HEADER IMMUNE SYSTEM 01-FEB-08 3C5S TITLE CRYSTAL STRUCTURE OF MONOCLONAL FAB F22-4 SPECIFIC FOR TITLE 2 SHIGELLA FLEXNERI 2A O-AG COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB F22-4 LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FAB F22-4 HEAVY CHAIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: BALB/C KEYWDS ANTIBODY, O-ANTIGEN, LPS, SHIGELLA FLEXNERI, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.A.SAUL,B.VULLIEZ-LE-NORMAND,G.A.BENTLEY REVDAT 3 24-FEB-09 3C5S 1 VERSN REVDAT 2 05-AUG-08 3C5S 1 JRNL REVDAT 1 01-JUL-08 3C5S 0 JRNL AUTH B.VULLIEZ-LE NORMAND,F.A.SAUL,A.PHALIPON,F.BELOT, JRNL AUTH 2 C.GUERREIRO,L.A.MULARD,G.A.BENTLEY JRNL TITL STRUCTURES OF SYNTHETIC O-ANTIGEN FRAGMENTS FROM JRNL TITL 2 SEROTYPE 2A SHIGELLA FLEXNERI IN COMPLEX WITH A JRNL TITL 3 PROTECTIVE MONOCLONAL ANTIBODY JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 9976 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18621718 JRNL DOI 10.1073/PNAS.0801711105 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 50671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 40 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 1.93000 REMARK 3 B13 (A**2) : -1.83000 REMARK 3 B23 (A**2) : -0.88000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6652 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5812 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9059 ; 1.484 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13604 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 833 ; 6.540 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;37.887 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1074 ;14.807 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.261 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1022 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7332 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1124 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5885 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3156 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4049 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 380 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.248 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4460 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1700 ; 0.268 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6815 ; 2.123 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2789 ; 1.781 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2244 ; 2.397 ; 4.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3C5S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB046376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND(111), GE(220), REMARK 200 SAGITALLY FOCUSING GE(220), REMARK 200 MULTILAYER REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 72.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : 0.14400 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: VL/VH DIMER: PDB ENTRY 1EJO RESIDUES 2002L- REMARK 200 2109L; PDB ENTRY 1AJ4 RESIDUES 1H-99H; CL/CH DIMER: PDB ENTRY REMARK 200 1F11 RESIDUES 108A-211A AND 114B-227B. