17 17 GLY S 429 ASN S 431 5 3 HELIX 18 18 ARG S 432 HIS S 446 1 15 HELIX 19 19 SER S 450 GLU S 457 1 8 HELIX 20 20 SER S 474 ARG S 483 1 10 HELIX 21 21 SER S 493 GLY S 498 5 6 HELIX 22 22 ASP S 517 ASN S 521 5 5 SHEET 1 A 7 GLU L 247 ARG L 249 0 SHEET 2 A 7 LYS L 106 ASP L 111 -1 N ASP L 111 O GLU L 247 SHEET 3 A 7 GLY L 96 SER L 103 -1 N MSE L 99 O ILE L 110 SHEET 4 A 7 VAL S 364 THR S 370 -1 O VAL S 364 N ILE L 102 SHEET 5 A 7 THR S 353 ILE S 358 -1 N PHE S 355 O SER S 367 SHEET 6 A 7 GLY L 50 ALA L 53 -1 N SER L 52 O VAL S 356 SHEET 7 A 7 THR S 523 SER S 526 -1 O LYS S 525 N VAL L 51 SHEET 1 B 2 PHE L 163 LYS L 164 0 SHEET 2 B 2 THR L 200 LEU L 201 -1 O LEU L 201 N PHE L 163 SHEET 1 C 6 VAL L 252 TYR L 256 0 SHEET 2 C 6 TYR L 259 THR L 263 -1 O TYR L 259 N TYR L 256 SHEET 3 C 6 THR S 414 LYS S 418 -1 O LYS S 417 N ASP L 260 SHEET 4 C 6 GLU S 421 GLY S 426 -1 O ILE S 423 N LEU S 416 SHEET 5 C 6 GLN S 501 ASP S 506 -1 O LYS S 505 N THR S 422 SHEET 6 C 6 VAL S 511 ALA S 515 -1 O THR S 513 N ILE S 504 SHEET 1 D 2 TYR S 380 THR S 381 0 SHEET 2 D 2 PHE S 384 PHE S 385 -1 O PHE S 384 N THR S 381 SHEET 1 E 3 PHE S 460 GLU S 463 0 SHEET 2 E 3 THR S 466 THR S 469 -1 O TYR S 468 N THR S 461 SHEET 3 E 3 LYS S 489 LYS S 490 1 O LYS S 489 N THR S 469 LINK C GLY L 62 N MSE L 63 1555 1555 1.33 LINK C MSE L 63 N LYS L 64 1555 1555 1.34 LINK C GLY L 98 N MSE L 99 1555 1555 1.34 LINK C MSE L 99 N LEU L 100 1555 1555 1.34 LINK C GLY L 135 N MSE L 136 1555 1555 1.33 LINK C MSE L 136 N GLU L 137 1555 1555 1.33 LINK C PRO L 147 N MSE L 148 1555 1555 1.32 LINK C MSE L 148 N GLY L 149 1555 1555 1.34 LINK C THR L 170 N MSE L 171 1555 1555 1.33 LINK C MSE L 171 N ARG L 172 1555 1555 1.34 LINK C TYR L 256 N MSE L 257 1555 1555 1.33 LINK C MSE L 257 N GLY L 258 1555 1555 1.34 LINK C GLN L 275 N MSE L 276 1555 1555 1.34 LINK C MSE L 276 N LEU L 277 1555 1555 1.33 LINK C TYR L 295 N MSE L 296 1555 1555 1.33 LINK C MSE L 296 N SER L 297 1555 1555 1.33 LINK C LYS L 298 N MSE L 299 1555 1555 1.34 LINK C MSE L 299 N GLU L 300 1555 1555 1.33 LINK C MSE L 322 N ASP L 323 1555 1555 1.35 LINK C LYS L 326 N MSE L 327 1555 1555 1.33 LINK C MSE L 327 N VAL L 328 1555 1555 1.32 LINK C THR L 335 N MSE L 336 1555 1555 1.34 LINK C MSE L 336 N LYS L 337 1555 1555 1.35 LINK C PHE S 410 N MSE S 411 1555 1555 1.33 LINK C MSE S 411 N ALA S 412 1555 1555 1.34 LINK C GLU S 1 N GLU S 2 1555 1555 1.33 CISPEP 1 LYS L 46 GLY L 47 0 -0.25 CISPEP 2 ASN L 122 GLN L 123 0 9.84 CISPEP 3 GLN L 123 LYS L 124 0 14.55 CISPEP 4 PRO L 266 PRO L 267 0 6.78 CISPEP 5 ARG S 508 ASP S 509 0 4.48 CISPEP 6 ASP S 509 ASN S 510 0 1.06 SITE 1 AC1 4 GLU S 2 GLY S 430 ASN S 431 ARG S 432 SITE 1 AC2 8 GLU S 1 THR S 352 SER S 372 PHE S 374 SITE 2 AC2 8 PRO S 428 GLY S 429 GLY S 430 ARG S 520 CRYST1 47.704 72.000 128.853 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020963 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007761 0.00000