HEADER TRANSFERASE 05-FEB-09 3G5S TITLE CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRMFO IN COMPLEX WITH TITLE 2 GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLENETETRAHYDROFOLATE--TRNA-(URACIL-5-)- COMPND 3 METHYLTRANSFERASE TRMFO; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRMFO, FOLATE-DEPENDENT TRNA (URACIL-5-)-METHYLTRANSFERASE, COMPND 6 FOLATE-DEPENDENT TRNA(M-5-U54)-METHYLTRANSFERASE; COMPND 7 EC: 2.1.1.74; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TRMFO, TTHA1442; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11 KEYWDS TRNA METHYLTRANSFERASE FAD FOLATE, FAD, FLAVOPROTEIN, KEYWDS 2 METHYLTRANSFERASE, TRANSFERASE, TRNA PROCESSING EXPDTA X-RAY DIFFRACTION AUTHOR H.NISHIMASU,R.ISHITANI,H.HORI,O.NUREKI REVDAT 3 14-DEC-11 3G5S 1 HETATM HETNAM VERSN REVDAT 2 26-MAY-09 3G5S 1 JRNL REVDAT 1 19-MAY-09 3G5S 0 JRNL AUTH H.NISHIMASU,R.ISHITANI,K.YAMASHITA,C.IWASHITA,A.HIRATA, JRNL AUTH 2 H.HORI,O.NUREKI JRNL TITL ATOMIC STRUCTURE OF A FOLATE/FAD-DEPENDENT TRNA T54 JRNL TITL 2 METHYLTRANSFERASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 8180 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19416846 JRNL DOI 10.1073/PNAS.0901330106 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 209897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 19458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8495 - 3.2620 1.00 13316 688 0.1713 0.1962 REMARK 3 2 3.2620 - 2.5892 1.00 13313 715 0.1831 0.1872 REMARK 3 3 2.5892 - 2.2620 1.00 13244 714 0.1726 0.1859 REMARK 3 4 2.2620 - 2.0552 1.00 13295 769 0.1608 0.1774 REMARK 3 5 2.0552 - 1.9079 0.99 13209 689 0.1514 0.1779 REMARK 3 6 1.9079 - 1.7954 0.98 13168 622 0.1489 0.1623 REMARK 3 7 1.7954 - 1.7055 0.98 13175 620 0.1379 0.1576 REMARK 3 8 1.7055 - 1.6312 0.98 12980 752 0.1305 0.1502 REMARK 3 9 1.6312 - 1.5684 0.98 13008 700 0.1229 0.1462 REMARK 3 10 1.5684 - 1.5143 0.98 13004 640 0.1225 0.1275 REMARK 3 11 1.5143 - 1.4669 0.97 12852 715 0.1214 0.1379 REMARK 3 12 1.4669 - 1.4250 0.97 12882 701 0.1257 0.1325 REMARK 3 13 1.4250 - 1.3875 0.96 12804 682 0.1249 0.1596 REMARK 3 14 1.3875 - 1.3536 0.95 12645 721 0.1312 0.1419 REMARK 3 15 1.3536 - 1.3229 0.95 12603 720 0.1313 0.1491 REMARK 3 16 1.3229 - 1.2947 0.95 12627 637 0.1403 0.1561 REMARK 3 17 1.2947 - 1.2688 0.94 12530 637 0.1447 0.1713 REMARK 3 18 1.2688 - 1.2449 0.94 12502 665 0.1523 0.1787 REMARK 3 19 1.2449 - 1.2226 0.93 12351 694 0.1585 0.1678 REMARK 3 20 1.2226 - 1.2019 0.92 12280 611 0.1653 0.1686 REMARK 3 21 1.2019 - 1.1825 0.91 12173 615 0.1686 0.1894 REMARK 3 22 1.1825 - 1.1643 0.91 12143 663 0.1743 0.1945 REMARK 3 23 1.1643 - 1.1472 0.89 11820 617 0.1820 0.1973 REMARK 3 24 1.1472 - 1.1310 0.88 11804 514 0.1897 0.1988 REMARK 3 25 1.1310 - 1.1157 0.86 11400 618 0.1992 0.2082 REMARK 3 26 1.1157 - 1.1013 0.83 11053 578 0.2054 0.2079 REMARK 3 27 1.1013 - 1.0875 0.79 10465 617 0.2183 0.2221 REMARK 3 28 1.0875 - 1.0744 0.76 10152 541 0.2303 0.2345 REMARK 3 29 1.0744 - 1.0619 0.72 9617 519 0.2429 0.2433 REMARK 3 30 1.0619 - 1.0500 0.65 8553 484 0.2489 0.2489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 49.