HEADER TRANSCRIPTION 31-MAR-10 2XAQ TITLE CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX WITH A TITLE 2 TRANYLCYPROMINE DERIVATIVE (MC2584, 13B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYSINE-SPECIFIC HISTONE DEMETHYLASE LSD1, COMPND 5 FLAVIN-CONTAINING AMINE OXIDASE DOMAIN-CONTAINING PROTEIN COMPND 6 2, BRAF35-HDAC COMPLEX PROTEIN BHC110; COMPND 7 EC: 1.-.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: REST COREPRESSOR 1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: COREPRESSOR COREST, PROTEIN COREST; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINE OXIDASE, CHROMATIN REGULATOR, HISTONE INHIBITOR KEYWDS 2 BINDING, METHYLATION, NUCLEOSOME CORE, OXIDOREDUCTASE, KEYWDS 3 OXIDOREDUCTASE/REPRESSOR COMPLEX, CHROMATIN REMODELLING, KEYWDS 4 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.BINDA,S.VALENTE,M.ROMANENGHI,S.PILOTTO,R.CIRILLI, AUTHOR 2 A.KARYTINOS,G.CIOSSANI,O.A.BOTRUGNO,F.FORNERIS,M.TARDUGNO, AUTHOR 3 D.E.EDMONDSON,S.MINUCCI,A.MATTEVI,A.MAI REVDAT 2 12-OCT-11 2XAQ 1 JRNL REMARK VERSN REVDAT 1 05-MAY-10 2XAQ 0 JRNL AUTH C.BINDA,S.VALENTE,M.ROMANENGHI,S.PILOTTO,R.CIRILLI, JRNL AUTH 2 A.KARYTINOS,G.CIOSSANI,O.A.BOTRUGNO,F.FORNERIS, JRNL AUTH 3 M.TARDUGNO,D.E.EDMONDSON,S.MINUCCI,A.MATTEVI,A.MAI JRNL TITL BIOCHEMICAL, STRUCTURAL, AND BIOLOGICAL EVALUATION JRNL TITL 2 OF TRANYLCYPROMINE DERIVATIVES AS INHIBITORS OF JRNL TITL 3 HISTONE DEMETHYLASES LSD1 AND LSD2. JRNL REF J.AM.CHEM.SOC. V. 132 6827 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20415477 JRNL DOI 10.1021/JA101557K REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.96 REMARK 3 NUMBER OF REFLECTIONS : 41775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.24324 REMARK 3 R VALUE (WORKING SET) : 0.24280 REMARK 3 FREE R VALUE : 0.26380 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.9 REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.200 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.283 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3052 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.433 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.449 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.591 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.58 REMARK 3 B22 (A**2) : -16.40 REMARK 3 B33 (A**2) : 4.81 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.489 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.280 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6501 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8821 ; 2.074 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 797 ; 8.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;41.070 ;24.475 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1130 ;24.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;21.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 987 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4898 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3984 ; 0.924 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6437 ; 1.739 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2517 ; 2.107 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2384 ; 3.730 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2XAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-10. REMARK 100 THE PDBE ID CODE IS EBI-43520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42599 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.20 