HEADER CONTRACTILE PROTEIN 09-AUG-09 3A5M TITLE CRYSTAL STRUCTURE OF A DICTYOSTELIUM P109I MG2+-ACTIN IN COMPLEX WITH TITLE 2 HUMAN GELSOLIN SEGMENT 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GELSOLIN; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: GELSOLIN-LIKE 1, RESIDUES 53-176; COMPND 5 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR, ADF, BREVIN, AGEL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MAJOR ACTIN; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: ACTIN-1, ACTIN-2, ACTIN-2-SUB 1, ACTIN-4, ACTIN-5, ACTIN-6, COMPND 12 ACTIN-7, ACTIN-8, ACTIN A8, ACTIN-IEL1, ACTIN-9, ACTIN-11, ACTIN-12, COMPND 13 ACTIN A12, ACTIN-13, ACTIN-14, ACTIN-15, ACTIN A1, ACTIN III, ACTIN- COMPND 14 3A, ACTIN-16, ACTIN M6, ACTIN-19, ACTIN-20, ACTIN-21; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEIKL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 11 ORGANISM_COMMON: SLIME MOLD; SOURCE 12 ORGANISM_TAXID: 44689; SOURCE 13 EXPRESSION_SYSTEM: DICTYOSTELIUM; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 5782; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ACTIN, ADP, HYDROLYSIS, ACTIN CAPPING, ACTIN-BINDING, CYTOSKELETON, KEYWDS 2 ATP-BINDING, NUCLEOTIDE-BINDING, STRUCTURAL PROTEIN, CONTRACTILE KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MURAKAMI,T.YASUNAGA,T.Q.NOGUCHI,T.Q.UYEDA,T.WAKABAYASHI REVDAT 1 27-OCT-10 3A5M 0 JRNL AUTH K.MURAKAMI,T.YASUNAGA,T.Q.P.NOGUCHI,Y.GOMIBUCHI,K.X.NGO, JRNL AUTH 2 T.Q.P.UYEDA,T.WAKABAYASHI JRNL TITL STRUCTURAL BASIS FOR ACTIN ASSEMBLY, ACTIVATION OF ATP JRNL TITL 2 HYDROLYSIS, AND DELAYED PHOSPHATE RELEASE JRNL REF CELL(CAMBRIDGE,MASS.) V. 143 275 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20946985 JRNL DOI 10.1016/J.CELL.2010.09.034 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.277 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.151 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3928 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5329 ; 1.728 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 6.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;36.774 ;24.012 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;18.065 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;24.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2975 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1762 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2658 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.129 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.272 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 1.558 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3890 ; 2.102 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 3.710 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1439 ; 5.369 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A5M COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB028840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 20.