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 2000 MME, 190MM MGCL2, 50MM REMARK 280 SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 214 REMARK 465 LEU B 27 REMARK 465 THR B 28 REMARK 465 PHE B 29 REMARK 465 LEU B 52A REMARK 465 LYS B 52B REMARK 465 SER B 52C REMARK 465 ASP B 53 REMARK 465 ASN B 54 REMARK 465 TYR B 55 REMARK 465 ALA B 56 REMARK 465 GLY B 127 REMARK 465 SER B 130 REMARK 465 ALA B 131 REMARK 465 ALA B 132 REMARK 465 GLN B 133 REMARK 465 THR B 134 REMARK 465 ASN B 135 REMARK 465 ASP B 216 REMARK 465 CYS B 217 REMARK 465 GLU C 213 REMARK 465 CYS C 214 REMARK 465 GLY D 127 REMARK 465 SER D 130 REMARK 465 ALA D 131 REMARK 465 ALA D 132 REMARK 465 GLN D 133 REMARK 465 THR D 134 REMARK 465 ASN D 135 REMARK 465 ASP D 216 REMARK 465 CYS D 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 1 CG CD OE1 OE2 REMARK 470 LEU B 78 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN C 212 O HOH C 348 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS C 183 O HOH B 225 1556 2.16 REMARK 500 OG SER D 113 OE2 GLU D 193 1655 2.17 REMARK 500 O HOH D 322 O HOH D 440 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 1 CD GLU D 1 OE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 51 -51.10 70.19 REMARK 500 SER B 158 29.73 45.83 REMARK 500 LEU C 51 -41.73 79.22 REMARK 500 ARG C 77 67.39 33.97 REMARK 500 GLU C 81 -2.49 -51.30 REMARK 500 ARG D 52 -161.03 -100.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BZ4 RELATED DB: PDB REMARK 900 FAB F22-4 IN COMPLEX WITH A SHIGELLA FLEXNERI 2A O-AG REMARK 900 DECASACCHARIDE REMARK 900 RELATED ID: 3C6S RELATED DB: PDB REMARK 900 FAB F22-4 IN COMPLEX WITH A SHIGELLA FLEXNERI 2A O-AG REMARK 900 PENTADECASACCHARIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE FOR CHAINS A,C RESIDUES 1-107 IS REMARK 999 CAH04481.2, AND FOR CHAINS B,D RESIDUES 1-113 IS REMARK 999 CAH04480.1. REMARK 999 RESIDUE NUMBERING OF ANTIBODY VARIABLE REGIONS FOLLOWS THE REMARK 999 KABAT CONVENTION (E.A. KABAT, T.T. WU, H.M. PERRY, K.S. REMARK 999 GOTTESMAN, C. FOELLER. SEQUENCES OF PROTEINS OF REMARK 999 IMMUNOLOGICAL INTEREST, 5TH ED. (1991). NIH PUBLICATION NO. REMARK 999 91-3242, NATIONAL INSTITUTES OF HEALTH, BETHESDA, MD). REMARK 999 DISCREPANCIES BETWEEN THE DATABASE SEQUENCE CAH04481.2 AND REMARK 999 THIS PDB ENTRY OCCUR AT POSITIONS ASP 1, ILE 2, ALA 7, ALA REMARK 999 8, AND PHE 9 (CHAINS A,C), AND BETWEEN DATABASE SEQUENCE REMARK 999 CAH04480.1 AND THIS ENTRY AT POSITION VAL 4 (CHAINS B,D). REMARK 999 THESE N-TERMINAL SEQUENCE DISCREPANCIES ARE DUE TO THE REMARK 999 PRIMERS USED FOR NUCLEOTIDE SEQUENCE DETERMINATION. DBREF 3C5S A 1 214 PDB 3C5S 3C5S 1 219 DBREF 3C5S B 1 217 PDB 3C5S 3C5S 1 217 DBREF 3C5S C 1 214 PDB 3C5S 3C5S 1 219 DBREF 3C5S D 1 217 PDB 3C5S 3C5S 1 217 SEQRES 1 A 219 ASP ILE VAL MET THR GLN ALA ALA PHE SER ASN PRO VAL SEQRES 2 A 219 THR LEU GLY THR SER ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 LYS SER LEU LEU HIS SER ASP GLY ILE THR TYR LEU TYR SEQRES 4 A 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO HIS LEU LEU SEQRES 5 A 219 ILE TYR HIS LEU SER ASN LEU ALA SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER SER SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 ARG ILE SER ARG VAL GLU ALA GLU ASP VAL GLY ILE