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.1 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.8 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM-POTASSIUM TARTRATE, ADA REMARK 280 BUFFER PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.05100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.17300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.96400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.05100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.17300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.96400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.05100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.17300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.96400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.05100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.17300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.96400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 THR A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 GLU A 36 REMARK 465 VAL A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 GLN A 40 REMARK 465 PRO A 41 REMARK 465 ALA A 42 REMARK 465 GLY A 43 REMARK 465 LEU A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 PRO A 47 REMARK 465 ALA A 48 REMARK 465 GLU A 49 REMARK 465 VAL A 50 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 ALA A 54 REMARK 465 VAL A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 ARG A 58 REMARK 465 THR A 59 REMARK 465 PRO A 60 REMARK 465 ARG A 61 REMARK 465 LYS A 62 REMARK 465 LYS A 63 REMARK 465 GLU A 64 REMARK 465 PRO A 65 REMARK 465 PRO A 66 REMARK 465 ARG A 67 REMARK 465 ALA A 68 REMARK 465 SER A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 GLY A 72 REMARK 465 GLY A 73 REMARK 465 LEU A 74 REMARK 465 ALA A 75 REMARK 465 GLU A 76 REMARK 465 PRO A 77 REMARK 465 PRO A 78 REMARK 465 GLY A 79 REMARK 465 SER A 80 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLN A 84 REMARK 465 ALA A 85 REMARK 465 GLY A 86 REMARK 465 PRO A 87 REMARK 465 THR A 88 REMARK 465 VAL A 89 REMARK 465 VAL A 90 REMARK 465 PRO A 91 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 ALA A 94 REMARK 465 THR A 95 REMARK 465 PRO A 96 REMARK 465 MET A 97 REMARK 465 GLU A 98 REMARK 465 THR A 99 REMARK 465 GLY A 100 REMARK 465 ILE A 101 REMARK 465 ALA A 102 REMARK 465 GLU A 103 REMARK 465 THR A 104 REMARK 465 PRO A 105 REMARK 465 GLU A 106 REMARK 465 GLY A 107 REMARK 465 ARG A 108 REMARK 465 ARG A 109 REMARK 465 THR A 110 REMARK 465 SER A 111 REMARK 465 ARG A 112 REMARK 465 ARG A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 115 REMARK 465 ALA A 116 REMARK 465 LYS A 117 REMARK 465 VAL A 118 REMARK 465 GLU A 119 REMARK 465 TYR A 120 REMARK 465 ARG A 121 REMARK 465 GLU A 122 REMARK 465 MET A 123 REMARK 465 ASP A 124 REMARK 465 GLU A 125 REMARK 465 SER A 126 REMARK 465 LEU A 127 REMARK 465 ALA A 128 REMARK 465 ASN A 129 REMARK 465 LEU A 130 REMARK 465 SER A 131 REMARK 465 GLU A 132 REMARK 465 ASP A 133 REMARK 465 GLU A 134 REMARK 465 TYR A 135 REMARK 465 TYR A 136 REMARK 465 SER A 137 REMARK 465 GLU A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 ARG A 141 REMARK 465 ASN A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 GLU A 146 REMARK 465 LYS A 147 REMARK 465 GLU A 148 REMARK 465 LYS A 149 REMARK 465 LYS A 150 REMARK 465 LEU A 151 REMARK 465 PRO A 152 REMARK 465 PRO A 153 REMARK 465 PRO A 154 REMARK 465 PRO A 155 REMARK 465 PRO A 156 REMARK 465 GLN A 157 REMARK 465 