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70500 REMARK 3 B22 (A**2) : -4.35700 REMARK 3 B33 (A**2) : -1.58600 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3515 REMARK 3 ANGLE : 1.179 4774 REMARK 3 CHIRALITY : 0.082 506 REMARK 3 PLANARITY : 0.014 624 REMARK 3 DIHEDRAL : 17.189 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-09. REMARK 100 THE RCSB ID CODE IS RCSB051458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-08; 30-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; PHOTON FACTORY REMARK 200 BEAMLINE : BL41XU; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000; 0.9793 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 209948 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 43.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 3350, 0.1M MAGNESIUM CHLORIDE, REMARK 280 0.05M TRIS-HCL (PH 8.5), 10MM REDUCED-GLUTATHIONE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.12850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.25050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.11300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.25050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.12850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.11300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 181 REMARK 465 GLN A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 ASP A 185 REMARK 465 ASP A 213 REMARK 465 TRP A 214 REMARK 465 GLU A 215 REMARK 465 LYS A 216 REMARK 465 LEU A 217 REMARK 465 GLU A 218 REMARK 465 PHE A 219 REMARK 465 ARG A 437 REMARK 465 PRO A 438 REMARK 465 GLU A 439 REMARK 465 ALA A 440 REMARK 465 ALA A 441 REMARK 465 LEU A 442 REMARK 465 VAL A 443 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 48.62 -109.53 REMARK 500 CYS A 51 -121.73 -137.17 REMARK 500 ALA A 89 40.95 -159.69 REMARK 500 ALA A 132 52.73 -145.59 REMARK 500 ALA A 159 59.15 -147.68 REMARK 500 ASN A 310 102.87 -169.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 220 GLU A 221 -133.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 221 20.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 472 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 446 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 391 OE1 REMARK 620 2 HOH A 634 O 87.2 REMARK 620 3 HOH A 637 O 176.2 96.4 REMARK 620 4 HOH A 635 O 82.9 169.0 93.5 REMARK 620 5 HOH A 636 O 84.9 96.2 93.6 87.7 REMARK 620 6 GSH A 445 O32 90.1 86.3 91.2 88.9 174.