HEADER OXIDOREDUCTASE 24-JAN-08 3C24 TITLE CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE (YP_511008.1) FROM TITLE 2 JANNASCHIA SP. CCS1 AT 1.62 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA SP.; SOURCE 3 ORGANISM_TAXID: 290400; SOURCE 4 STRAIN: CCS1; SOURCE 5 GENE: YP_511008.1, JANN_3066; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_511008.1, A PUTATIVE OXIDOREDUCTASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3C24 1 REMARK SEQADV REVDAT 5 24-JUL-19 3C24 1 REMARK LINK REVDAT 4 25-OCT-17 3C24 1 REMARK REVDAT 3 13-JUL-11 3C24 1 VERSN REVDAT 2 24-FEB-09 3C24 1 VERSN REVDAT 1 05-FEB-08 3C24 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE (YP_511008.1) JRNL TITL 2 FROM JANNASCHIA SP. CCS1 AT 1.62 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 64468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3051 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 565 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 1.21000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4454 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2931 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6100 ; 1.695 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7220 ; 1.523 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 4.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;32.151 ;24.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;12.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5003 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 835 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2831 ; 1.863 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1138 ; 0.575 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4584 ; 2.923 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1623 ; 4.887 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1494 ; 7.326 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 245 REMARK 3 RESIDUE RANGE : A 249 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8516 38.8792 11.4733 REMARK 3 T TENSOR REMARK 3 T11: -0.0290 T22: -0.0358 REMARK 3 T33: -0.0249 T12: -0.0047 REMARK 3 T13: -0.0021 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4680 L22: 0.1607 REMARK 3 L33: 0.9854 L12: -0.0980 REMARK 3 L13: -0.4178 L23: 0.1826 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.0371 S13: 0.0272 REMARK 3 S21: -0.0051 S22: 0.0130 S23: -0.0289 REMARK 3 S31: -0.0371 S32: 0.0446 S33: -0.0440 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 245 REMARK 3 RESIDUE RANGE : B 249 B 284 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9131 40.8916 37.3845 REMARK 3 T TENSOR REMARK 3 T11: -0.0372 T22: -0.0462 REMARK 3 T33: -0.0230 T12: 0.0069 REMARK 3 T13: -0.0057 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5971 L22: 0.1750 REMARK 3 L33: 0.8890 L12: -0.0221 REMARK 3 L13: -0.2893 L23: 0.0433 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.0215 