ALA A 158 REMARK 465 PRO A 159 REMARK 465 PRO A 160 REMARK 465 GLU A 161 REMARK 465 GLU A 162 REMARK 465 GLU A 163 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 PRO A 168 REMARK 465 GLU A 169 REMARK 465 GLU A 170 REMARK 465 PRO A 837 REMARK 465 ARG A 838 REMARK 465 GLN A 839 REMARK 465 ALA A 840 REMARK 465 THR A 841 REMARK 465 PRO A 842 REMARK 465 GLY A 843 REMARK 465 VAL A 844 REMARK 465 PRO A 845 REMARK 465 ALA A 846 REMARK 465 GLN A 847 REMARK 465 GLN A 848 REMARK 465 SER A 849 REMARK 465 PRO A 850 REMARK 465 SER A 851 REMARK 465 MET A 852 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 VAL B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 ARG B 15 REMARK 465 ASN B 16 REMARK 465 ASN B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 ALA B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 SER B 32 REMARK 465 ALA B 33 REMARK 465 ALA B 34 REMARK 465 CYS B 35 REMARK 465 ALA B 36 REMARK 465 SER B 37 REMARK 465 PRO B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 465 THR B 41 REMARK 465 ALA B 42 REMARK 465 ALA B 43 REMARK 465 SER B 44 REMARK 465 GLY B 45 REMARK 465 ALA B 46 REMARK 465 ALA B 47 REMARK 465 ALA B 48 REMARK 465 SER B 49 REMARK 465 SER B 50 REMARK 465 ALA B 51 REMARK 465 SER B 52 REMARK 465 ALA B 53 REMARK 465 ALA B 54 REMARK 465 ALA B 55 REMARK 465 ALA B 56 REMARK 465 SER B 57 REMARK 465 ALA B 58 REMARK 465 ALA B 59 REMARK 465 ALA B 60 REMARK 465 ALA B 61 REMARK 465 PRO B 62 REMARK 465 ASN B 63 REMARK 465 ASN B 64 REMARK 465 GLY B 65 REMARK 465 GLN B 66 REMARK 465 ASN B 67 REMARK 465 LYS B 68 REMARK 465 SER B 69 REMARK 465 LEU B 70 REMARK 465 ALA B 71 REMARK 465 ALA B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 PRO B 75 REMARK 465 ASN B 76 REMARK 465 GLY B 77 REMARK 465 ASN B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 SER B 81 REMARK 465 ASN B 82 REMARK 465 SER B 83 REMARK 465 TRP B 84 REMARK 465 GLU B 85 REMARK 465 GLU B 86 REMARK 465 GLY B 87 REMARK 465 SER B 88 REMARK 465 SER B 89 REMARK 465 GLY B 90 REMARK 465 SER B 91 REMARK 465 SER B 92 REMARK 465 SER B 93 REMARK 465 ASP B 94 REMARK 465 GLU B 95 REMARK 465 GLU B 96 REMARK 465 HIS B 97 REMARK 465 GLY B 98 REMARK 465 GLY B 99 REMARK 465 GLY B 100 REMARK 465 GLY B 101 REMARK 465 MET B 102 REMARK 465 ARG B 103 REMARK 465 VAL B 104 REMARK 465 GLY B 105 REMARK 465 PRO B 106 REMARK 465 GLN B 107 REMARK 465 TYR B 108 REMARK 465 GLN B 109 REMARK 465 ALA B 110 REMARK 465 VAL B 111 REMARK 465 VAL B 112 REMARK 465 PRO B 113 REMARK 465 ASP B 114 REMARK 465 PHE B 115 REMARK 465 ASP B 116 REMARK 465 PRO B 117 REMARK 465 ALA B 118 REMARK 465 LYS B 119 REMARK 465 LEU B 120 REMARK 465 ALA B 121 REMARK 465 ARG B 122 REMARK 465 ARG B 123 REMARK 465 SER B 124 REMARK 465 GLN B 125 REMARK 465 GLU B 126 REMARK 465 ARG B 127 REMARK 465 ASP B 128 REMARK 465 ASN B 129 REMARK 465 LEU B 130 REMARK 465 GLY B 131 REMARK 465 MET B 132 REMARK 465 LEU B 133 REMARK 465 VAL B 134 REMARK 465 TRP B 135 REMARK 465 SER B 136 REMARK 465 PRO B 137 REMARK 465 ASN B 138 REMARK 465 GLN B 139 REMARK 465 ASN B 140 REMARK 465 LEU B 141 REMARK 465 SER B 142 REMARK 465 GLU B 143 REMARK 465 ALA B 144 REMARK 465 LYS B 145 REMARK 465 LEU B 146 REMARK 465 ASP B 147 REMARK 465 GLU B 148 REMARK 465 TYR B 149 REMARK 465 ILE B 150 REMARK 465 ALA B 151 REMARK 465 ILE B 152 REMARK 465 ALA B 153 REMARK 465 LYS B 154 REMARK 465 GLU B 155 REMARK 465 LYS B 156 REMARK 465 HIS B 157 REMARK 465 GLY B 158 REMARK 465 TYR B 159 REMARK 465 ASN B 160 