HEADER LYASE 04-APR-07 2YSW TITLE CRYSTAL STRUCTURE OF THE 3-DEHYDROQUINATE DEHYDRATASE FROM AQUIFEX TITLE 2 AEOLICUS VF5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 3-DEHYDROQUINASE, TYPE I DHQASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS-RIL-X; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS 3-DEHYDROQUINATE DEHYDRATASE, AQUIFEX AEOLICUS VF5, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TANAKA,T.S.KUMAREVEL,A.EBIHARA,L.CHEN,Z.Q.FU,J.CHRZAS,B.C.WANG, AUTHOR 2 S.KURAMITSU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2YSW 1 VERSN REVDAT 2 24-FEB-09 2YSW 1 VERSN REVDAT 1 09-OCT-07 2YSW 0 JRNL AUTH T.S.KUMAREVEL,T.TANAKA,S.KURAMITSU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE 3-DEHYDROQUINATE DEHYDRATASE FROM JRNL TITL 2 AQUIFEX AEOLICUS VF5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4015365.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 45179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2239 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6782 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 334 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.13 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.320 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.430 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 42.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA_REP.PARAM REMARK 3 TOPOLOGY FILE 4 : ION.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 180.0 REMARK 200 PH : 4.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 26.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2EGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 44% MPD, 0.1M ACETATE NAOH, 0.05M REMARK 280 MAGNESIUM CHLORIDE, PH 4.80, LIQUID DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.00600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.89800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.89800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.00900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.89800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.89800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.00300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.89800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.89800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.00900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.89800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.89800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.00300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.00600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.00600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 194 CB ALA A 198 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 280 O HOH C 280 7555 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 196 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 197 100.89 -54.29 REMARK 500 PHE A 199 5.62 -154.27 REMARK 500 LYS B 71 -70.77 -47.22 REMARK 500 ASN B 72 21.99 -72.48 REMARK 500 GLU B 196 -69.98 -106.04 REMARK 500 TYR B 217 58.00 -119.73 REMARK 500 ASP C 8 -162.96 -105.54 REMARK 500 THR C 10 109.23 -55.68 REMARK 500 PHE C 12 -78.53 -50.16 REMARK 500 VAL C 31 12.96 -60.17 REMARK 500 ASN C 72 32.40 -83.34 REMARK 500 GLU C 196 -94.39 -114.77 REMARK 500 ALA C 200 152.45 50.