S13: 0.0029 REMARK 3 S21: -0.0042 S22: -0.0112 S23: 0.0253 REMARK 3 S31: -0.0170 S32: -0.0966 S33: -0.0263 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. GOL AND SO4 MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION REMARK 3 ARE MODELED. REMARK 3 5. RAMACHANDRAN OUTLIER RESIDUE 124 IS WELL SUPPORTED BY THE REMARK 3 DENSITY. REMARK 4 REMARK 4 3C24 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000046245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97966 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 28.456 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.16M (NH4)2SO4, 20.0% REMARK 280 GLYCEROL, 20.0% PEG 4000, 0.1M ACETATE PH 4.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9150 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 246 REMARK 465 SER A 247 REMARK 465 ASP A 248 REMARK 465 LYS A 285 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 VAL B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 LYS B 5 REMARK 465 ASN B 6 REMARK 465 ASP B 7 REMARK 465 PRO B 246 REMARK 465 SER B 247 REMARK 465 ASP B 248 REMARK 465 LYS B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG A 25 NE CZ NH1 NH2 REMARK 470 ILE A 42 CD1 REMARK 470 GLN A 51 CD OE1 NE2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 LYS A 274 CE NZ REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 ARG B 25 CZ NH1 NH2 REMARK 470 ARG B 49 NH2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 LYS B 81 CD CE NZ REMARK 470 ARG B 89 CZ NH1 NH2 REMARK 470 LEU B 251 CG CD1 CD2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 509 O HOH A 532 2.01 REMARK 500 O HOH B 462 O HOH B 543 2.06 REMARK 500 O HOH B 331 O HOH B 508 2.06 REMARK 500 O HOH B 329 O HOH B 502 2.12 REMARK 500 O HOH A 477 O HOH A 579 2.15 REMARK 500 O PHE B 128 O HOH B 557 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 7 38.29 -86.19 REMARK 500 HIS A 124 154.98 81.10 REMARK 500 ILE A 144 -56.54 -123.99 REMARK 500 ARG A 252 61.35 -60.10 REMARK 500 LEU A 253 -13.75 178.93 REMARK 500 ASP A 265 30.77 -92.63 REMARK 500 ASP A 265 32.63 -93.68 REMARK 500 HIS B 124 156.09 76.55 REMARK 500 ILE B 144 -59.26 -130.76 REMARK 500 ASP B 265 37.92 -98.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 289 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379416 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3C24 A 1 285 UNP Q28MS9 Q28MS9_JANSC 1 285 DBREF 3C24 B 1 285 UNP Q28MS9 Q28MS9_JANSC 1 285 SEQADV 3C24 GLY A 0 UNP Q28MS9 EXPRESSION TAG SEQADV 3C24 GLY B 0 UNP Q28MS9 EXPRESSION TAG SEQRES 1 A 286 GLY MSE VAL LYS ASP LYS ASN ASP VAL GLY PRO LYS THR SEQRES 2 A 286 VAL ALA ILE LEU GLY ALA GLY GLY LYS MSE GLY ALA ARG SEQRES 3 A 286 ILE THR ARG LYS ILE HIS ASP SER ALA HIS HIS LEU ALA SEQRES 4 A 286 ALA ILE GLU ILE ALA PRO GLU GLY ARG ASP ARG LEU GLN SEQRES 5 A 286 GLY MSE GLY ILE PRO LEU THR ASP GLY ASP GLY TRP ILE SEQRES 6 