REMARK 465 MET B 161 REMARK 465 GLU B 162 REMARK 465 GLN B 163 REMARK 465 ALA B 164 REMARK 465 LEU B 165 REMARK 465 GLY B 166 REMARK 465 MET B 167 REMARK 465 LEU B 168 REMARK 465 PHE B 169 REMARK 465 TRP B 170 REMARK 465 HIS B 171 REMARK 465 LYS B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 ILE B 175 REMARK 465 GLU B 176 REMARK 465 LYS B 177 REMARK 465 SER B 178 REMARK 465 LEU B 179 REMARK 465 ALA B 180 REMARK 465 ASP B 181 REMARK 465 LEU B 182 REMARK 465 PRO B 183 REMARK 465 ASN B 184 REMARK 465 PHE B 185 REMARK 465 THR B 186 REMARK 465 PRO B 187 REMARK 465 PHE B 188 REMARK 465 PRO B 189 REMARK 465 ASP B 190 REMARK 465 GLU B 191 REMARK 465 TRP B 192 REMARK 465 THR B 193 REMARK 465 VAL B 194 REMARK 465 GLU B 195 REMARK 465 ASP B 196 REMARK 465 LYS B 197 REMARK 465 VAL B 198 REMARK 465 LEU B 199 REMARK 465 PHE B 200 REMARK 465 GLU B 201 REMARK 465 GLN B 202 REMARK 465 ALA B 203 REMARK 465 PHE B 204 REMARK 465 SER B 205 REMARK 465 PHE B 206 REMARK 465 HIS B 207 REMARK 465 GLY B 208 REMARK 465 LYS B 209 REMARK 465 THR B 210 REMARK 465 PHE B 211 REMARK 465 HIS B 212 REMARK 465 ARG B 213 REMARK 465 ILE B 214 REMARK 465 GLN B 215 REMARK 465 GLN B 216 REMARK 465 MET B 217 REMARK 465 LEU B 218 REMARK 465 PRO B 219 REMARK 465 ASP B 220 REMARK 465 LYS B 221 REMARK 465 SER B 222 REMARK 465 ILE B 223 REMARK 465 ALA B 224 REMARK 465 SER B 225 REMARK 465 LEU B 226 REMARK 465 VAL B 227 REMARK 465 LYS B 228 REMARK 465 PHE B 229 REMARK 465 TYR B 230 REMARK 465 TYR B 231 REMARK 465 SER B 232 REMARK 465 TRP B 233 REMARK 465 LYS B 234 REMARK 465 LYS B 235 REMARK 465 THR B 236 REMARK 465 ARG B 237 REMARK 465 THR B 238 REMARK 465 LYS B 239 REMARK 465 THR B 240 REMARK 465 SER B 241 REMARK 465 VAL B 242 REMARK 465 MET B 243 REMARK 465 ASP B 244 REMARK 465 ARG B 245 REMARK 465 HIS B 246 REMARK 465 ALA B 247 REMARK 465 ARG B 248 REMARK 465 LYS B 249 REMARK 465 GLN B 250 REMARK 465 LYS B 251 REMARK 465 ARG B 252 REMARK 465 GLU B 253 REMARK 465 ARG B 254 REMARK 465 GLU B 255 REMARK 465 GLU B 256 REMARK 465 SER B 257 REMARK 465 GLU B 258 REMARK 465 ASP B 259 REMARK 465 GLU B 260 REMARK 465 LEU B 261 REMARK 465 GLU B 262 REMARK 465 GLU B 263 REMARK 465 ALA B 264 REMARK 465 ASN B 265 REMARK 465 GLY B 266 REMARK 465 ASN B 267 REMARK 465 ASN B 268 REMARK 465 PRO B 269 REMARK 465 ILE B 270 REMARK 465 ASP B 271 REMARK 465 ILE B 272 REMARK 465 GLU B 273 REMARK 465 VAL B 274 REMARK 465 ASP B 275 REMARK 465 GLN B 276 REMARK 465 ASN B 277 REMARK 465 LYS B 278 REMARK 465 GLU B 279 REMARK 465 SER B 280 REMARK 465 LYS B 281 REMARK 465 LYS B 282 REMARK 465 GLU B 283 REMARK 465 VAL B 284 REMARK 465 PRO B 285 REMARK 465 PRO B 286 REMARK 465 THR B 287 REMARK 465 GLU B 288 REMARK 465 THR B 289 REMARK 465 VAL B 290 REMARK 465 PRO B 291 REMARK 465 GLN B 292 REMARK 465 VAL B 293 REMARK 465 LYS B 294 REMARK 465 LYS B 295 REMARK 465 GLU B 296 REMARK 465 LYS B 297 REMARK 465 HIS B 298 REMARK 465 SER B 299 REMARK 465 THR B 300 REMARK 465 GLN B 301 REMARK 465 ALA B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 ARG B 305 REMARK 465 ALA B 306 REMARK 465 LYS B 307 REMARK 465 HIS B 441 REMARK 465 GLY B 442 REMARK 465 LYS B 443 REMARK 465 GLU B 444 REMARK 465 GLU B 445 REMARK 465 THR B 446 REMARK 465 ASN B 447 REMARK 465 GLY B 448 REMARK 465 PRO B 449 REMARK 465 SER B 450 REMARK 465 ASN B 451 REMARK 465 GLN B 452 REMARK 465 LYS B 453 REMARK 465 PRO B 454 REMARK 465 VAL B 455 REMARK 465 LYS B 456 REMARK 465 SER B 457 REMARK 465 PRO B 458 REMARK 