HEADER DNA BINDING PROTEIN 08-JUN-11 3B0D TITLE CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W COMPLEX, TITLE 2 CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROMERE PROTEIN T; COMPND 3 CHAIN: T, B; COMPND 4 FRAGMENT: UNP RESIDUES 54-162; COMPND 5 SYNONYM: CENP-T; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CENTROMERE PROTEIN W; COMPND 9 CHAIN: W, C; COMPND 10 SYNONYM: CENP-W; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_TAXID: 9031; SOURCE 4 GENE: CENPT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSFDUET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 12 ORGANISM_TAXID: 9031; SOURCE 13 GENE: CENPW; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRSFDUET KEYWDS HISTONE FOLD, DNA BINDING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NISHINO,K.TAKEUCHI,K.E.GASCOIGNE,A.SUZUKI,T.HORI,T.OYAMA, AUTHOR 2 K.MORIKAWA,I.M.CHEESEMAN,T.FUKAGAWA REVDAT 2 11-OCT-17 3B0D 1 REMARK REVDAT 1 07-MAR-12 3B0D 0 JRNL AUTH T.NISHINO,K.TAKEUCHI,K.E.GASCOIGNE,A.SUZUKI,T.HORI,T.OYAMA, JRNL AUTH 2 K.MORIKAWA,I.M.CHEESEMAN,T.FUKAGAWA JRNL TITL CENP-T-W-S-X FORMS A UNIQUE CENTROMERIC CHROMATIN STRUCTURE JRNL TITL 2 WITH A HISTONE-LIKE FOLD. JRNL REF CELL(CAMBRIDGE,MASS.) V. 148 487 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22304917 JRNL DOI 10.1016/J.CELL.2011.11.061 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7395 - 5.2909 0.95 1528 151 0.2012 0.2282 REMARK 3 2 5.2909 - 4.2009 0.99 1455 144 0.1511 0.2168 REMARK 3 3 4.2009 - 3.6703 1.00 1438 147 0.1750 0.2157 REMARK 3 4 3.6703 - 3.3349 1.00 1473 154 0.2005 0.2534 REMARK 3 5 3.3349 - 3.0959 1.00 1412 144 0.2284 0.3057 REMARK 3 6 3.0959 - 2.9134 1.00 1437 137 0.2368 0.2876 REMARK 3 7 2.9134 - 2.7676 1.00 1417 145 0.2334 0.2997 REMARK 3 8 2.7676 - 2.6471 1.00 1401 145 0.2153 0.3347 REMARK 3 9 2.6471 - 2.5452 1.00 1431 142 0.2298 0.2785 REMARK 3 10 2.5452 - 2.4574 1.00 1431 142 0.2382 0.3328 REMARK 3 11 2.4574 - 2.3806 1.00 1356 135 0.2479 0.3305 REMARK 3 12 2.3806 - 2.3125 1.00 1426 145 0.2439 0.3369 REMARK 3 13 2.3125 - 2.2517 1.00 1417 143 0.2281 0.3208 REMARK 3 14 2.2517 - 2.1967 1.00 1364 137 0.2588 0.3032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 53.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.630 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12880 REMARK 3 B22 (A**2) : -0.12880 REMARK 3 B33 (A**2) : 0.25770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2874 REMARK 3 ANGLE : 1.078 3860 REMARK 3 CHIRALITY : 0.075 445 REMARK 3 PLANARITY : 0.005 482 REMARK 3 DIHEDRAL : 13.834 1120 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 535:549) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6046 -3.0621 48.5189 REMARK 3 T TENSOR REMARK 3 T11: 0.6809 T22: 0.4670 REMARK 3 T33: 0.3819 T12: 0.1496 REMARK 3 T13: 0.0445 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0066 L22: 0.0009 REMARK 3 L33: 0.0079 L12: 0.0000 REMARK 3 L13: 0.0054 L23: 0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: -0.0138 S13: -0.0582 REMARK 3 S21: 0.0189 S22: 0.0990 S23: 0.0569 REMARK 3 S31: 0.0936 S32: 0.0004 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 550:589) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8125 7.1392 39.5444 REMARK 3 T TENSOR REMARK 3 T11: 0.5156 T22: -0.0538 REMARK 3 T33: 0.3198 T12: 0.5884 REMARK 3 T13: -0.1963 T23: -0.3059 REMARK 3 L TENSOR REMARK 3 L11: 0.0604 L22: 0.0979 REMARK 3 L33: 0.0172 L12: -0.0890 REMARK 3 L13: -0.0292 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.2065 S12: -0.2296 S13: 0.1922 REMARK 3 S21: 0.0424 S22: -0.0210 S23: 0.2966 REMARK 3 S31: 0.0857 S32: -0.0141 S33: -0.0886 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 590:599) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0069 3.6607 26.