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 199 ALA A 200 149.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU B 196 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EGZ RELATED DB: PDB REMARK 900 DIFFERENT SPACE GROUP REMARK 900 RELATED ID: AAE001000021.2 RELATED DB: TARGETDB DBREF 2YSW A 1 219 UNP O66440 AROD_AQUAE 1 219 DBREF 2YSW B 1 219 UNP O66440 AROD_AQUAE 1 219 DBREF 2YSW C 1 219 UNP O66440 AROD_AQUAE 1 219 SEQRES 1 A 219 MET LEU ILE ALA VAL PRO LEU ASP ASP THR ASN PHE SER SEQRES 2 A 219 GLU ASN LEU LYS LYS ALA LYS GLU LYS GLY ALA ASP ILE SEQRES 3 A 219 VAL GLU LEU ARG VAL ASP GLN PHE SER ASP THR SER LEU SEQRES 4 A 219 ASN TYR VAL LYS GLU LYS LEU GLU GLU VAL HIS SER GLN SEQRES 5 A 219 GLY LEU LYS THR ILE LEU THR ILE ARG SER PRO GLU GLU SEQRES 6 A 219 GLY GLY ARG GLU VAL LYS ASN ARG GLU GLU LEU PHE GLU SEQRES 7 A 219 GLU LEU SER PRO LEU SER ASP TYR THR ASP ILE GLU LEU SEQRES 8 A 219 SER SER ARG GLY LEU LEU VAL LYS LEU TYR ASN ILE THR SEQRES 9 A 219 LYS GLU ALA GLY LYS LYS LEU ILE ILE SER TYR HIS ASN SEQRES 10 A 219 PHE GLU LEU THR PRO PRO ASN TRP ILE ILE ARG GLU VAL SEQRES 11 A 219 LEU ARG GLU GLY TYR ARG TYR GLY GLY ILE PRO LYS ILE SEQRES 12 A 219 ALA VAL LYS ALA ASN SER TYR GLU ASP VAL ALA ARG LEU SEQRES 13 A 219 LEU CYS ILE SER ARG GLN VAL GLU GLY GLU LYS ILE LEU SEQRES 14 A 219 ILE SER MET GLY ASP TYR GLY LYS ILE SER ARG LEU ALA SEQRES 15 A 219 GLY TYR VAL PHE GLY SER VAL ILE THR TYR CYS SER LEU SEQRES 16 A 219 GLU LYS ALA PHE ALA PRO GLY GLN ILE PRO LEU GLU GLU SEQRES 17 A 219 MET VAL GLU LEU ARG LYS LYS PHE TYR ARG LEU SEQRES 1 B 219 MET LEU ILE ALA VAL PRO LEU ASP ASP THR ASN PHE SER SEQRES 2 B 219 GLU ASN LEU LYS LYS ALA LYS GLU LYS GLY ALA ASP ILE SEQRES 3 B 219 VAL GLU LEU ARG VAL ASP GLN PHE SER ASP THR SER LEU SEQRES 4 B 219 ASN TYR VAL LYS GLU LYS LEU GLU GLU VAL HIS SER GLN SEQRES 5 B 219 GLY LEU LYS THR ILE LEU THR ILE ARG SER PRO GLU GLU SEQRES 6 B 219 GLY GLY ARG GLU VAL LYS ASN ARG GLU GLU LEU PHE GLU SEQRES 7 B 219 GLU LEU SER PRO LEU SER ASP TYR THR ASP ILE GLU LEU SEQRES 8 B 219 SER SER ARG GLY LEU LEU VAL LYS LEU TYR ASN ILE THR SEQRES 9 B 219 LYS GLU ALA GLY LYS LYS LEU ILE ILE SER TYR HIS ASN SEQRES 10 B 219 PHE GLU LEU THR PRO PRO ASN TRP ILE ILE ARG GLU VAL SEQRES 11 B 219 LEU ARG GLU GLY TYR ARG TYR GLY GLY ILE PRO LYS ILE SEQRES 12 B 219 ALA VAL LYS ALA ASN SER TYR GLU ASP VAL ALA ARG LEU SEQRES 13 B 219 LEU CYS ILE SER ARG GLN VAL GLU GLY GLU LYS ILE LEU SEQRES 14 B 219 ILE SER MET GLY ASP TYR GLY LYS ILE SER ARG LEU ALA SEQRES 15 B 219 GLY TYR VAL PHE GLY SER VAL ILE THR TYR CYS SER LEU SEQRES 16 B 219 GLU LYS ALA PHE ALA PRO GLY GLN ILE PRO LEU GLU GLU SEQRES 17 B 219 MET VAL GLU LEU ARG LYS LYS PHE TYR ARG LEU SEQRES 1 C 219 MET LEU ILE ALA VAL PRO LEU ASP ASP THR ASN PHE SER SEQRES 2 C 219 GLU ASN LEU LYS LYS ALA LYS GLU LYS GLY ALA ASP ILE SEQRES 3 C 219 VAL GLU LEU ARG VAL ASP GLN PHE SER ASP THR SER LEU SEQRES 4 C 219 ASN TYR VAL LYS GLU LYS LEU GLU GLU VAL HIS SER GLN SEQRES 5 C 219 GLY LEU LYS THR ILE LEU THR ILE ARG SER PRO GLU GLU SEQRES 6 C 219 GLY GLY ARG GLU VAL LYS ASN ARG GLU GLU LEU PHE GLU SEQRES 7 C 219 GLU LEU SER PRO LEU SER ASP TYR THR ASP ILE GLU LEU SEQRES 8 C 219 SER SER ARG GLY LEU LEU VAL LYS LEU TYR