465 ASP B 459 REMARK 465 ASN B 460 REMARK 465 SER B 461 REMARK 465 ILE B 462 REMARK 465 LYS B 463 REMARK 465 MET B 464 REMARK 465 PRO B 465 REMARK 465 GLU B 466 REMARK 465 GLU B 467 REMARK 465 GLU B 468 REMARK 465 ASP B 469 REMARK 465 GLU B 470 REMARK 465 ALA B 471 REMARK 465 PRO B 472 REMARK 465 VAL B 473 REMARK 465 LEU B 474 REMARK 465 ASP B 475 REMARK 465 VAL B 476 REMARK 465 ARG B 477 REMARK 465 TYR B 478 REMARK 465 ALA B 479 REMARK 465 SER B 480 REMARK 465 ALA B 481 REMARK 465 SER B 482 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 284 OG1 THR A 624 2.06 REMARK 500 OE1 GLU A 308 O3B FAD A 900 2.04 REMARK 500 OG1 THR A 319 OD1 ASP A 328 2.01 REMARK 500 OD1 ASP A 486 OH TYR B 398 2.05 REMARK 500 O GLU A 506 N LEU A 508 2.13 REMARK 500 O ASP A 525 N GLN A 527 2.05 REMARK 500 O ILE A 528 N TRP A 531 2.18 REMARK 500 OD1 ASN A 660 O SER A 749 2.13 REMARK 500 OG SER B 406 O LYS B 412 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 801 CD GLU A 801 OE1 0.079 REMARK 500 GLU A 821 CD GLU A 821 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 543 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP A 774 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU A 815 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 182 36.80 86.57 REMARK 500 GLU A 192 -73.04 -71.12 REMARK 500 ALA A 193 -42.99 -29.79 REMARK 500 LEU A 211 -76.73 -50.13 REMARK 500 LEU A 222 -76.87 -60.65 REMARK 500 ASP A 223 -8.40 -35.43 REMARK 500 ASN A 224 107.09 -171.25 REMARK 500 GLU A 232 -71.89 -57.52 REMARK 500 ALA A 233 -29.94 -36.65 REMARK 500 GLN A 236 -65.85 -22.01 REMARK 500 LEU A 248 -103.60 -60.98 REMARK 500 VAL A 249 -72.40 3.83 REMARK 500 VAL A 252 -72.76 -38.67 REMARK 500 TYR A 255 -76.08 -68.07 REMARK 500 LEU A 256 -78.84 -29.02 REMARK 500 GLU A 257 -33.86 -29.97 REMARK 500 PRO A 272 168.29 -37.17 REMARK 500 PRO A 274 83.01 -14.41 REMARK 500 THR A 275 -59.26 1.79 REMARK 500 VAL A 288 -88.96 -33.35 REMARK 500 SER A 289 -74.34 -12.47 REMARK 500 ALA A 292 -18.75 -35.08 REMARK 500 ARG A 295 -81.79 -57.72 REMARK 500 GLN A 296 -54.69 -25.15 REMARK 500 ARG A 316 21.66 -76.64 REMARK 500 MET A 332 -41.33 -164.35 REMARK 500 PRO A 341 -33.51 -37.37 REMARK 500 LYS A 355 -175.13 -63.65 REMARK 500 GLU A 364 152.34 -35.03 REMARK 500 ALA A 369 136.90 -29.27 REMARK 500 TYR A 391 -49.40 -26.84 REMARK 500 ASN A 403 -44.72 84.45 REMARK 500 GLN A 410 -58.46 -19.46 REMARK 500 LEU A 418 -9.78 -52.72 REMARK 500 LYS A 421 -78.57 -33.87 REMARK 500 LYS A 424 -71.76 -55.26 REMARK 500 ASP A 425 -33.88 -30.16 REMARK 500 LYS A 432 0.71 -42.61 REMARK 500 VAL A 435 -73.34 -45.74 REMARK 500 LYS A 436 -19.25 -37.20 REMARK 500 LYS A 442 -73.21 -35.12 REMARK 500 GLU A 443 -30.37 -35.84 REMARK 500 ASN A 450 9.93 -57.08 REMARK 500 GLU A 453 -85.84 -49.10 REMARK 500 GLN A 460 -76.16 -31.27 REMARK 500 VAL A 468 82.14 -40.06 REMARK 500 PRO A 470 164.10 -48.21 REMARK 500 SER A 482 -72.40 -42.25 REMARK 500 ARG A 485 -80.00 -40.10 REMARK 500 ASP A 486 -21.59 -33.12 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 627 GLY A 628 146.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 747 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 MC2584 IS AN INHIBITOR THAT HAS REACTED COVALENTLY REMARK 600 WITH FAD. THE COVALENT LINKAGE IS BETWEEN THE N5 ATOM OF REMARK 600 FAD AND THE C1B ATOM OF M84. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M84 A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XAJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX REMARK 900 WITH (-)-TRANS-2-PHENYLCYCLOPROPYL-1-AMINE REMARK 900 RELATED ID: 2X0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NEURO-SPECIFIC REMARK 900 SPLICING VARIANT OF HUMAN HISTONE LYSINE REMARK 900 DEMETHYLASE LSD1. REMARK 900 RELATED ID: 2UXX RELATED DB: PDB REMARK 900 HUMAN LSD1 HISTONE DEMETHYLASE-COREST IN REMARK 900 COMPLEX WITH AN FAD-TRANYLCYPROMINE ADDUCT REMARK 900 RELATED ID: 2IW5 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR COREST-DEPENDENT REMARK 900 DEMETHYLATION OF NUCLEOSOMES BY THE HUMAN REMARK 900 LSD1 HISTONE DEMETHYLASE REMARK 900 RELATED ID: 2V1D RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF LSD1-COREST SELECTIVITY REMARK 900 IN HISTONE H3 RECOGNITION REMARK 900 RELATED ID: 2UXN RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF HISTONE DEMETHYLATION BY REMARK 900 LSD1 REVEALED BY SUICIDE INACTIVATION REMARK 900 RELATED ID: 2H94 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND MECHANISM OF HUMAN REMARK 900 LYSINE-SPECIFICDEMETHYLASE-1 REMARK 900 RELATED ID: 2COM RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF THE 33RD REMARK 900 FIBRONECTIN TYPE IIIDOMAIN OF HUMAN TENASCIN-X REMARK 900 RELATED ID: 2XAG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX REMARK 900 WITH PARA-BROMO-(-)-TRANS-2- REMARK 900 PHENYLCYCLOPROPYL-1-AMINE REMARK 900 RELATED ID: 2XAF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX REMARK 900 WITH PARA-BROMO-CIS-2-PHENYLCYCLOPROPYL-1 REMARK 900 -AMINE REMARK 900 RELATED ID: 2XAH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX REMARK 900 WITH (PLUS)-TRANS-2-PHENYLCYCLOPROPYL-1- REMARK 900 AMINE REMARK 900 RELATED ID: 2XAS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LSD1-COREST IN COMPLEX REMARK 900 WITH A TRANYCYPROMINE DERIVATIVE (MC2580, REMARK 900 14E) DBREF 2XAQ A 1 852 UNP O60341 KDM1_HUMAN 1 852 DBREF 2XAQ B 1 482 UNP Q9UKL0 RCOR1_HUMAN 1 482 SEQRES 1 A 852 MET LEU SER GLY LYS LYS ALA ALA ALA ALA ALA ALA ALA SEQRES 2 A 852 ALA ALA ALA ALA ALA THR GLY THR GLU ALA GLY PRO GLY SEQRES 3 A 852 THR ALA GLY GLY SER GLU ASN GLY SER GLU VAL ALA ALA SEQRES 4 A 852 GLN PRO ALA GLY LEU SER GLY PRO ALA GLU VAL GLY PRO SEQRES 5 A 852 GLY ALA VAL GLY GLU ARG THR PRO ARG LYS LYS GLU PRO SEQRES 6 A 852 PRO ARG ALA SER PRO PRO GLY GLY LEU ALA GLU PRO PRO SEQRES 7 A 852 GLY SER ALA GLY PRO GLN ALA GLY PRO THR VAL VAL PRO SEQRES 8 A 852 GLY SER ALA THR PRO MET GLU THR GLY ILE ALA GLU THR SEQRES 9 A 852 PRO GLU GLY ARG ARG THR SER ARG ARG LYS ARG ALA LYS SEQRES 10 A 852 VAL GLU TYR ARG GLU MET ASP GLU SER LEU ALA ASN LEU SEQRES 11 A 852 SER GLU ASP GLU TYR TYR SER GLU GLU GLU ARG ASN ALA SEQRES 12 A 852 LYS ALA GLU LYS GLU LYS LYS LEU PRO PRO PRO PRO PRO SEQRES 13 A 852 GLN ALA PRO PRO GLU GLU GLU ASN GLU SER GLU PRO GLU SEQRES 14 A 852 GLU PRO SER GLY VAL GLU GLY ALA ALA PHE GLN SER ARG SEQRES 15 A 852 LEU PRO HIS ASP ARG MET THR SER GLN GLU ALA ALA CYS SEQRES 16 A 852 PHE PRO ASP ILE ILE SER GLY PRO GLN GLN THR GLN LYS SEQRES 17 A 852 VAL PHE LEU PHE ILE ARG ASN ARG THR LEU GLN LEU TRP SEQRES 18 A 852 LEU ASP ASN PRO LYS ILE GLN LEU THR PHE GLU ALA THR SEQRES 19 A 852 LEU GLN GLN LEU GLU ALA PRO TYR ASN SER ASP THR VAL SEQRES 20 A 852 LEU VAL HIS ARG VAL HIS SER TYR LEU GLU ARG HIS GLY SEQRES 21 A 852 LEU ILE ASN PHE GLY ILE TYR LYS ARG ILE LYS PRO LEU SEQRES 22 A 852 PRO THR LYS LYS THR GLY LYS VAL ILE ILE ILE GLY SER SEQRES 23 A 852 GLY VAL SER GLY LEU ALA ALA ALA ARG