A 286 ASP GLU ALA ASP VAL VAL VAL LEU ALA LEU PRO ASP ASN SEQRES 7 A 286 ILE ILE GLU LYS VAL ALA GLU ASP ILE VAL PRO ARG VAL SEQRES 8 A 286 ARG PRO GLY THR ILE VAL LEU ILE LEU ASP ALA ALA ALA SEQRES 9 A 286 PRO TYR ALA GLY VAL MSE PRO GLU ARG ALA ASP ILE THR SEQRES 10 A 286 TYR PHE ILE GLY HIS PRO CYS HIS PRO PRO LEU PHE ASN SEQRES 11 A 286 ASP GLU THR ASP PRO ALA ALA ARG THR ASP TYR HIS GLY SEQRES 12 A 286 GLY ILE ALA LYS GLN ALA ILE VAL CYS ALA LEU MSE GLN SEQRES 13 A 286 GLY PRO GLU GLU HIS TYR ALA ILE GLY ALA ASP ILE CYS SEQRES 14 A 286 GLU THR MSE TRP SER PRO VAL THR ARG THR HIS ARG VAL SEQRES 15 A 286 THR THR GLU GLN LEU ALA ILE LEU GLU PRO GLY LEU SER SEQRES 16 A 286 GLU MSE VAL ALA MSE PRO PHE VAL GLU THR MSE VAL HIS SEQRES 17 A 286 ALA VAL ASP GLU CYS ALA ASP ARG TYR GLY ILE ASP ARG SEQRES 18 A 286 GLN ALA ALA LEU ASP PHE MSE ILE GLY HIS LEU ASN VAL SEQRES 19 A 286 GLU ILE ALA MSE TRP PHE GLY TYR SER PRO LYS VAL PRO SEQRES 20 A 286 SER ASP ALA ALA LEU ARG LEU MSE GLU PHE ALA LYS ASP SEQRES 21 A 286 ILE VAL VAL LYS GLU ASP TRP ARG GLU ALA LEU ASN PRO SEQRES 22 A 286 ALA LYS VAL LYS GLN ALA ALA GLU LEU ILE ALA GLY LYS SEQRES 1 B 286 GLY MSE VAL LYS ASP LYS ASN ASP VAL GLY PRO LYS THR SEQRES 2 B 286 VAL ALA ILE LEU GLY ALA GLY GLY LYS MSE GLY ALA ARG SEQRES 3 B 286 ILE THR ARG LYS ILE HIS ASP SER ALA HIS HIS LEU ALA SEQRES 4 B 286 ALA ILE GLU ILE ALA PRO GLU GLY ARG ASP ARG LEU GLN SEQRES 5 B 286 GLY MSE GLY ILE PRO LEU THR ASP GLY ASP GLY TRP ILE SEQRES 6 B 286 ASP GLU ALA ASP VAL VAL VAL LEU ALA LEU PRO ASP ASN SEQRES 7 B 286 ILE ILE GLU LYS VAL ALA GLU ASP ILE VAL PRO ARG VAL SEQRES 8 B 286 ARG PRO GLY THR ILE VAL LEU ILE LEU ASP ALA ALA ALA SEQRES 9 B 286 PRO TYR ALA GLY VAL MSE PRO GLU ARG ALA ASP ILE THR SEQRES 10 B 286 TYR PHE ILE GLY HIS PRO CYS HIS PRO PRO LEU PHE ASN SEQRES 11 B 286 ASP GLU THR ASP PRO ALA ALA ARG THR ASP TYR HIS GLY SEQRES 12 B 286 GLY ILE ALA LYS GLN ALA ILE VAL CYS ALA LEU MSE GLN SEQRES 13 B 286 GLY PRO GLU GLU HIS TYR ALA ILE GLY ALA ASP ILE CYS SEQRES 14 B 286 GLU THR MSE TRP SER PRO VAL THR ARG THR HIS ARG VAL SEQRES 15 B 286 THR THR GLU GLN LEU ALA ILE LEU GLU PRO GLY LEU SER SEQRES 16 B 286 GLU MSE VAL ALA MSE PRO PHE VAL GLU THR MSE VAL HIS SEQRES 17 B 286 ALA VAL ASP GLU CYS ALA ASP ARG TYR GLY ILE ASP ARG SEQRES 18 B 286 GLN ALA ALA LEU ASP PHE MSE ILE GLY HIS LEU ASN VAL SEQRES 19 B 286 GLU ILE ALA MSE TRP PHE GLY TYR SER PRO LYS VAL PRO SEQRES 20 B 286 SER ASP ALA ALA LEU ARG LEU MSE GLU PHE ALA LYS ASP SEQRES 21 B 286 ILE VAL VAL LYS GLU ASP TRP ARG GLU ALA LEU ASN PRO SEQRES 22 B 286 ALA LYS VAL LYS GLN ALA ALA GLU LEU ILE ALA GLY LYS MODRES 3C24 MSE A 22 MET SELENOMETHIONINE MODRES 3C24 MSE A 53 MET SELENOMETHIONINE MODRES 3C24 MSE A 109 MET SELENOMETHIONINE MODRES 3C24 MSE A 154 MET SELENOMETHIONINE MODRES 3C24 MSE A 171 MET SELENOMETHIONINE MODRES 3C24 MSE A 196 MET SELENOMETHIONINE