TYR SEQRES 8 A 219 TYR CYS ALA HIS ASN VAL GLU LEU PRO ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 217 GLU VAL LYS VAL GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 217 PRO GLY GLY SER MET LYS ILE SER CYS VAL VAL SER GLY SEQRES 3 B 217 LEU THR PHE SER ASN TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 B 217 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 B 217 LEU LYS SER ASP ASN TYR ALA THR TYR TYR ALA GLU SER SEQRES 6 B 217 VAL LYS GLY LYS PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 B 217 SER ARG LEU TYR LEU GLN MET ASN ASN LEU ARG THR GLU SEQRES 8 B 217 ASP THR GLY ILE TYR TYR CYS PHE LEU PRO MET ASP TYR SEQRES 9 B 217 TRP GLY GLN GLY THR SER VAL THR VAL SER SER ALA LYS SEQRES 10 B 217 THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER SEQRES 11 B 217 ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU SEQRES 12 B 217 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 B 217 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 B 217 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 B 217 VAL THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL SEQRES 16 B 217 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 B 217 ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 C 219 ASP ILE VAL MET THR GLN ALA ALA PHE SER ASN PRO VAL SEQRES 2 C 219 THR LEU GLY THR SER ALA SER ILE SER CYS ARG SER SER SEQRES 3 C 219 LYS SER LEU LEU HIS SER ASP GLY ILE THR TYR LEU TYR SEQRES 4 C 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO HIS LEU LEU SEQRES 5 C 219 ILE TYR HIS LEU SER ASN LEU ALA SER GLY VAL PRO ASP SEQRES 6 C 219 ARG PHE SER SER SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 C 219 ARG ILE SER ARG VAL GLU ALA GLU ASP VAL GLY ILE TYR SEQRES 8 C 219 TYR CYS ALA HIS ASN VAL GLU LEU PRO ARG THR PHE GLY SEQRES 9 C 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 C 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 C 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 C 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 C 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 C 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 C 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 C 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 C 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 D 217 GLU VAL LYS VAL GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 217 PRO GLY GLY SER MET LYS ILE SER CYS VAL VAL SER GLY SEQRES 3 D 217 LEU THR PHE SER ASN TYR TRP MET SER TRP VAL ARG GLN SEQRES 4 D 217 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLU ILE ARG SEQRES 5 D 217 LEU LYS SER ASP ASN TYR ALA THR TYR TYR ALA GLU SER SEQRES 6 D 217 VAL LYS GLY LYS PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 D 217 SER ARG LEU TYR LEU GLN MET ASN ASN LEU ARG THR GLU SEQRES 8 D 217 ASP THR GLY ILE TYR TYR CYS PHE LEU PRO MET ASP TYR SEQRES 9 D 217 TRP GLY GLN GLY THR SER VAL THR VAL SER SER ALA LYS SEQRES 10 D 217 THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER SEQRES 11 D 217 ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU SEQRES 12 D 217 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 D 217 