GLN LEU GLN SER SEQRES 24 A 852 PHE GLY MET ASP VAL THR LEU LEU GLU ALA ARG ASP ARG SEQRES 25 A 852 VAL GLY GLY ARG VAL ALA THR PHE ARG LYS GLY ASN TYR SEQRES 26 A 852 VAL ALA ASP LEU GLY ALA MET VAL VAL THR GLY LEU GLY SEQRES 27 A 852 GLY ASN PRO MET ALA VAL VAL SER LYS GLN VAL ASN MET SEQRES 28 A 852 GLU LEU ALA LYS ILE LYS GLN LYS CYS PRO LEU TYR GLU SEQRES 29 A 852 ALA ASN GLY GLN ALA VAL PRO LYS GLU LYS ASP GLU MET SEQRES 30 A 852 VAL GLU GLN GLU PHE ASN ARG LEU LEU GLU ALA THR SER SEQRES 31 A 852 TYR LEU SER HIS GLN LEU ASP PHE ASN VAL LEU ASN ASN SEQRES 32 A 852 LYS PRO VAL SER LEU GLY GLN ALA LEU GLU VAL VAL ILE SEQRES 33 A 852 GLN LEU GLN GLU LYS HIS VAL LYS ASP GLU GLN ILE GLU SEQRES 34 A 852 HIS TRP LYS LYS ILE VAL LYS THR GLN GLU GLU LEU LYS SEQRES 35 A 852 GLU LEU LEU ASN LYS MET VAL ASN LEU LYS GLU LYS ILE SEQRES 36 A 852 LYS GLU LEU HIS GLN GLN TYR LYS GLU ALA SER GLU VAL SEQRES 37 A 852 LYS PRO PRO ARG ASP ILE THR ALA GLU PHE LEU VAL LYS SEQRES 38 A 852 SER LYS HIS ARG ASP LEU THR ALA LEU CYS LYS GLU TYR SEQRES 39 A 852 ASP GLU LEU ALA GLU THR GLN GLY LYS LEU GLU GLU LYS SEQRES 40 A 852 LEU GLN GLU LEU GLU ALA ASN PRO PRO SER ASP VAL TYR SEQRES 41 A 852 LEU SER SER ARG ASP ARG GLN ILE LEU ASP TRP HIS PHE SEQRES 42 A 852 ALA ASN LEU GLU PHE ALA ASN ALA THR PRO LEU SER THR SEQRES 43 A 852 LEU SER LEU LYS HIS TRP ASP GLN ASP ASP ASP PHE GLU SEQRES 44 A 852 PHE THR GLY SER HIS LEU THR VAL ARG ASN GLY TYR SER SEQRES 45 A 852 CYS VAL PRO VAL ALA LEU ALA GLU GLY LEU ASP ILE LYS SEQRES 46 A 852 LEU ASN THR ALA VAL ARG GLN VAL ARG TYR THR ALA SER SEQRES 47 A 852 GLY CYS GLU VAL ILE ALA VAL ASN THR ARG SER THR SER SEQRES 48 A 852 GLN THR PHE ILE TYR LYS CYS ASP ALA VAL LEU CYS THR SEQRES 49 A 852 LEU PRO LEU GLY VAL LEU LYS GLN GLN PRO PRO ALA VAL SEQRES 50 A 852 GLN PHE VAL PRO PRO LEU PRO GLU TRP LYS THR SER ALA SEQRES 51 A 852 VAL GLN ARG MET GLY PHE GLY ASN LEU ASN LYS VAL VAL SEQRES 52 A 852 LEU CYS PHE ASP ARG VAL PHE TRP ASP PRO SER VAL ASN SEQRES 53 A 852 LEU PHE GLY HIS VAL GLY SER THR THR ALA SER ARG GLY SEQRES 54 A 852 GLU LEU PHE LEU PHE TRP ASN LEU TYR LYS ALA PRO ILE SEQRES 55 A 852 LEU LEU ALA LEU VAL ALA GLY GLU ALA ALA GLY ILE MET SEQRES 56 A 852 GLU ASN ILE SER ASP ASP VAL ILE VAL GLY ARG CYS LEU SEQRES 57 A 852 ALA ILE LEU LYS GLY ILE PHE GLY SER SER ALA VAL PRO SEQRES 58 A 852 GLN PRO LYS GLU THR VAL VAL SER ARG TRP ARG ALA ASP SEQRES 59 A 852 PRO TRP ALA ARG GLY SER TYR SER TYR VAL ALA ALA GLY SEQRES 60 A 852 SER SER GLY ASN ASP TYR ASP LEU MET ALA GLN PRO ILE SEQRES 61 A 852 THR PRO GLY PRO SER ILE PRO GLY ALA PRO GLN PRO ILE SEQRES 62 A 852 PRO ARG LEU PHE PHE ALA GLY GLU HIS THR ILE ARG ASN SEQRES 63 A 852 TYR PRO ALA THR VAL HIS GLY ALA LEU LEU SER GLY LEU SEQRES 64 A 852 ARG GLU ALA GLY ARG ILE ALA ASP GLN PHE LEU GLY ALA SEQRES 65 A 852 MET TYR THR LEU PRO ARG GLN ALA THR PRO GLY VAL PRO SEQRES 66 A 852 ALA GLN GLN SER PRO SER MET SEQRES 1 B 482 MET VAL GLU LYS GLY PRO GLU VAL SER GLY LYS ARG ARG SEQRES 2 B 482 GLY ARG ASN ASN ALA ALA ALA SER ALA SER ALA ALA ALA SEQRES 3 B 482 ALA SER ALA ALA ALA SER ALA ALA CYS ALA SER PRO ALA SEQRES 4 B 482 ALA THR ALA ALA SER GLY ALA ALA ALA SER SER ALA SER SEQRES 5 B 482 ALA ALA ALA ALA SER ALA ALA ALA ALA PRO ASN ASN GLY SEQRES 6 B 482 GLN ASN LYS SER LEU ALA ALA ALA ALA PRO ASN GLY ASN SEQRES 7 B 482 SER SER SER ASN SER TRP GLU GLU GLY SER SER GLY SER SEQRES 8 B 482 SER SER ASP GLU GLU HIS GLY GLY GLY GLY MET ARG VAL SEQRES 9 