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.4324 T22: 0.3404 REMARK 3 T33: 0.4124 T12: 0.1074 REMARK 3 T13: -0.0259 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: 0.0036 REMARK 3 L33: 0.0087 L12: -0.0074 REMARK 3 L13: -0.0037 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: 0.0569 S13: 0.0275 REMARK 3 S21: -0.0384 S22: -0.0051 S23: 0.1012 REMARK 3 S31: -0.0434 S32: -0.0362 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 600:616) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5886 -4.5632 29.6743 REMARK 3 T TENSOR REMARK 3 T11: 0.3874 T22: 0.2147 REMARK 3 T33: 0.3575 T12: 0.0184 REMARK 3 T13: -0.0073 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: -0.0012 L22: 0.0054 REMARK 3 L33: 0.0076 L12: -0.0006 REMARK 3 L13: 0.0054 L23: 0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: 0.1889 S13: -0.1198 REMARK 3 S21: 0.0161 S22: -0.0372 S23: -0.0333 REMARK 3 S31: 0.0385 S32: 0.1066 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN T AND (RESSEQ 617:631) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9971 -13.0216 28.5211 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.4023 REMARK 3 T33: 0.5337 T12: -0.0567 REMARK 3 T13: 0.0161 T23: -0.1217 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: 0.0020 REMARK 3 L33: 0.0046 L12: -0.0039 REMARK 3 L13: 0.0032 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: 0.0576 S13: -0.0574 REMARK 3 S21: 0.0194 S22: -0.0317 S23: 0.0297 REMARK 3 S31: 0.0489 S32: 0.0449 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN W AND (RESSEQ 2:6) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8408 -9.7152 42.4157 REMARK 3 T TENSOR REMARK 3 T11: 1.0719 T22: 1.0266 REMARK 3 T33: 1.0078 T12: 0.0404 REMARK 3 T13: 0.0819 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.0001 L22: 0.0013 REMARK 3 L33: 0.0031 L12: 0.0001 REMARK 3 L13: -0.0003 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0045 S13: -0.0090 REMARK 3 S21: 0.0088 S22: -0.0139 S23: -0.0117 REMARK 3 S31: -0.0233 S32: -0.0095 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN W AND (RESSEQ 7:17) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1292 3.3808 38.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.4790 T22: 0.7127 REMARK 3 T33: 0.7053 T12: 0.1280 REMARK 3 T13: 0.0112 T23: -0.2205 REMARK 3 L TENSOR REMARK 3 L11: 0.0055 L22: 0.0002 REMARK 3 L33: -0.0007 L12: -0.0008 REMARK 3 L13: 0.0008 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.0084 S13: -0.0440 REMARK 3 S21: 0.0172 S22: 0.0354 S23: 0.0036 REMARK 3 S31: -0.0221 S32: -0.0085 S33: -0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN W AND (RESSEQ 18:26) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1229 5.4926 29.6386 REMARK 3 T TENSOR REMARK 3 T11: 0.4162 T22: 0.5990 REMARK 3 T33: 0.5842 T12: 0.1637 REMARK 3 T13: -0.1080 T23: -0.2486 REMARK 3 L TENSOR REMARK 3 L11: -0.0006 L22: 0.0093 REMARK 3 L33: 0.0006 L12: -0.0013 REMARK 3 L13: -0.0008 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0413 S13: -0.0101 REMARK 3 S21: -0.0107 S22: 0.0479 S23: 0.0112 REMARK 3 S31: -0.0072 S32: -0.0866 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN W AND (RESSEQ 27:59) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4130 0.9189 45.