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 D 217 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 D 217 VAL THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL SEQRES 16 D 217 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 D 217 ASP LYS LYS ILE VAL PRO ARG ASP CYS FORMUL 5 HOH *401(H2 O) HELIX 1 1 GLU A 79 VAL A 83 5 5 HELIX 2 2 SER A 121 GLY A 128 1 8 HELIX 3 3 LYS A 183 GLU A 187 1 5 HELIX 4 4 GLU B 61 LYS B 64 5 4 HELIX 5 5 ARG B 83 THR B 87 5 5 HELIX 6 6 SER B 158 SER B 160 5 3 HELIX 7 7 SER B 188 TRP B 190 5 3 HELIX 8 8 PRO B 202 SER B 205 5 4 HELIX 9 9 GLU C 79 VAL C 83 5 5 HELIX 10 10 SER C 121 GLY C 128 1 8 HELIX 11 11 LYS C 183 ARG C 188 1 6 HELIX 12 12 THR D 28 TYR D 32 5 5 HELIX 13 13 LEU D 52A ASN D 54 5 5 HELIX 14 14 ASP D 73 LYS D 75 5 3 HELIX 15 15 ARG D 83 THR D 87 5 5 HELIX 16 16 SER D 158 SER D 160 5 3 HELIX 17 17 PRO D 202 SER D 205 5 4 SHEET 1 A 4 MET A 4 THR A 5 0 SHEET 2 A 4 ALA A 19 SER A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 GLY A 66 -1 N SER A 63 O ARG A 74 SHEET 1 B 2 VAL A 13 THR A 14 0 SHEET 2 B 2 ILE A 106 LYS A 107 1 O LYS A 107 N VAL A 13 SHEET 1 C 5 ASN A 53 LEU A 54 0 SHEET 2 C 5 PRO A 44 TYR A 49 -1 N TYR A 49 O ASN A 53 SHEET 3 C 5 LEU A 33 GLN A 38 -1 N TRP A 35 O LEU A 47 SHEET 4 C 5 GLY A 84 HIS A 90 -1 O ILE A 85 N GLN A 38 SHEET 5 C 5 THR A 102 LEU A 104 -1 O THR A 102 N TYR A 86 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O ASN A 137 N THR A 114 SHEET 3 D 4 TYR A 173 THR A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N LEU A 160 O THR A 178 SHEET 1 E 4 SER A 153 GLU A 154 0 SHEET 2 E 4 ASN A 145 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 E 4 SER A 191 HIS A 198 -1 O GLU A 195 N LYS A 147 SHEET 4 E 4 SER A 201 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 F 4 LYS B 3 SER B 7 0 SHEET 2 F 4 MET B 18 SER B 25 -1 O VAL B 23 N GLU B 5 SHEET 3 F 4 ARG B 77 MET B 82 -1 O MET B 82 N MET B 18 SHEET 4 F 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 G 6 GLY B 10 VAL B 12 0 SHEET 2 G 6 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 G 6 GLY B 88 LEU B 94 -1 N TYR B 90 O THR B 107 SHEET 4 G 6 MET B 34 SER B 40 -1 N VAL B 37 O TYR B 91 SHEET 5 G 6 GLY B 44 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 G 6 TYR B 58 TYR B 59 -1 O TYR B 58 N GLU B 50 SHEET 1 H 4 GLY B 10 VAL B 12 0 SHEET 2 H 4 THR B 107 VAL B 111 1 O THR B 110 N GLY B 10 SHEET 3 H 4 GLY B 88 LEU B 94 -1 N TYR B 90 O THR B 107 SHEET 4 H 4 TYR B 102 TRP B 103 -1 O TYR B 102 N LEU B 94 SHEET 1 I 4 SER B 120 LEU B 124 0 SHEET 2 I 4 MET B 137 TYR B 147 -1 O GLY B 141 N LEU B 124 SHEET 3 I 4 LEU B 176 PRO B 186 -1 O VAL B 185 N VAL B 138 SHEET 4 I 4 VAL B 165 THR B 167 -1 N HIS B 166 O SER B 182 SHEET 1 J 4 SER B 120 LEU B 124 0 SHEET 2 J 4 MET B 137 TYR B 147 -1 O GLY B 141 N LEU B 124 SHEET 3 J 4 LEU B 176 PRO B 186 -1 O VAL B 185 N VAL B 138 SHEET 4 J 4 VAL B 171 GLN B 173 -1 N GLN B 173 O LEU B 176 SHEET 1 K 3 THR B 153 TRP B 156 0 SHEET 2 K 3 THR B 196 HIS B 201 -1 O ASN B 198 N THR B 155 SHEET 3 K 3 THR B 206 LYS B 211 -1 O VAL B 208 N VAL B 199 SHEET 1 L 4 MET C 4 THR C 5 0 SHEET 2 L 4 ALA C 19 SER C 25 -1 O ARG C 24 N THR C 5 SHEET 3 L 4 ASP C 70 ILE C 75 -1 O