HEADER SIGNALING PROTEIN 03-APR-07 2YSR TITLE SOLUTION STRUCTURE OF THE DEP DOMAIN FROM HUMAN DEP DOMAIN- TITLE 2 CONTAINING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEP DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEP DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEPDC1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060904-15; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DEP DOMAIN; DEP DOMAIN CONTAINING 1, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.P.ZHANG,F.HAYAHSI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2YSR 1 VERSN REVDAT 1 09-OCT-07 2YSR 0 JRNL AUTH H.P.ZHANG,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DEP DOMAIN FROM HUMAN JRNL TITL 2 DEP DOMAIN-CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YSR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB027087. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.65MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9818, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID FOR 3D_15N_DEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 104 -174.93 -69.69 REMARK 500 2 PRO A 26 -178.16 -69.74 REMARK 500 2 ASN A 97 177.17 -57.21 REMARK 500 3 GLN A 32 102.07 -55.85 REMARK 500 4 PRO A 26 -176.80 -69.78 REMARK 500 5 PRO A 26 6.24 -69.71 REMARK 500 5 ARG A 28 -67.55 -97.92 REMARK 500 5 PRO A 62 2.96 -69.80 REMARK 500 5 ILE A 85 -34.29 -39.76 REMARK 500 5 ASN A 97 178.58 -54.16 REMARK 500 6 GLN A 99 102.91 -55.05 REMARK 500 7 ASN A 93 102.98 -58.26 REMARK 500 7 ASN A 97 178.86 -56.47 REMARK 500 8 ASN A 39 106.79 -58.06 REMARK 500 8 PRO A 62 3.03 -69.82 REMARK 500 8 ASP A 96 101.98 -52.12 REMARK 500 8 GLN A 99 102.46 -53.64 REMARK 500 8 PRO A 104 -177.78 -69.76 REMARK 500 9 PRO A 26 -175.40 -69.79 REMARK 500 9 HIS A 30 -63.84 -91.47 REMARK 500 9 PHE A 34 178.46 -59.75 REMARK 500 9 LYS A 36 175.02 -52.02 REMARK 500 9 ASN A 97 178.12 -53.57 REMARK 500 10 PRO A 104 -172.39 -69.76 REMARK 500 11 ILE A 85 -34.76 -38.72 REMARK 500 12 MET A 25 107.35 -52.06 REMARK 500 12 PRO A 26 6.85 -69.75 REMARK 500 12 LYS A 35 102.30 -59.95 REMARK 500 12 ASN A 57 174.16 -56.95 REMARK 500 13 PRO A 62 3.02 -69.74 REMARK 500 13 ASN A 97 172.77 -57.47 REMARK 500 13 GLN A 99 108.16 -58.41 REMARK 500 14 GLN A 32 109.10 -54.29 REMARK 500 14 PHE A 34 175.79 -53.35 REMARK 500 14 ASN A 39 103.96 -52.22 REMARK 500 14 PRO A 62 2.92 -69.74 REMARK 500 15 LYS A 35 102.04 -52.17 REMARK 500 15 TRP A 89 104.85 -57.97 REMARK 500 15 ASN A 97 178.28 -56.81 REMARK 500 16 PRO A 26 3.55 -69.70 REMARK 500 16 LYS A 35 101.97 -56.67 REMARK 500 16 ASN A 97 178.09 -58.40 REMARK 500 17 PRO A 26 -175.14 -69.74 REMARK 500 17 LEU A 73 -37.76 -38.99 REMARK 500 17 ASN A 97 178.81 -54.55 REMARK 500 18 ASN A 93 103.88 -52.08 REMARK 500 18 PRO A 104 -173.57 -69.82 REMARK 500 19 LYS A 36 179.96 -52.31 REMARK 500 19 ILE A 85 -34.81 -39.97 REMARK 500 19 PRO A 104 -172.67 -69.80 REMARK 500 20 GLN A 32 171.78 -58.49 REMARK 500 20 ASP A 84 177.68 -54.90 REMARK 500 20 ASN A 93 101.98 -53.54 REMARK 500 20 ASN A 97 -64.78 -91.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001104035.1 RELATED DB: TARGETDB DBREF 2YSR A 8 105 UNP Q5TB30 Q5TB30_HUMAN 11 108 SEQADV 2YSR GLY A 1 UNP Q5TB30 EXPRESSION TAG SEQADV 2YSR SER A 2 UNP Q5TB30 EXPRESSION TAG SEQADV 2YSR SER A 3 UNP Q5TB30 EXPRESSION TAG SEQADV 2YSR GLY A 4 UNP Q5TB30 EXPRESSION TAG SEQADV 2YSR SER A 5 UNP Q5TB30 EXPRESSION TAG SEQADV 2YSR SER A 6 UNP Q5TB30 EXPRESSION TAG SEQADV 2YSR GLY A 7 UNP Q5TB30 EXPRESSION TAG SEQRES 1 A 105 GLY SER SER GLY SER SER GLY TYR ARG ALA THR LYS LEU SEQRES 2 A 105 TRP ASN GLU VAL THR THR SER PHE ARG ALA GLY MET PRO SEQRES 3 A 105 LEU ARG LYS HIS ARG GLN HIS PHE LYS LYS TYR GLY ASN SEQRES 4 A 105 CYS PHE THR ALA GLY GLU ALA VAL ASP TRP LEU TYR ASP SEQRES 5 A 105 LEU LEU ARG ASN ASN SER ASN PHE GLY PRO GLU VAL THR SEQRES 6 A 105 ARG GLN GLN THR ILE GLN LEU LEU ARG LYS PHE LEU LYS SEQRES 7 A 105 ASN HIS VAL ILE GLU ASP ILE LYS GLY ARG TRP GLY SER SEQRES 8 A 105 GLU ASN VAL ASP ASP ASN ASN GLN LEU PHE ARG PHE PRO SEQRES 9 A 105 ALA HELIX 1 1 GLY A 7 GLY A 24 1 18 HELIX 2 2 ALA A 43 ASN A 57 1 15 HELIX 3 3 THR A 65 ASN A 79 1 15 SHEET 1 A 3 PHE A 41 THR A 42 0 SHEET 2 A 3 LEU A 100 ARG A 102 -1 O PHE A 101 N PHE A 41 SHEET 3 A 3 GLU A 83 ASP A 84 -1 N GLU A 83 O ARG A 102 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20