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.4653 T22: 0.2374 REMARK 3 T33: 0.3967 T12: 0.1872 REMARK 3 T13: -0.1238 T23: -0.1183 REMARK 3 L TENSOR REMARK 3 L11: 0.0726 L22: 0.0284 REMARK 3 L33: 0.0754 L12: 0.0295 REMARK 3 L13: 0.0147 L23: 0.0017 REMARK 3 S TENSOR REMARK 3 S11: -0.1726 S12: -0.1634 S13: 0.0839 REMARK 3 S21: 0.3832 S22: 0.2371 S23: -0.1105 REMARK 3 S31: 0.0038 S32: 0.0363 S33: 0.0809 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN W AND (RESSEQ 60:76) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4113 10.0494 45.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.6135 T22: 0.2528 REMARK 3 T33: 0.5633 T12: 0.1947 REMARK 3 T13: -0.2685 T23: -0.1187 REMARK 3 L TENSOR REMARK 3 L11: 0.0312 L22: 0.0492 REMARK 3 L33: 0.0011 L12: 0.0107 REMARK 3 L13: -0.0033 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0903 S12: -0.0180 S13: 0.0496 REMARK 3 S21: -0.0415 S22: 0.0439 S23: -0.0159 REMARK 3 S31: 0.0253 S32: 0.0073 S33: 0.0044 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 535:549) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7817 -11.6477 -2.7958 REMARK 3 T TENSOR REMARK 3 T11: 0.6746 T22: 0.3448 REMARK 3 T33: 0.3422 T12: -0.1029 REMARK 3 T13: -0.1081 T23: -0.1184 REMARK 3 L TENSOR REMARK 3 L11: 0.0900 L22: 0.0335 REMARK 3 L33: 0.0187 L12: 0.0460 REMARK 3 L13: -0.0439 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: -0.0475 S13: 0.0204 REMARK 3 S21: -0.0270 S22: -0.0216 S23: 0.0312 REMARK 3 S31: -0.0692 S32: -0.0171 S33: -0.0055 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 550:582) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3841 -23.0053 -0.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.6973 T22: 0.3901 REMARK 3 T33: 0.3062 T12: -0.5489 REMARK 3 T13: -0.0092 T23: -0.1007 REMARK 3 L TENSOR REMARK 3 L11: 0.0102 L22: 0.0296 REMARK 3 L33: 0.0967 L12: 0.0118 REMARK 3 L13: -0.0069 L23: 0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: 0.1057 S13: -0.0377 REMARK 3 S21: 0.0582 S22: -0.1703 S23: 0.1247 REMARK 3 S31: 0.0290 S32: -0.1348 S33: -0.2038 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 583:599) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1453 -25.7734 15.8647 REMARK 3 T TENSOR REMARK 3 T11: 0.5485 T22: 0.2979 REMARK 3 T33: 0.3274 T12: -0.3120 REMARK 3 T13: 0.0852 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 0.0093 L22: 0.0186 REMARK 3 L33: 0.0126 L12: -0.0098 REMARK 3 L13: -0.0019 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.0493 S13: 0.0330 REMARK 3 S21: 0.0457 S22: -0.0301 S23: -0.0467 REMARK 3 S31: 0.0875 S32: -0.0208 S33: -0.0183 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 600:608) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7609 -18.9389 8.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.5023 T22: 0.3468 REMARK 3 T33: 0.5212 T12: -0.1757 REMARK 3 T13: 0.0633 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0008 REMARK 3 L33: 0.0039 L12: 0.0022 REMARK 3 L13: -0.0039 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.0154 S13: -0.0029 REMARK 3 S21: -0.0276 S22: -0.0289 S23: -0.0466 REMARK 3 S31: 0.0283 S32: 0.0030 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 609:629) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4729 -8.1665 13.