HEADER IMMUNE SYSTEM 02-JUN-08 3DBX TITLE STRUCTURE OF CHICKEN CD1-2 WITH BOUND FATTY ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD1-2 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN OF CHICKEN CD1-2, UNP RESIDUES 20-302; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CD1-2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS SHUTTLE VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBACPHP10; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS SHUTTLE VECTOR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PBACPHP10 KEYWDS CD1, EVOLUTION, ANTIGEN-PRESENTATION, MHC-FOLD, HYDROPHOBIC BINDING KEYWDS 2 GROOVE, IMMUNOGLOBULIN DOMAIN, MEMBRANE, TRANSMEMBRANE, DISEASE KEYWDS 3 MUTATION, GLYCATION, GLYCOPROTEIN, IMMUNE RESPONSE, MHC I, KEYWDS 4 PYRROLIDONE CARBOXYLIC ACID, SECRETED, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.M.ZAJONC,I.A.WILSON REVDAT 6 29-JUL-20 3DBX 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 13-JUL-11 3DBX 1 VERSN REVDAT 4 09-JUN-09 3DBX 1 REVDAT REVDAT 3 24-FEB-09 3DBX 1 VERSN REVDAT 2 02-DEC-08 3DBX 1 JRNL REVDAT 1 25-NOV-08 3DBX 0 JRNL AUTH D.M.ZAJONC,H.STRIEGL,C.C.DASCHER,I.A.WILSON JRNL TITL THE CRYSTAL STRUCTURE OF AVIAN CD1 REVEALS A SMALLER, MORE JRNL TITL 2 PRIMORDIAL ANTIGEN-BINDING POCKET COMPARED TO MAMMALIAN CD1 JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 17925 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19004781 JRNL DOI 10.1073/PNAS.0809814105 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 25747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.245 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3150 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4294 ; 1.576 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;37.021 ;22.754 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;15.208 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;23.961 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2369 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1210 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2095 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1960 ; 0.950 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3080 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1371 ; 2.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1214 ; 2.971 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 183 REMARK 3 RESIDUE RANGE : A 500 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5508 54.4005 32.5367 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0254 REMARK 3 T33: -0.1450 T12: 0.0409 REMARK 3 T13: -0.0752 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 2.6669 L22: 8.2790 REMARK 3 L33: 4.8542 L12: -1.8318 REMARK 3 L13: -0.1351 L23: 0.4468 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: 0.4154 S13: -0.2782 REMARK 3 S21: -1.2645 S22: -0.1788 S23: 0.3953 REMARK 3 S31: -0.4877 S32: -0.7518 S33: 0.0667 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6257 39.4460 65.3062 REMARK 3 T TENSOR REMARK 3 T11: -0.2598 T22: -0.2235 REMARK 3 T33: -0.1624 T12: -0.0622 REMARK 3 T13: 0.0077 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.0048 L22: 3.4239 REMARK 3 L33: 12.5015 L12: 0.2378 REMARK 3 L13: -0.9049 L23: 3.