MODRES 3C24 MSE A 199 MET SELENOMETHIONINE MODRES 3C24 MSE A 205 MET SELENOMETHIONINE MODRES 3C24 MSE A 227 MET SELENOMETHIONINE MODRES 3C24 MSE A 237 MET SELENOMETHIONINE MODRES 3C24 MSE A 254 MET SELENOMETHIONINE MODRES 3C24 MSE B 22 MET SELENOMETHIONINE MODRES 3C24 MSE B 53 MET SELENOMETHIONINE MODRES 3C24 MSE B 109 MET SELENOMETHIONINE MODRES 3C24 MSE B 154 MET SELENOMETHIONINE MODRES 3C24 MSE B 171 MET SELENOMETHIONINE MODRES 3C24 MSE B 196 MET SELENOMETHIONINE MODRES 3C24 MSE B 199 MET SELENOMETHIONINE MODRES 3C24 MSE B 205 MET SELENOMETHIONINE MODRES 3C24 MSE B 227 MET SELENOMETHIONINE MODRES 3C24 MSE B 237 MET SELENOMETHIONINE MODRES 3C24 MSE B 254 MET SELENOMETHIONINE HET MSE A 22 13 HET MSE A 53 8 HET MSE A 109 8 HET MSE A 154 8 HET MSE A 171 8 HET MSE A 196 13 HET MSE A 199 13 HET MSE A 205 8 HET MSE A 227 8 HET MSE A 237 8 HET MSE A 254 8 HET MSE B 22 8 HET MSE B 53 8 HET MSE B 109 8 HET MSE B 154 8 HET MSE B 171 8 HET MSE B 196 13 HET MSE B 199 8 HET MSE B 205 8 HET MSE B 227 8 HET MSE B 237 8 HET MSE B 254 8 HET SO4 A 286 5 HET SO4 A 287 5 HET GOL A 288 6 HET SO4 B 286 5 HET SO4 B 287 5 HET GOL B 288 6 HET GOL B 289 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 10 HOH *565(H2 O) HELIX 1 1 GLY A 20 SER A 33 1 14 HELIX 2 2 ALA A 43 MSE A 53 1 11 HELIX 3 3 ASP A 61 GLU A 66 5 6 HELIX 4 4 PRO A 75 VAL A 87 1 13 HELIX 5 5 PRO A 88 VAL A 90 5 3 HELIX 6 6 ALA A 101 GLY A 107 1 7 HELIX 7 7 ASP A 133 THR A 138 1 6 HELIX 8 8 GLU A 159 TRP A 172 1 14 HELIX 9 9 THR A 182 GLU A 190 1 9 HELIX 10 10 PRO A 191 MSE A 196 1 6 HELIX 11 11 VAL A 197 GLY A 217 1 21 HELIX 12 12 ASP A 219 PHE A 239 1 21 HELIX 13 13 LEU A 253 VAL A 262 1 10 HELIX 14 14 ASP A 265 LEU A 270 5 6 HELIX 15 15 ASN A 271 GLY A 284 1 14 HELIX 16 16 GLY B 23 SER B 33 1 11 HELIX 17 17 ALA B 43 GLY B 52 1 10 HELIX 18 18 ASP B 61 GLU B 66 5 6 HELIX 19 19 PRO B 75 VAL B 87 1 13 HELIX 20 20 PRO B 88 VAL B 90 5 3 HELIX 21 21 ALA B 101 GLY B 107 1 7 HELIX 22 22 ASP B 133 THR B 138 1 6 HELIX 23 23 GLU B 159 TRP B 172 1 14 HELIX 24 24 THR B 182 GLU B 190 1 9 HELIX 25 25 PRO B 191 VAL B 197 1 7 HELIX 26 26 VAL B 197 ARG B 215 1 19 HELIX 27 27 ASP B 219 PHE B 239 1 21 HELIX 28 28 ALA B 249 VAL B 262 1 14 HELIX 29 29 ASP B 265 LEU B 270 5 6 HELIX 30 30 ASN B 271 ALA B 283 1 13 SHEET 1 A 7 HIS A 36 ILE A 40 0 SHEET 2 A 7 THR A 12 LEU A 16 1 N VAL A 13 O HIS A 36 SHEET 3 A 7 VAL A 69 LEU A 72 1 O VAL A 71 N ALA A 14 SHEET 4 A 7 ILE A 95 ILE A 98 1 O LEU A 97 N VAL A 70 SHEET 5 A 7 THR A 116 PRO A 122 1 O THR A 116 N VAL A 96 SHEET 6 A 7 GLN A 147 GLN A 155 -1 O ALA A 152 N ILE A 119 SHEET 7 A 7 VAL A 175 ARG A 180 1 O HIS A 179 N ILE A 149 SHEET 1 B 7 HIS B 36 ILE B 40 0 SHEET 2 B 7 THR B 12 LEU B 16 1 N VAL B 13 O HIS B 36 SHEET 3 B 7 VAL B 69 LEU B 72 1 O VAL B 71 N ALA B 14 SHEET 4 B 7 ILE B 95 ILE B 98 1 O ILE B 95 N VAL B 70 SHEET 5 B 7 THR B 116 PRO B 122 1 O THR B 116 N