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.6136 T22: 0.2997 REMARK 3 T33: 0.5280 T12: -0.2503 REMARK 3 T13: 0.0660 T23: -0.2943 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.0084 REMARK 3 L33: 0.0099 L12: 0.0053 REMARK 3 L13: -0.0022 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.0256 S13: 0.0732 REMARK 3 S21: -0.0675 S22: 0.0032 S23: 0.0533 REMARK 3 S31: -0.1050 S32: -0.0267 S33: -0.0128 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 2:26) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8012 -19.9403 11.1467 REMARK 3 T TENSOR REMARK 3 T11: 0.6563 T22: 0.7578 REMARK 3 T33: 0.5114 T12: -0.3803 REMARK 3 T13: 0.0356 T23: -0.1387 REMARK 3 L TENSOR REMARK 3 L11: 0.0127 L22: 0.1123 REMARK 3 L33: 0.1148 L12: -0.0190 REMARK 3 L13: -0.0358 L23: 0.0766 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.1080 S13: -0.0199 REMARK 3 S21: 0.0067 S22: -0.0041 S23: 0.0945 REMARK 3 S31: 0.0005 S32: -0.1180 S33: 0.0031 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 27:76) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2765 -18.4960 -6.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.7516 T22: 0.0882 REMARK 3 T33: 0.2788 T12: -0.5576 REMARK 3 T13: -0.0235 T23: -0.1692 REMARK 3 L TENSOR REMARK 3 L11: 0.0060 L22: 0.0245 REMARK 3 L33: 0.0378 L12: -0.0094 REMARK 3 L13: -0.0150 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: 0.0505 S13: 0.0466 REMARK 3 S21: -0.3667 S22: -0.0660 S23: 0.0099 REMARK 3 S31: -0.0390 S32: -0.0470 S33: -0.2711 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3B0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000029919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.197 REMARK 200 RESOLUTION RANGE LOW (A) : 40.732 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER IN PHENIX PACKAGE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRATE-NAOH PH 5.0, 30% PEG REMARK 280 600, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.63733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 157.27467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 157.27467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.63733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY T 529 REMARK 465 SER T 530 REMARK 465 THR T 531 REMARK 465 ARG T 532 REMARK 465 GLU T 533 REMARK 465 PRO T 534 REMARK 465 GLY T 632 REMARK 465 ASN T 633 REMARK 465 LYS T 634 REMARK 465 VAL T 635 REMARK 465 ILE T 636 REMARK 465 PRO T 637 REMARK 465 CYS T 638 REMARK 465 LYS T 639 REMARK 465 GLY W 1 REMARK 465 GLY B 529 REMARK 465 SER B 530 REMARK 465 THR B 531 REMARK 465 ARG B 532 REMARK 465 GLU B 533 REMARK 465 PRO B 534 REMARK 465 VAL B 630 REMARK 465 SER B 631 REMARK 465 GLY B 632 REMARK 465 ASN B 633 REMARK 465 LYS B 634 REMARK 465 VAL B 635 REMARK 465 ILE B 636 REMARK 465 PRO B 637 REMARK 465 CYS B 638 REMARK 465 LYS B 639 REMARK 465 GLY C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS T 542 CG CD CE NZ REMARK 470 CYS T 564 SG REMARK 470 LYS B 542 CG CD CE NZ REMARK 470 CYS B 564 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 49 O HOH C 86 2.09 REMARK 500 O LYS B 606 O HOH B 74 2.13 REMARK 500 O HOH T 85 O HOH W 95 2.14 REMARK 500 OE1 GLU T 620 O HOH T 69 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS T 550 -4.08 72.76 REMARK 500 ASN W 26 -1.96 69.41 REMARK 500 LYS B 550 -5.09 70.60 REMARK 500 ASN C 26 -1.25 73.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT T 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT W 77 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT C 77 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B0B RELATED DB: PDB REMARK 900 RELATED ID: 3B0C RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DATABASE REFERENCE FOR THE CHAIN W/C DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3B0D T 531 639 UNP F1NPG5 F1NPG5_CHICK 54 162 DBREF 3B0D B 531 639 UNP F1NPG5 F1NPG5_CHICK 54 162 DBREF 3B0D W 1 76 PDB 3B0D 3B0D 1 76 DBREF 3B0D C 1 76 PDB 3B0D 3B0D 1 76 SEQADV 3B0D GLY T 529 UNP F1NPG5 EXPRESSION TAG SEQADV 3B0D SER T 530 UNP F1NPG5 EXPRESSION