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: -0.1136 S13: -0.0068 REMARK 3 S21: 0.3324 S22: -0.2693 S23: 0.0867 REMARK 3 S31: 0.2529 S32: -0.9914 S33: 0.1103 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3015 57.3507 56.2204 REMARK 3 T TENSOR REMARK 3 T11: -0.2433 T22: -0.3289 REMARK 3 T33: -0.1996 T12: 0.0003 REMARK 3 T13: 0.0069 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 6.6947 L22: 2.5797 REMARK 3 L33: 5.5496 L12: -1.5154 REMARK 3 L13: 3.2104 L23: -0.3006 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: -0.0668 S13: 0.1217 REMARK 3 S21: -0.1414 S22: -0.0183 S23: -0.0942 REMARK 3 S31: -0.1610 S32: 0.0212 S33: 0.0914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MHE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 0.1M SODIUM CITRATE, 10% REMARK 280 ISOPROPANOL, PH5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.34650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.07700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.07700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.17325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.07700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.07700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.51975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.07700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.07700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.17325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.07700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.07700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.51975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.34650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 CYS A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 THR A 64 OG1 CG2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 154 CG ASP A 154 OD1 0.355 REMARK 500 ASP A 154 CG ASP A 154 OD2 0.241 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -169.24 -127.72 REMARK 500 ALA A 36 -123.30 49.87 REMARK 500 GLU A 59 33.84 -81.59 REMARK 500 ALA A 62 -95.00 65.51 REMARK 500 LEU A 126 -57.21 -126.73 REMARK 500 SER A 168 -55.90 -126.12 REMARK 500 ASP A 226 17.88 51.91 REMARK 500 TRP B 60 -2.96 77.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 3DBX A 1 283 UNP Q5GL29 Q5GL29_CHICK 20 302 DBREF 3DBX B 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 3DBX HIS A 284 UNP Q5GL29 EXPRESSION TAG SEQADV 3DBX HIS A 285 UNP Q5GL29 EXPRESSION TAG SEQADV 3DBX HIS A 286 UNP Q5GL29 EXPRESSION TAG SEQADV 3DBX HIS A 287 UNP Q5GL29 EXPRESSION TAG SEQADV 3DBX HIS A 288 UNP Q5GL29 EXPRESSION TAG SEQADV 3DBX HIS A 289 UNP Q5GL29 EXPRESSION TAG SEQRES 1 A 289 GLU THR SER CYS PRO PRO PRO GLU GLU SER GLN PHE PHE SEQRES 2 A 289 GLN LEU PHE TYR THR LEU LEU LEU GLY ASN VAL SER SER SEQRES 3 A 289 THR GLU LEU THR GLY MET ALA LEU LEU ALA ASP VAL PRO SEQRES 4 A 289 ILE MET VAL LEU ASP PRO HIS THR TRP ASN LEU ASN ILE SEQRES 5 A 289 CYS ARG PRO TRP VAL GLN GLU ILE THR ALA GLU THR GLU SEQRES 6 A 289 VAL LYS LYS ILE LEU SER PHE SER MET VAL GLY ILE ARG SEQRES 7 A 289 ASN THR ILE ARG PHE MET HIS GLU MET THR ALA LYS ALA SEQRES 8 A 289 GLY LEU ASP TYR PRO ARG VAL PHE GLN ILE HIS THR GLY SEQRES 