LEU C 73 N ILE C 21 SHEET 4 L 4 PHE C 62 GLY C 66 -1 N SER C 63 O ARG C 74 SHEET 1 M 2 VAL C 13 THR C 14 0 SHEET 2 M 2 ILE C 106 LYS C 107 1 O LYS C 107 N VAL C 13 SHEET 1 N 5 ASN C 53 LEU C 54 0 SHEET 2 N 5 HIS C 45 TYR C 49 -1 N TYR C 49 O ASN C 53 SHEET 3 N 5 LEU C 33 GLN C 38 -1 N TRP C 35 O LEU C 47 SHEET 4 N 5 ILE C 85 HIS C 90 -1 O ILE C 85 N GLN C 38 SHEET 5 N 5 THR C 102 LYS C 103 -1 O THR C 102 N TYR C 86 SHEET 1 O 4 THR C 114 PHE C 118 0 SHEET 2 O 4 GLY C 129 PHE C 139 -1 O VAL C 133 N PHE C 118 SHEET 3 O 4 TYR C 173 THR C 182 -1 O MET C 175 N LEU C 136 SHEET 4 O 4 VAL C 159 TRP C 163 -1 N SER C 162 O SER C 176 SHEET 1 P 4 SER C 153 ARG C 155 0 SHEET 2 P 4 ASN C 145 ILE C 150 -1 N TRP C 148 O ARG C 155 SHEET 3 P 4 SER C 191 THR C 197 -1 O THR C 197 N ASN C 145 SHEET 4 P 4 ILE C 205 ASN C 210 -1 O ILE C 205 N ALA C 196 SHEET 1 Q 4 LYS D 3 SER D 7 0 SHEET 2 Q 4 MET D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 Q 4 ARG D 77 MET D 82 -1 O MET D 82 N MET D 18 SHEET 4 Q 4 PHE D 67 ASP D 72 -1 N SER D 70 O TYR D 79 SHEET 1 R 6 LEU D 11 VAL D 12 0 SHEET 2 R 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 R 6 GLY D 88 LEU D 94 -1 N TYR D 90 O THR D 107 SHEET 4 R 6 MET D 34 SER D 40 -1 N VAL D 37 O TYR D 91 SHEET 5 R 6 GLY D 44 ILE D 51 -1 O VAL D 48 N TRP D 36 SHEET 6 R 6 THR D 57 TYR D 59 -1 O TYR D 58 N GLU D 50 SHEET 1 S 4 LEU D 11 VAL D 12 0 SHEET 2 S 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 S 4 GLY D 88 LEU D 94 -1 N TYR D 90 O THR D 107 SHEET 4 S 4 TYR D 102 TRP D 103 -1 O TYR D 102 N LEU D 94 SHEET 1 T 4 SER D 120 LEU D 124 0 SHEET 2 T 4 MET D 137 TYR D 147 -1 O GLY D 141 N LEU D 124 SHEET 3 T 4 LEU D 176 PRO D 186 -1 O TYR D 177 N TYR D 147 SHEET 4 T 4 VAL D 165 THR D 167 -1 N HIS D 166 O SER D 182 SHEET 1 U 4 SER D 120 LEU D 124 0 SHEET 2 U 4 MET D 137 TYR D 147 -1 O GLY D 141 N LEU D 124 SHEET 3 U 4 LEU D 176 PRO D 186 -1 O TYR D 177 N TYR D 147 SHEET 4 U 4 VAL D 171 GLN D 173 -1 N GLN D 173 O LEU D 176 SHEET 1 V 3 THR D 153 TRP D 156 0 SHEET 2 V 3 THR D 196 HIS D 201 -1 O ASN D 198 N THR D 155 SHEET 3 V 3 THR D 206 LYS D 211 -1 O VAL D 208 N VAL D 199 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.11 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.05 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.05 SSBOND 4 CYS B 142 CYS B 197 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.09 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.05 SSBOND 7 CYS D 22 CYS D 92 1555 1555 2.07 SSBOND 8 CYS D 142 CYS D 197 1555 1555 2.04 CISPEP 1 LEU A 94 PRO A 95 0 -2.97 CISPEP 2 TYR A 140 PRO A 141 0 -3.87 CISPEP 3 PRO B 95 MET B 96 0 1.50 CISPEP 4 PHE B 148 PRO B 149 0 -5.60 CISPEP 5 GLU B 150 PRO B 151 0 -0.95 CISPEP 6 TRP B 190 PRO B 191 0 -0.95 CISPEP 7 LEU C 94 PRO C 95 0 -2.11 CISPEP 8 TYR C 140 PRO C 141 0 6.10 CISPEP 9 PRO D 95 MET D 96 0 5.01 CISPEP 10 PHE D 148 PRO D 149 0 -14.80 CISPEP 11 GLU D 150 PRO D 151 0 -3.56 CISPEP 12 TRP D 190 PRO D 191 0 -0.51 CRYST1 47.260 59.830 74.380 77.53 83.97 80.89 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021160 -0.003395 -0.001581 0.00000 SCALE2 0.000000 0.016928 -0.003509 0.00000 SCALE3 0.000000 0.000000 0.013807 0.00000