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 445 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G5Q RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 3G5R RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 1.6 A RESOLUTION DBREF 3G5S A 1 443 UNP Q5SID2 TRMFO_THET8 1 443 SEQRES 1 A 443 MSE GLU ARG VAL ASN VAL VAL GLY ALA GLY LEU ALA GLY SEQRES 2 A 443 SER GLU ALA ALA TRP THR LEU LEU ARG LEU GLY VAL PRO SEQRES 3 A 443 VAL ARG LEU PHE GLU MSE ARG PRO LYS ARG MSE THR PRO SEQRES 4 A 443 ALA HIS GLY THR ASP ARG PHE ALA GLU ILE VAL CYS SER SEQRES 5 A 443 ASN SER LEU GLY GLY GLU GLY GLU THR ASN ALA LYS GLY SEQRES 6 A 443 LEU LEU GLN ALA GLU MSE ARG ARG ALA GLY SER LEU VAL SEQRES 7 A 443 MSE GLU ALA ALA ASP LEU ALA ARG VAL PRO ALA GLY GLY SEQRES 8 A 443 ALA LEU ALA VAL ASP ARG GLU GLU PHE SER GLY TYR ILE SEQRES 9 A 443 THR GLU ARG LEU THR GLY HIS PRO LEU LEU GLU VAL VAL SEQRES 10 A 443 ARG GLU GLU VAL ARG GLU ILE PRO PRO GLY ILE THR VAL SEQRES 11 A 443 LEU ALA THR GLY PRO LEU THR SER GLU ALA LEU ALA GLU SEQRES 12 A 443 ALA LEU LYS ARG ARG PHE GLY ASP HIS PHE LEU ALA TYR SEQRES 13 A 443 TYR ASP ALA ALA SER PRO ILE VAL LEU TYR GLU SER ILE SEQRES 14 A 443 ASP LEU THR LYS CYS PHE ARG ALA GLY ARG TYR GLY GLN SEQRES 15 A 443 SER ALA ASP TYR LEU ASN CYS PRO MSE THR GLU GLU GLU SEQRES 16 A 443 TYR ARG ARG PHE HIS GLN ALA LEU LEU GLU ALA GLN ARG SEQRES 17 A 443 HIS THR PRO HIS ASP TRP GLU LYS LEU GLU PHE PHE GLU SEQRES 18 A 443 ALA CYS VAL PRO VAL GLU GLU LEU ALA ARG ARG GLY TYR SEQRES 19 A 443 GLN THR LEU LEU PHE GLY PRO MSE LYS PRO VAL GLY LEU SEQRES 20 A 443 VAL ASP PRO ARG THR GLY LYS GLU PRO PHE ALA VAL VAL SEQRES 21 A 443 GLN LEU ARG GLN GLU ASP LYS ALA GLY ARG MSE TRP SER SEQRES 22 A 443 LEU VAL GLY PHE GLN THR GLY LEU LYS TRP PRO GLU GLN SEQRES 23 A 443 LYS ARG LEU ILE GLN MSE ILE PRO GLY LEU GLU ASN ALA SEQRES 24 A 443 GLU ILE VAL ARG TYR GLY VAL MSE HIS ARG ASN THR TYR SEQRES 25 A 443 LEU ASN ALA PRO ARG LEU LEU GLY GLU THR LEU GLU PHE SEQRES 26 A 443 ARG GLU ALA GLU GLY LEU TYR ALA ALA GLY VAL LEU ALA SEQRES 27 A 443 GLY VAL GLU GLY TYR LEU GLU SER ALA ALA THR GLY PHE SEQRES 28 A 443 LEU ALA GLY LEU ASN ALA ALA ARG LYS ALA LEU GLY LEU SEQRES 29 A 443 PRO PRO VAL ALA PRO PRO GLU GLU SER MSE LEU GLY GLY SEQRES 30 A 443 LEU VAL ARG TYR LEU ALA THR ALA ASN PRO GLU GLY PHE SEQRES 31 A 443 GLN PRO MSE TYR ALA ASN TRP GLY LEU VAL PRO PRO VAL SEQRES 32 A 443 GLU GLY ARG MSE GLY LYS LYS GLU LYS ARG GLN ALA MSE SEQRES 33 A 443 TYR ARG ARG GLY LEU GLU ALA PHE SER ALA TRP LEU SER SEQRES 34 A 443 GLY LEU ASN PRO PRO LEU PRO ARG PRO GLU ALA ALA LEU SEQRES 35 A 443 VAL MODRES 3G5S MSE A 1 MET SELENOMETHIONINE MODRES 3G5S MSE A 32 MET