ASN ILE THR SEQRES 9 C 219 LYS GLU ALA GLY LYS LYS LEU ILE ILE SER TYR HIS ASN SEQRES 10 C 219 PHE GLU LEU THR PRO PRO ASN TRP ILE ILE ARG GLU VAL SEQRES 11 C 219 LEU ARG GLU GLY TYR ARG TYR GLY GLY ILE PRO LYS ILE SEQRES 12 C 219 ALA VAL LYS ALA ASN SER TYR GLU ASP VAL ALA ARG LEU SEQRES 13 C 219 LEU CYS ILE SER ARG GLN VAL GLU GLY GLU LYS ILE LEU SEQRES 14 C 219 ILE SER MET GLY ASP TYR GLY LYS ILE SER ARG LEU ALA SEQRES 15 C 219 GLY TYR VAL PHE GLY SER VAL ILE THR TYR CYS SER LEU SEQRES 16 C 219 GLU LYS ALA PHE ALA PRO GLY GLN ILE PRO LEU GLU GLU SEQRES 17 C 219 MET VAL GLU LEU ARG LYS LYS PHE TYR ARG LEU FORMUL 4 HOH *231(H2 O) HELIX 1 1 ASN A 11 LYS A 22 1 12 HELIX 2 2 ASP A 32 PHE A 34 5 3 HELIX 3 3 SER A 38 GLN A 52 1 15 HELIX 4 4 ASN A 72 SER A 81 1 10 HELIX 5 5 PRO A 82 SER A 84 5 3 HELIX 6 6 SER A 93 GLY A 108 1 16 HELIX 7 7 PRO A 123 TYR A 137 1 15 HELIX 8 8 SER A 149 ARG A 161 1 13 HELIX 9 9 ILE A 178 GLY A 183 1 6 HELIX 10 10 TYR A 184 GLY A 187 5 4 HELIX 11 11 PRO A 205 TYR A 217 1 13 HELIX 12 12 ASN B 11 LYS B 22 1 12 HELIX 13 13 ASP B 32 PHE B 34 5 3 HELIX 14 14 SER B 38 GLN B 52 1 15 HELIX 15 15 SER B 62 GLY B 66 5 5 HELIX 16 16 ASN B 72 SER B 81 1 10 HELIX 17 17 PRO B 82 SER B 84 5 3 HELIX 18 18 SER B 93 ALA B 107 1 15 HELIX 19 19 PRO B 123 TYR B 137 1 15 HELIX 20 20 SER B 149 ARG B 161 1 13 HELIX 21 21 ASP B 174 LYS B 177 5 4 HELIX 22 22 ILE B 178 GLY B 183 1 6 HELIX 23 23 TYR B 184 GLY B 187 5 4 HELIX 24 24 PRO B 205 TYR B 217 1 13 HELIX 25 25 ASN C 11 GLY C 23 1 13 HELIX 26 26 SER C 38 GLN C 52 1 15 HELIX 27 27 SER C 62 GLY C 66 5 5 HELIX 28 28 ASN C 72 SER C 81 1 10 HELIX 29 29 SER C 93 ALA C 107 1 15 HELIX 30 30 PRO C 123 TYR C 137 1 15 HELIX 31 31 SER C 149 ARG C 161 1 13 HELIX 32 32 ILE C 178 GLY C 183 1 6 HELIX 33 33 TYR C 184 GLY C 187 5 4 HELIX 34 34 PRO C 205 TYR C 217 1 13 SHEET 1 A 8 ILE A 168 MET A 172 0 SHEET 2 A 8 ILE A 140 LYS A 146 1 N ILE A 143 O ILE A 170 SHEET 3 A 8 LYS A 110 ASN A 117 1 N LEU A 111 O ILE A 140 SHEET 4 A 8 TYR A 86 GLU A 90 1 N ILE A 89 O ILE A 112 SHEET 5 A 8 LYS A 55 THR A 59 1 N LEU A 58 O TYR A 86 SHEET 6 A 8 ILE A 26 ARG A 30 1 N LEU A 29 O ILE A 57 SHEET 7 A 8 LEU A 2 LEU A 7 1 N LEU A 7 O GLU A 28 SHEET 8 A 8 ILE A 190 TYR A 192 1 O THR A 191 N ALA A 4 SHEET 1 B 8 ILE B 168 MET B 172 0 SHEET 2 B 8 ILE B 140 LYS B 146 1 N ILE B 143 O ILE B 168 SHEET 3 B 8 LYS B 110 ASN B 117 1 N LEU B 111 O ILE B 140 SHEET 4 B 8 TYR B 86 GLU B 90 1 N THR B 87 O ILE B 112 SHEET 5 B 8 LYS B 55 THR B 59 1 N LEU B 58 O ASP B 88 SHEET 6 B 8 ILE B 26 ARG B 30 1 N VAL B 27 O LYS B 55 SHEET 7 B 8 LEU B 2 LEU B 7 1 N LEU B 7 O GLU B 28 SHEET 8 B 8 ILE B 190 TYR B 192 1 O THR B 191 N ALA B 4 SHEET 1 C 8 ILE C 168 MET C 172 0 SHEET 2 C 8 ILE C 140 LYS C 146 1 N ILE C 143 O ILE C 170 SHEET 3 C 8 LYS C 110 ASN C 117 1 N LEU C 111 O ILE C 140 SHEET 4 C 8 TYR C 86 GLU C 90 1 N THR C 87 O ILE C 112 SHEET 5 C 8 LYS C 55 THR C 59 1 N LEU C 58 O TYR C 86 SHEET 6 C 8 ILE C 26 ARG C 30 1 N VAL C 27 O LYS C 55 SHEET 7 C 8 LEU C 2 LEU C 7 1 N LEU C 7 O GLU C 28 SHEET 8 C 8 ILE C 190 TYR C 192 1 O THR C 191 N ALA C 4 SSBOND 1 CYS A 158 CYS B 158 1555 1555 2.04 SSBOND 2 CYS C 158 CYS C 158 1555 8555 2.16 CRYST1 131.796 131.796 108.012 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009258 0.00000