9 A 289 CYS LYS LEU TYR THR ASN GLY THR ARG TRP SER PHE VAL SEQRES 10 A 289 ASN ILE GLY GLU GLY GLY ARG ASP LEU VAL THR TYR GLU SEQRES 11 A 289 LEU SER ARG GLU ARG TRP VAL PRO GLN ARG SER THR LEU SEQRES 12 A 289 LEU ALA LYS VAL MET SER ASN THR LEU THR ASP LEU ARG SEQRES 13 A 289 ALA VAL SER GLY PHE LEU GLU HIS ILE PHE SER SER SER SEQRES 14 A 289 PHE PRO ASN TYR ILE LEU MET LEU HIS GLU GLU GLY ARG SEQRES 15 A 289 THR ASP LEU GLU ARG ARG VAL PRO PRO MET ALA VAL VAL SEQRES 16 A 289 PHE ALA ARG THR ALA GLY GLN VAL GLN LEU LEU LEU VAL SEQRES 17 A 289 CYS ARG VAL THR SER PHE TYR PRO ARG PRO ILE ALA VAL SEQRES 18 A 289 THR TRP LEU ARG ASP GLY ARG GLU VAL PRO PRO SER PRO SEQRES 19 A 289 ALA LEU SER THR GLY THR VAL LEU PRO ASN ALA ASP LEU SEQRES 20 A 289 THR TYR GLN LEU ARG SER THR LEU LEU VAL SER PRO GLN SEQRES 21 A 289 ASP GLY HIS GLY TYR ALA CYS ARG VAL GLN HIS CYS SER SEQRES 22 A 289 LEU GLY ASP ARG SER LEU LEU VAL PRO TRP HIS HIS HIS SEQRES 23 A 289 HIS HIS HIS SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET MODRES 3DBX ASN A 23 ASN GLYCOSYLATION SITE MODRES 3DBX ASN A 51 ASN GLYCOSYLATION SITE MODRES 3DBX ASN A 110 ASN GLYCOSYLATION SITE HET NAG A 500 14 HET NAG A 511 14 HET NAG A 521 14 HET PLM A 522 18 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PLM PALMITIC ACID FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 PLM C16 H32 O2 FORMUL 7 HOH *149(H2 O) HELIX 1 1 GLU A 65 PHE A 72 1 8 HELIX 2 2 GLY A 76 LYS A 90 1 15 HELIX 3 3 THR A 142 LEU A 155 1 14 HELIX 4 4 LEU A 155 SER A 168 1 14 HELIX 5 5 SER A 168 GLY A 181 1 14 HELIX 6 6 GLY A 181 GLU A 186 1 6 HELIX 7 7 HIS A 271 GLY A 275 5 5 SHEET 1 A 8 LEU A 50 ILE A 52 0 SHEET 2 A 8 VAL A 38 LEU A 43 -1 N VAL A 42 O ASN A 51 SHEET 3 A 8 THR A 27 LEU A 35 -1 N ALA A 33 O ILE A 40 SHEET 4 A 8 PHE A 12 LEU A 21 -1 N GLN A 14 O LEU A 34 SHEET 5 A 8 ARG A 97 LEU A 107 -1 O CYS A 105 N PHE A 13 SHEET 6 A 8 ARG A 113 GLU A 121 -1 O ASN A 118 N HIS A 102 SHEET 7 A 8 ARG A 124 GLU A 130 -1 O VAL A 127 N ILE A 119 SHEET 8 A 8 ARG A 135 PRO A 138 -1 O VAL A 137 N THR A 128 SHEET 1 B 4 MET A 192 ALA A 200 0 SHEET 2 B 4 GLN A 204 PHE A 214 -1 O LEU A 206 N ARG A 198 SHEET 3 B 4 TYR A 249 VAL A 257 -1 O VAL A 257 N LEU A 205 SHEET 4 B 4 LEU A 236 THR A 238 -1 N SER A 237 O THR A 254 SHEET 1 C 4 MET A 192 ALA A 200 0 SHEET 2 C 4 GLN A 204 PHE A 214 -1 O LEU A 206 N ARG A 198 SHEET 3 C 4 TYR A 249 VAL A 257 -1 O VAL A 257 N LEU A 205 SHEET 4 C 4 LEU A 242 PRO A 243 -1 N LEU A 242 O GLN A 250 SHEET 1 D 4 ARG A 228 GLU A 229 0 SHEET 2 D 4 ALA A 220 ARG A 225 -1 N ARG A 225 O ARG A 228 SHEET 3 D 4 TYR A 265 GLN A 270 -1 O ARG A 268 N THR A 222 SHEET 4 D 4 LEU A 279 PRO A 282 -1 O VAL A 281 N CYS A 267 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SSBOND 1 CYS A 209 CYS A 267 1555 1555 1.98 SSBOND 2 CYS B 25 CYS B 80 1555 1555 2.02 LINK ND2 ASN A 23 C1 NAG A 500 1555 1555 1.45 LINK ND2 ASN A 51 C1 NAG A 511 1555 1555 1.47 LINK ND2 ASN A 110 C1 NAG A 521 1555 1555 1.45 CISPEP 1 THR A 61 ALA A 62 0 -6.98 CISPEP 2 TYR A 95 PRO A 96 0 -3.58 CISPEP 3 TYR A 215 PRO A 216 0 3.47 CISPEP 4 HIS B 31 PRO B 32 0 0.73 CRYST1 92.154 92.154 96.693 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010342 0.00000