TAG SEQADV 3B0D GLY B 529 UNP F1NPG5 EXPRESSION TAG SEQADV 3B0D SER B 530 UNP F1NPG5 EXPRESSION TAG SEQRES 1 T 111 GLY SER THR ARG GLU PRO GLU ILE ALA SER SER LEU ILE SEQRES 2 T 111 LYS GLN ILE PHE SER HIS TYR VAL LYS THR PRO VAL THR SEQRES 3 T 111 ARG ASP ALA TYR LYS ILE VAL GLU LYS CYS SER GLU ARG SEQRES 4 T 111 TYR PHE LYS GLN ILE SER SER ASP LEU GLU ALA TYR SER SEQRES 5 T 111 GLN HIS ALA GLY ARG LYS THR VAL GLU MET ALA ASP VAL SEQRES 6 T 111 GLU LEU LEU MET ARG ARG GLN GLY LEU VAL THR ASP LYS SEQRES 7 T 111 MET PRO LEU HIS VAL LEU VAL GLU ARG HIS LEU PRO LEU SEQRES 8 T 111 GLU TYR ARG LYS LEU LEU ILE PRO ILE ALA VAL SER GLY SEQRES 9 T 111 ASN LYS VAL ILE PRO CYS LYS SEQRES 1 W 76 GLY ARG ARG THR VAL PRO ARG GLY THR LEU ARG LYS ILE SEQRES 2 W 76 ILE LYS LYS HIS LYS PRO HIS LEU ARG LEU ALA ALA ASN SEQRES 3 W 76 THR ASP LEU LEU VAL HIS LEU SER PHE LEU LEU PHE LEU SEQRES 4 W 76 HIS ARG LEU ALA GLU GLU ALA ARG THR ASN ALA PHE GLU SEQRES 5 W 76 ASN LYS CYS LYS ILE ILE LYS PRO GLU HIS THR ILE ALA SEQRES 6 W 76 ALA ALA LYS VAL ILE LEU LYS LYS SER ARG GLY SEQRES 1 B 111 GLY SER THR ARG GLU PRO GLU ILE ALA SER SER LEU ILE SEQRES 2 B 111 LYS GLN ILE PHE SER HIS TYR VAL LYS THR PRO VAL THR SEQRES 3 B 111 ARG ASP ALA TYR LYS ILE VAL GLU LYS CYS SER GLU ARG SEQRES 4 B 111 TYR PHE LYS GLN ILE SER SER ASP LEU GLU ALA TYR SER SEQRES 5 B 111 GLN HIS ALA GLY ARG LYS THR VAL GLU MET ALA ASP VAL SEQRES 6 B 111 GLU LEU LEU MET ARG ARG GLN GLY LEU VAL THR ASP LYS SEQRES 7 B 111 MET PRO LEU HIS VAL LEU VAL GLU ARG HIS LEU PRO LEU SEQRES 8 B 111 GLU TYR ARG LYS LEU LEU ILE PRO ILE ALA VAL SER GLY SEQRES 9 B 111 ASN LYS VAL ILE PRO CYS LYS SEQRES 1 C 76 GLY ARG ARG THR VAL PRO ARG GLY THR LEU ARG LYS ILE SEQRES 2 C 76 ILE LYS LYS HIS LYS PRO HIS LEU ARG LEU ALA ALA ASN SEQRES 3 C 76 THR ASP LEU LEU VAL HIS LEU SER PHE LEU LEU PHE LEU SEQRES 4 C 76 HIS ARG LEU ALA GLU GLU ALA ARG THR ASN ALA PHE GLU SEQRES 5 C 76 ASN LYS CYS LYS ILE ILE LYS PRO GLU HIS THR ILE ALA SEQRES 6 C 76 ALA ALA LYS VAL ILE LEU LYS LYS SER ARG GLY HET CIT T 2 13 HET CIT W 77 13 HET CIT B 1 13 HET CIT C 77 13 HETNAM CIT CITRIC ACID FORMUL 5 CIT 4(C6 H8 O7) FORMUL 9 HOH *125(H2 O) HELIX 1 1 ALA T 537 LYS T 550 1 14 HELIX 2 2 THR T 554 ALA T 583 1 30 HELIX 3 3 GLU T 589 GLN T 600 1 12 HELIX 4 4 PRO T 608 LEU T 617 1 10 HELIX 5 5 PRO T 618 ILE T 626 1 9 HELIX 6 11 PRO W 6 LYS W 18 1 13 HELIX 7 12 ASN W 26 ASN W 53 1 28 HELIX 8 13 LYS W 59 SER W 74 1 16 HELIX 9 6 ALA B 537 LYS B 550 1 14 HELIX 10 7 THR B 554 ALA B 583 1 30 HELIX 11 8 GLU B 589 GLN B 600 1 12 HELIX 12 9 PRO B 608 LEU B 617 1 10 HELIX 13 10 PRO B 618 ILE B 626 1 9 HELIX 14 14 PRO C 6 LYS C 18 1 13 HELIX 15 15 ASN C 26 ASN C 53 1 28 HELIX 16 16 LYS C 59 SER C 74 1 16 SHEET 1 A 2 THR T 587 VAL T 588 0 SHEET 2 A 2 ARG W 22 LEU W 23 1 O ARG W 22 N VAL T 588 SHEET 1 B 2 THR B 587 VAL B 588 0 SHEET 2 B 2 ARG C 22 LEU C 23 1 O ARG C 22 N VAL B 588 SITE 1 AC1 8 HOH T 35 HOH T 42 HIS T 547 TYR T 548 SITE 2 AC1 8 ARG T 615 HIS T 616 ARG W 3 ARG W 75 SITE 1 AC2 9 ARG T 567 LYS T 570 ARG T 615 HIS T 616 SITE 2 AC2 9 LEU W 37 HIS W 40 ARG W 41 HOH W 84 SITE 3 AC2 9 HOH W 119 SITE 1 AC3 6 HIS B 547 TYR B 548 ARG B 615 HIS B 616 SITE 2 AC3 6 ARG C 3 ARG C 75 SITE 1 AC4 10 ARG B 567 LYS B 570 LEU B 602 MET B 607 SITE 2 AC4 10 LEU B 612 ARG B 615 HIS B 616 HIS C 40 SITE 3 AC4 10 ARG C 41 HOH C 111 CRYST1 54.985 54.985 235.912 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018187 0.010500 0.000000 0.00000 SCALE2 0.000000 0.021000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004239 0.00000