VAL B 96 SHEET 6 B 7 GLN B 147 GLN B 155 -1 O ALA B 152 N ILE B 119 SHEET 7 B 7 VAL B 175 ARG B 180 1 O HIS B 179 N CYS B 151 LINK C LYS A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N GLY A 23 1555 1555 1.31 LINK C GLY A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N GLY A 54 1555 1555 1.32 LINK C VAL A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N PRO A 110 1555 1555 1.35 LINK C LEU A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N GLN A 155 1555 1555 1.32 LINK C THR A 170 N MSE A 171 1555 1555 1.34 LINK C MSE A 171 N TRP A 172 1555 1555 1.33 LINK C GLU A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N VAL A 197 1555 1555 1.32 LINK C ALA A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N PRO A 200 1555 1555 1.35 LINK C THR A 204 N MSE A 205 1555 1555 1.34 LINK C MSE A 205 N VAL A 206 1555 1555 1.34 LINK C PHE A 226 N MSE A 227 1555 1555 1.34 LINK C MSE A 227 N ILE A 228 1555 1555 1.31 LINK C ALA A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N TRP A 238 1555 1555 1.33 LINK C LEU A 253 N MSE A 254 1555 1555 1.32 LINK C MSE A 254 N GLU A 255 1555 1555 1.32 LINK C LYS B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N GLY B 23 1555 1555 1.33 LINK C GLY B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N GLY B 54 1555 1555 1.31 LINK C VAL B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N PRO B 110 1555 1555 1.33 LINK C LEU B 153 N MSE B 154 1555 1555 1.34 LINK C MSE B 154 N GLN B 155 1555 1555 1.34 LINK C THR B 170 N MSE B 171 1555 1555 1.33 LINK C MSE B 171 N TRP B 172 1555 1555 1.33 LINK C GLU B 195 N MSE B 196 1555 1555 1.33 LINK C MSE B 196 N VAL B 197 1555 1555 1.31 LINK C ALA B 198 N MSE B 199 1555 1555 1.31 LINK C MSE B 199 N PRO B 200 1555 1555 1.33 LINK C THR B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N VAL B 206 1555 1555 1.34 LINK C PHE B 226 N MSE B 227 1555 1555 1.33 LINK C MSE B 227 N ILE B 228 1555 1555 1.31 LINK C ALA B 236 N MSE B 237 1555 1555 1.32 LINK C MSE B 237 N TRP B 238 1555 1555 1.32 LINK C LEU B 253 N MSE B 254 1555 1555 1.31 LINK C MSE B 254 N GLU B 255 1555 1555 1.32 CISPEP 1 SER A 173 PRO A 174 0 1.68 CISPEP 2 GLU A 190 PRO A 191 0 12.95 CISPEP 3 SER B 173 PRO B 174 0 1.14 CISPEP 4 GLU B 190 PRO B 191 0 12.57 SITE 1 AC1 6 LYS A 258 TRP A 266 ARG A 267 HOH A 459 SITE 2 AC1 6 HOH A 469 HIS B 207 SITE 1 AC2 2 HIS A 124 HIS A 141 SITE 1 AC3 8 HIS A 207 LYS B 258 TRP B 266 ARG B 267 SITE 2 AC3 8 HOH B 378 HOH B 390 HOH B 497 HOH B 530 SITE 1 AC4 7 HIS B 31 HIS B 35 HIS B 36 LEU B 37 SITE 2 AC4 7 HOH B 483 HOH B 555 HOH B 556 SITE 1 AC5 5 ALA A 67 ASP A 68 ARG A 91 PRO A 92 SITE 2 AC5 5 THR A 94 SITE 1 AC6 8 ARG A 91 LEU B 153 ARG B 180 THR B 182 SITE 2 AC6 8 HOH B 291 HOH B 293 HOH B 372 HOH B 381 SITE 1 AC7 4 ALA B 67 ASP B 68 PRO B 92 THR B 94 CRYST1 47.080 80.620 142.840 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007001 0.00000