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2ZQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.35050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.84500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.58650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.84500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.35050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.58650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET S 1 REMARK 465 GLY S 2 REMARK 465 SER S 3 REMARK 465 VAL S 4 REMARK 465 ASP C 1 REMARK 465 GLY C 2 REMARK 465 GLU C 3 REMARK 465 ASP C 4 REMARK 465 VAL C 5 REMARK 465 GLY C 46 REMARK 465 MET C 47 REMARK 465 GLY C 48 REMARK 465 GLN C 49 REMARK 465 LYS C 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 41 CB OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS C 291 CD CE NZ REMARK 480 LYS C 326 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 37 OD1 ASP C 81 1.60 REMARK 500 O HOH S 1363 O HOH S 1417 2.04 REMARK 500 OD2 ASP S 39 O HOH S 1505 2.09 REMARK 500 O HOH S 1037 O HOH S 1158 2.11 REMARK 500 OD1 ASP C 292 O HOH C 1238 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH S 1036 O HOH S 1189 3555 2.06 REMARK 500 NZ LYS S 120 O HOH S 1057 3545 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 28 CZ ARG C 28 NH1 0.105 REMARK 500 LYS C 326 CD LYS C 326 CE -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 326 CD - CE - NZ ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO S 17 154.29 -49.80 REMARK 500 PHE S 103 27.56 -141.58 REMARK 500 ASP C 179 39.58 -84.03 REMARK 500 ALA C 181 -144.42 -149.64 REMARK 500 ARG C 335 16.28 -61.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN C 6 24.4 L L OUTSIDE RANGE REMARK 500 TRP C 356 23.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA S 128 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY S 43 O REMARK 620 2 ASP S 44 OD2 72.3 REMARK 620 3 GLU S 75 OE1 79.1 109.7 REMARK 620 4 GLU S 75 OE2 112.3 86.8 48.5 REMARK 620 5 VAL S 123 O 154.7 90.0 124.8 83.7 REMARK 620 6 HOH S1031 O 99.5 169.9 62.2 91.2 99.7 REMARK 620 7 HOH S1117 O 80.2 101.1 135.1 167.0 86.0 82.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA S 129 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP S 87 OD2 REMARK 620 2 GLY S 92 O 108.9 REMARK 620 3 ALA S 94 O 79.9 102.5 REMARK 620 4 GLU C 167 OE1 96.6 143.3 107.8 REMARK 620 5 HOH C1082 O 170.2 79.7 93.7 78.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 377 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP C 376 O1B REMARK 620 2 HOH C1050 O 87.9 REMARK 620 3 HOH C1065 O 86.1 91.4 REMARK 620 4 HOH C1001 O 95.2 80.2 171.5 REMARK 620 5 ATP C 376 O2G 89.3 176.0 91.2 97.2 REMARK 620 6 HOH C1008 O 174.3 96.1 89.7 89.4 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA S 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA S 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 376 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C0F RELATED DB: PDB REMARK 900 DICTYOSTELIUM CAATP-ACTIN IN COMPLEX WITH GELSOLIN SEGMENT 1 REMARK 900 RELATED ID: 3A5L RELATED DB: PDB REMARK 900 A DICTYOSTELIUM P109A MG2+-ACTIN IN COMPLEX WITH HUMAN REMARK 900 GELSOLIN SEGMENT 1 REMARK 900 RELATED ID: 3A5N RELATED DB: PDB REMARK 900 A DICTYOSTELIUM P109A CA2+-ACTIN IN COMPLEX WITH HUMAN REMARK 900 GELSOLIN SEGMENT 1 REMARK 900 RELATED ID: 3A5O RELATED DB: PDB REMARK 900 A DICTYOSTELIUM P109I CA2+-ACTIN IN COMPLEX WITH HUMAN REMARK 900 GELSOLIN SEGMENT 1 DBREF 3A5M S 4 127 UNP P06396 GELS_HUMAN 53 176 DBREF 3A5M C 1 375 UNP P07830 ACT1_DICDI 2 376 SEQADV 3A5M MET S 1 UNP P06396 INITIATING METHIONINE SEQADV 3A5M GLY S 2 UNP P06396 EXPRESSION TAG SEQADV 3A5M SER S 3 UNP P06396 EXPRESSION TAG SEQADV 3A5M CYS S 35 UNP P06396 ASN 84 ENGINEERED MUTATION SEQADV 3A5M ILE C 109 UNP P07830 PRO 110 ENGINEERED MUTATION SEQADV 3A5M ALA C 205 UNP P07830 GLU 206 ENGINEERED MUTATION SEQADV 3A5M ALA C 206 UNP P07830 