SELENOMETHIONINE MODRES 3G5S MSE A 37 MET SELENOMETHIONINE MODRES 3G5S MSE A 71 MET SELENOMETHIONINE MODRES 3G5S MSE A 79 MET SELENOMETHIONINE MODRES 3G5S MSE A 191 MET SELENOMETHIONINE MODRES 3G5S MSE A 242 MET SELENOMETHIONINE MODRES 3G5S MSE A 271 MET SELENOMETHIONINE MODRES 3G5S MSE A 292 MET SELENOMETHIONINE MODRES 3G5S MSE A 307 MET SELENOMETHIONINE MODRES 3G5S MSE A 374 MET SELENOMETHIONINE MODRES 3G5S MSE A 393 MET SELENOMETHIONINE MODRES 3G5S MSE A 407 MET SELENOMETHIONINE MODRES 3G5S MSE A 416 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 32 8 HET MSE A 37 8 HET MSE A 71 8 HET MSE A 79 8 HET MSE A 191 16 HET MSE A 242 8 HET MSE A 271 8 HET MSE A 292 8 HET MSE A 307 8 HET MSE A 374 8 HET MSE A 393 8 HET MSE A 407 8 HET MSE A 416 8 HET FAD A 444 53 HET GSH A 445 20 HET MG A 446 1 HET EDO A 447 4 HET EDO A 448 4 HET EDO A 449 4 HET EDO A 450 4 HET EDO A 451 4 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GSH GLUTATHIONE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 MG MG 2+ FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 HOH *641(H2 O) HELIX 1 1 GLY A 10 LEU A 23 1 14 HELIX 2 2 ASN A 62 GLY A 75 1 14 HELIX 3 3 SER A 76 ALA A 85 1 10 HELIX 4 4 ASP A 96 GLY A 110 1 15 HELIX 5 5 SER A 138 GLY A 150 1 13 HELIX 6 6 GLU A 167 ILE A 169 5 3 HELIX 7 7 ASP A 170 CYS A 174 5 5 HELIX 8 8 THR A 192 ALA A 206 1 15 HELIX 9 9 PRO A 225 ARG A 232 1 8 HELIX 10 10 GLN A 235 GLY A 240 1 6 HELIX 11 11 LYS A 282 GLN A 291 1 10 HELIX 12 12 ASN A 314 LEU A 319 1 6 HELIX 13 13 GLY A 335 GLY A 339 5 5 HELIX 14 14 GLY A 342 LEU A 362 1 21 HELIX 15 15 SER A 373 ALA A 385 1 13 HELIX 16 16 ASN A 396 VAL A 400 5 5 HELIX 17 17 GLY A 408 GLY A 430 1 23 SHEET 1 A 6 LEU A 114 VAL A 117 0 SHEET 2 A 6 VAL A 27 PHE A 30 1 N LEU A 29 O GLU A 115 SHEET 3 A 6 VAL A 4 VAL A 7 1 N VAL A 6 O PHE A 30 SHEET 4 A 6 THR A 129 LEU A 131 1 O VAL A 130 N VAL A 7 SHEET 5 A 6 ALA A 328 ALA A 333 1 O TYR A 332 N LEU A 131 SHEET 6 A 6 GLU A 324 PHE A 325 -1 N PHE A 325 O LEU A 331 SHEET 1 B 3 SER A 54 GLY A 57 0 SHEET 2 B 3 ALA A 92 VAL A 95 -1 O LEU A 93 N LEU A 55 SHEET 3 B 3 ARG A 86 VAL A 87 -1 N VAL A 87 O ALA A 94 SHEET 1 C 2 LEU A 154 ALA A 160 0 SHEET 2 C 2 VAL A 306 LEU A 313 -1 O TYR A 312 N ALA A 155 SHEET 1 D 6 PHE A 175 ARG A 176 0 SHEET 2 D 6 LEU A 187 MSE A 191 -1 O ASN A 188 N PHE A 175 SHEET 3 D 6 ALA A 258 GLN A 264 -1 O VAL A 260 N CYS A 189 SHEET 4 D 6 MSE A 271 LEU A 274 -1 O SER A 273 N ARG A 263 SHEET 5 D 6 ILE A 163 LEU A 165 -1 N VAL A 164 O TRP A 272 SHEET 6 D 6 ILE A 301 ARG A 303 -1 O ARG A 303 N ILE A 163 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C GLU A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N ARG A 33 1555 1555 1.33 LINK C ARG A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N THR A 38 1555 1555 1.33 LINK C GLU A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N ARG A 72 1555 1555 1.34 LINK C VAL A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLU A 80 1555 1555 1.33 LINK C PRO A 190 N AMSE A 191 1555 1555 1.33 LINK C PRO A 190 N BMSE A 191 1555 1555 1.33 LINK C AMSE A 191 N THR A 192 1555 1555 1.33 LINK C BMSE A 191 N THR A 192 1555 1555 1.33 LINK C PRO A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N LYS A 243 1555 1555 1.33 LINK C ARG A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N TRP A 272 1555 1555 1.33 LINK C GLN A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N ILE A 293 1555 1555 1.33 LINK C VAL A 306 N MSE A 307 1555 1555 1.33 LINK C MSE A 307 N HIS A 308 1555 1555 1.32 LINK C SER A 373 N MSE A 374 1555 1555 1.32 LINK C MSE A 374 N LEU A 375 1555 1555 1.33 LINK C PRO A 392 N MSE A 393 1555 1555 1.33 LINK C MSE A 393 N TYR A 394 1555 1555 1.33 LINK C ARG A 406 N MSE A 407 1555 1555 1.33 LINK C MSE A 407 N GLY A 408 1555 1555 1.33 LINK C ALA A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N TYR A 417 1555 1555 1.32 LINK OE1BGLN A 391 MG MG A 446 1555 1555 2.18 LINK MG MG A 446 O HOH A 634 1555 1555 2.27 LINK MG MG A 446 O HOH A 637 1555 1555 2.42 LINK MG MG A 446 O HOH A 635 1555 1555 2.33 LINK MG MG A 446 O HOH A 636 1555 1555 2.27 LINK O32 GSH A 445 MG MG A 446 1555 1555 2.12 CISPEP 1 ARG A 33 PRO A 34 0 4.15 CISPEP 2 ASN A 432 PRO A 433 0 4.45 SITE 1 AC1 34 GLY A 8 GLY A 10 LEU A 11 ALA A 12 SITE 2 AC1 34 GLU A 31 MSE A 32 ARG A 33 THR A 38 SITE 3 AC1 34 HIS A 41 CYS A 51 SER A 52 GLU A 119 SITE 4 AC1 34 GLU A 120 VAL A 121 ALA A 132 THR A 133 SITE 5 AC1 34 GLY A 134 PRO A 135 SER A 138 HIS A 212 SITE 6 AC1 34 GLY A 335 VAL A 336 GLU A 341 GLY A 342 SITE 7 AC1 34 TYR A 343 SER A 346 HOH A 642 HOH A 644 SITE 8 AC1 34 HOH A 658 HOH A 659 HOH A 665 HOH A 682 SITE 9 AC1 34 HOH A 696 HOH A 752 SITE 1 AC2 17 TYR A 157 ASP A 158 ALA A 159 SER A 161 SITE 2 AC2 17 CYS A 223 LEU A 274 GLY A 276 GLN A 278 SITE 3 AC2 17 TYR A 312 GLN A 391 MG A 446 EDO A 448 SITE 4 AC2 17 HOH A 484 HOH A 487 HOH A 489 HOH A 634 SITE 5 AC2 17 HOH A 637 SITE 1 AC3 6 GLN A 391 GSH A 445 HOH A 634 HOH A 635 SITE 2 AC3 6 HOH A 636 HOH A 637 SITE 1 AC4 5 GLU A 324 PHE A 325 ARG A 326 GLU A 329 SITE 2 AC4 5 HOH A 809 SITE 1 AC5 6 HIS A 152 PHE A 153 ASN A 314 PHE A 390 SITE 2 AC5 6 GSH A 445 HOH A1087 SITE 1 AC6 6 GLU A 265 ASP A 266 LYS A 267 THR A 384 SITE 2 AC6 6 ALA A 385 ASN A 386 SITE 1 AC7 4 LEU A 165 GLU A 300 TRP A 397 ARG A 413 SITE 1 AC8 7 LEU A 23 GLY A 24 PHE A 239 LYS A 243 SITE 2 AC8 7 LEU A 362 HOH A 578 HOH A 938 CRYST1 48.257 92.226 104.501 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009569 0.00000