ARG 207 ENGINEERED MUTATION SEQADV 3A5M ALA C 207 UNP P07830 GLU 208 ENGINEERED MUTATION SEQRES 1 S 127 MET GLY SER VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA SEQRES 2 S 127 GLY LYS GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS SEQRES 3 S 127 PHE ASP LEU VAL PRO VAL PRO THR CYS LEU TYR GLY ASP SEQRES 4 S 127 PHE PHE THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL SEQRES 5 S 127 GLN LEU ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR SEQRES 6 S 127 TRP LEU GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA SEQRES 7 S 127 ALA ALA ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN SEQRES 8 S 127 GLY ARG ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SEQRES 9 S 127 SER ALA THR PHE LEU GLY TYR PHE LYS SER GLY LEU LYS SEQRES 10 S 127 TYR LYS LYS GLY GLY VAL ALA SER GLY PHE SEQRES 1 C 375 ASP GLY GLU ASP VAL GLN ALA LEU VAL ILE ASP ASN GLY SEQRES 2 C 375 SER GLY MET CYS LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 C 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 C 375 HIS THR GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 C 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 C 375 THR LEU LYS TYR PRO ILE GLU HIC GLY ILE VAL THR ASN SEQRES 7 C 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 C 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO VAL LEU SEQRES 9 C 375 LEU THR GLU ALA ILE LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 C 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN THR PRO SEQRES 11 C 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 C 375 ALA SER GLY ARG THR THR GLY ILE VAL MET ASP SER GLY SEQRES 13 C 375 ASP GLY VAL SER HIS THR VAL PRO ILE TYR GLU GLY TYR SEQRES 14 C 375 ALA LEU PRO HIS ALA ILE LEU ARG LEU ASP LEU ALA GLY SEQRES 15 C 375 ARG ASP LEU THR ASP TYR MET MET LYS ILE LEU THR GLU SEQRES 16 C 375 ARG GLY TYR SER PHE THR THR THR ALA ALA ALA ALA ILE SEQRES 17 C 375 VAL ARG ASP ILE LYS GLU LYS LEU ALA TYR VAL ALA LEU SEQRES 18 C 375 ASP PHE GLU ALA GLU MET GLN THR ALA ALA SER SER SER SEQRES 19 C 375 ALA LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 C 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU ALA SEQRES 21 C 375 LEU PHE GLN PRO SER PHE LEU GLY MET GLU SER ALA GLY SEQRES 22 C 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 C 375 VAL ASP ILE ARG LYS ASP LEU TYR GLY ASN VAL VAL LEU SEQRES 24 C 375 SER GLY GLY THR THR MET PHE PRO GLY ILE ALA ASP ARG SEQRES 25 C 375 MET ASN LYS GLU LEU THR ALA LEU ALA PRO SER THR MET SEQRES 26 C 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 C 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 C 375 PHE GLN GLN MET TRP ILE SER LYS GLU GLU TYR ASP GLU SEQRES 29 C 375 SER GLY PRO SER ILE VAL HIS ARG LYS CYS PHE MODRES 3A5M HIC C 73 HIS 4-METHYL-HISTIDINE HET HIC C 73 11 HET CA S 128 1 HET CA S 129 1 HET MG C 377 1 HET ATP C 376 31 HETNAM HIC 4-METHYL-HISTIDINE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 HIC C7 H11 N3 O2 FORMUL 3 CA 2(CA 2+) FORMUL 5 MG MG 2+ FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 7 HOH *358(H2 O) HELIX 1 1 HIS S 7 LYS S 12 1 6 HELIX 2 2 PRO S 33 TYR S 37 5 5 HELIX 3 3 SER S 72 LEU S 90 1 19 HELIX 4 4 SER S 105 TYR S 111 1 7 HELIX 5 5 GLY C 55 LYS C 61 1 7 HELIX 6 6 ASN C 78 ASN C 92 1 15 HELIX 7 7 ALA C 97 HIS C 101 5 5 HELIX 8 8 PRO C 112 THR C 126 1 15 HELIX 9 9 GLN C 137 SER C 145 1 9 HELIX 10 10 PRO C 172 ILE C 175 5 4 HELIX 11 11 ALA C 181 GLY C 197 1 17 HELIX 12 12 ALA C 204 ALA C 217 1 14 HELIX 13 13 ASP C 222 SER C 232 1 11 HELIX 14 14 ASN C 252 GLN C 263 1 12 HELIX 15 15 PRO C 264 GLY C 268 5 5 HELIX 16 16 GLY C 273 LYS C 284 1 12 HELIX 17 17 ILE C 289 GLY C 295 1 7 HELIX 18 18 GLY C 301 MET C 305 5 5 HELIX 19 19 GLY C 308 ALA C 321 1 14 HELIX 20 20 TYR C 337 LEU C 349 1 13 HELIX 21 21 THR C 351 MET C 355 5 5 HELIX 22 22 LYS C 359 GLY C 366 1 8 HELIX 23 23 ILE C 369 CYS C 374 1 6 SHEET 1 A 5 ASP S 28 PRO S 31 0 SHEET 2 A 5 GLY S 18 GLU S 25 -1 N ARG S 23 O VAL S 30 SHEET 3 A 5 ALA S 45 GLN S 53 -1 O THR S 51 N GLY S 18 SHEET 4 A 5 LEU S 59 LEU S 67 -1 O HIS S 64 N ILE S 48 SHEET 5 A 5 ALA S 94 VAL S 100 1 O VAL S 95 N LEU S 63 SHEET 1 B 2 ASP S 39 PHE S 41 0 SHEET 2 B 2 LYS S 117 LYS S 119 1 O LYS S 117 N PHE S 40 SHEET 1 C 6 ALA C 29 PRO C 32 0 SHEET 2 C 6 MET C 16 PHE C 21 -1 N CYS C 17 O PHE C 31 SHEET 3 C 6 LEU C 8 ASN C 12 -1 N ASP C 11 O LYS C 18 SHEET 4 C 6 VAL C 103 GLU C 107 1 O LEU C 104 N LEU C 8 SHEET 5 C 6 ALA C 131 ILE C 136 1 O TYR C 133 N LEU C 105 SHEET 6 C 6 ILE C 357 SER C 358 -1 O ILE C 357 N MET C 132 SHEET 1 D 3 TYR C 53 VAL C 54 0 SHEET 2 D 3 VAL C 35 PRO C 38 -1 N GLY C 36 O TYR C 53 SHEET 3 D 3 LEU C 65 LYS C 68 -1 O THR C 66 N ARG C 37 SHEET 1 E 2 ILE C 71 GLU C 72 0 SHEET 2 E 2 ILE C 75 VAL C 76 -1 O ILE C 75 N GLU C 72 SHEET 1 F 3 TYR C 169 ALA C 170 0 SHEET 2 F 3 SER C 160 TYR C 166 -1 N TYR C 166 O TYR C 169 SHEET 3 F 3 LEU C 176 LEU C 178 -1 O LEU C 178 N SER C 160 SHEET 1 G 5 TYR C 169 ALA C 170 0 SHEET 2 G 5 SER C 160 TYR C 166 -1 N TYR C 166 O TYR C 169 SHEET 3 G 5 GLY C 150 SER C 155 -1 N GLY C 150 O ILE C 165 SHEET 4 G 5 VAL C 297 SER C 300 1 O VAL C 298 N MET C 153 SHEET 5 G 5 ILE C 329 ILE C 330 1 O ILE C 330 N VAL C 297 SHEET 1 H 2 LYS C 238 GLU C 241 0 SHEET 2 H 2 VAL C 247 ILE C 250 -1 O ILE C 250 N LYS C 238 LINK C GLU C 72 N HIC C 73 1555 1555 1.34 LINK C HIC C 73 N GLY C 74 1555 1555 1.34 LINK O GLY S 43 CA CA S 128 1555 1555 2.21 LINK OD2 ASP S 44 CA CA S 128 1555 1555 2.35 LINK OE1 GLU S 75 CA CA S 128 1555 1555 2.72 LINK OE2 GLU S 75 CA CA S 128 1555 1555 2.45 LINK OD2 ASP S 87 CA CA S 129 1555 1555 2.37 LINK O GLY S 92 CA CA S 129 1555 1555 2.99 LINK O ALA S 94 CA CA S 129 1555 1555 2.43 LINK O VAL S 123 CA CA S 128 1555 1555 2.26 LINK OE1 GLU C 167 CA CA S 129 1555 1555 2.67 LINK CA CA S 128 O HOH S1031 1555 1555 2.35 LINK CA CA S 128 O HOH S1117 1555 1555 2.66 LINK MG MG C 377 O1B ATP C 376 1555 1555 2.18 LINK MG MG C 377 O HOH C1050 1555 1555 2.02 LINK MG MG C 377 O HOH C1065 1555 1555 2.19 LINK MG MG C 377 O HOH C1001 1555 1555 2.10 LINK MG MG C 377 O2G ATP C 376 1555 1555 2.13 LINK MG MG C 377 O HOH C1008 1555 1555 2.12 LINK CA CA S 129 O HOH C1082 1555 1555 3.12 SITE 1 AC1 6 GLY S 43 ASP S 44 GLU S 75 VAL S 123 SITE 2 AC1 6 HOH S1031 HOH S1117 SITE 1 AC2 4 GLU C 167 ASP S 87 GLY S 92 ALA S 94 SITE 1 AC3 5 ATP C 376 HOH C1001 HOH C1008 HOH C1050 SITE 2 AC3 5 HOH C1065 SITE 1 AC4 30 GLY C 13 SER C 14 GLY C 15 MET C 16 SITE 2 AC4 30 LYS C 18 GLY C 156 ASP C 157 GLY C 182 SITE 3 AC4 30 ARG C 210 LYS C 213 GLU C 214 GLY C 301 SITE 4 AC4 30 GLY C 302 THR C 303 MET C 305 PHE C 306 SITE 5 AC4 30 MG C 377 HOH C1008 HOH C1009 HOH C1050 SITE 6 AC4 30 HOH C1065 HOH C1108 HOH C1134 HOH C1164 SITE 7 AC4 30 HOH C1203 HOH C1222 HOH C1243 HOH C1305 SITE 8 AC4 30 HOH C1364 HOH C2001 CRYST1 56.701 69.173 181.690 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005504 0.00000