B 482 GLY PRO GLN TYR GLN ALA VAL VAL PRO ASP PHE ASP PRO SEQRES 10 B 482 ALA LYS LEU ALA ARG ARG SER GLN GLU ARG ASP ASN LEU SEQRES 11 B 482 GLY MET LEU VAL TRP SER PRO ASN GLN ASN LEU SER GLU SEQRES 12 B 482 ALA LYS LEU ASP GLU TYR ILE ALA ILE ALA LYS GLU LYS SEQRES 13 B 482 HIS GLY TYR ASN MET GLU GLN ALA LEU GLY MET LEU PHE SEQRES 14 B 482 TRP HIS LYS HIS ASN ILE GLU LYS SER LEU ALA ASP LEU SEQRES 15 B 482 PRO ASN PHE THR PRO PHE PRO ASP GLU TRP THR VAL GLU SEQRES 16 B 482 ASP LYS VAL LEU PHE GLU GLN ALA PHE SER PHE HIS GLY SEQRES 17 B 482 LYS THR PHE HIS ARG ILE GLN GLN MET LEU PRO ASP LYS SEQRES 18 B 482 SER ILE ALA SER LEU VAL LYS PHE TYR TYR SER TRP LYS SEQRES 19 B 482 LYS THR ARG THR LYS THR SER VAL MET ASP ARG HIS ALA SEQRES 20 B 482 ARG LYS GLN LYS ARG GLU ARG GLU GLU SER GLU ASP GLU SEQRES 21 B 482 LEU GLU GLU ALA ASN GLY ASN ASN PRO ILE ASP ILE GLU SEQRES 22 B 482 VAL ASP GLN ASN LYS GLU SER LYS LYS GLU VAL PRO PRO SEQRES 23 B 482 THR GLU THR VAL PRO GLN VAL LYS LYS GLU LYS HIS SER SEQRES 24 B 482 THR GLN ALA LYS ASN ARG ALA LYS ARG LYS PRO PRO LYS SEQRES 25 B 482 GLY MET PHE LEU SER GLN GLU ASP VAL GLU ALA VAL SER SEQRES 26 B 482 ALA ASN ALA THR ALA ALA THR THR VAL LEU ARG GLN LEU SEQRES 27 B 482 ASP MET GLU LEU VAL SER VAL LYS ARG GLN ILE GLN ASN SEQRES 28 B 482 ILE LYS GLN THR ASN SER ALA LEU LYS GLU LYS LEU ASP SEQRES 29 B 482 GLY GLY ILE GLU PRO TYR ARG LEU PRO GLU VAL ILE GLN SEQRES 30 B 482 LYS CYS ASN ALA ARG TRP THR THR GLU GLU GLN LEU LEU SEQRES 31 B 482 ALA VAL GLN ALA ILE ARG LYS TYR GLY ARG ASP PHE GLN SEQRES 32 B 482 ALA ILE SER ASP VAL ILE GLY ASN LYS SER VAL VAL GLN SEQRES 33 B 482 VAL LYS ASN PHE PHE VAL ASN TYR ARG ARG ARG PHE ASN SEQRES 34 B 482 ILE ASP GLU VAL LEU GLN GLU TRP GLU ALA GLU HIS GLY SEQRES 35 B 482 LYS GLU GLU THR ASN GLY PRO SER ASN GLN LYS PRO VAL SEQRES 36 B 482 LYS SER PRO ASP ASN SER ILE LYS MET PRO GLU GLU GLU SEQRES 37 B 482 ASP GLU ALA PRO VAL LEU ASP VAL ARG TYR ALA SER ALA SEQRES 38 B 482 SER HET FAD A 900 53 HET M84 A 901 19 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM M84 3-{4-[(PHENYLCARBONYL)AMINO]PHENYL}PROPANOIC HETNAM 2 M84 ACID FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 M84 C16 H15 N O3 HELIX 1 1 GLY A 173 GLN A 180 1 8 HELIX 2 2 THR A 189 ALA A 194 1 6 HELIX 3 3 PHE A 196 GLY A 202 1 7 HELIX 4 4 PRO A 203 ASN A 224 1 22 HELIX 5 5 THR A 230 GLN A 237 1 8 HELIX 6 6 ASP A 245 HIS A 259 1 15 HELIX 7 7 GLY A 287 PHE A 300 1 14 HELIX 8 8 ASN A 340 VAL A 349 1 10 HELIX 9 9 PRO A 371 LEU A 396 1 26 HELIX 10 10 SER A 407 LYS A 432 1 26 HELIX 11 11 ILE A 434 VAL A 468 1 35 HELIX 12 12 ASP A 473 LYS A 507 1 35 HELIX 13 13 LEU A 508 ASN A 514 1 7 HELIX 14 14 ARG A 524 GLN A 527 5 4 HELIX 15 15 ILE A 528 ASN A 540 1 13 HELIX 16 16 SER A 572 ALA A 579 1 8 HELIX 17 17 PRO A 626 GLN A 632 1 7 HELIX 18 18 PRO A 644 MET A 654 1 11 HELIX 19 19 ALA A 711 GLU A 716 1 6 HELIX 20 20 SER A 719 GLY A 736 1 18 HELIX 21 21 GLY A 770 GLN A 778 1 9 HELIX 22 22 THR A 810 GLY A 831 1 22 HELIX 23 23 ALA A 832 LEU A 836 5 5 HELIX 24 24 SER B 317 VAL B 324 1 8 HELIX 25 25 THR B 329 LYS B 362 1 34 HELIX 26 26 ILE B 367 ARG B 371 5 5 HELIX 27 27 THR B 384 GLY B 399 1 16 HELIX 28 28 GLN B 403 GLY B 410 1 8 HELIX 29 29 SER B 413 TYR B 424 1 12 HELIX 30 30 ASN B 429 ALA B 439 1 11 SHEET 1 AA 5 ASP A 583 LYS A 585 0 SHEET 2 AA 5 ASP A 303 LEU A 307 1 O VAL A 304 N ASP A 583 SHEET 3 AA 5 LYS A 280 ILE A 284 1 O VAL A 281 N THR A 305 SHEET 4 AA 5 ALA A 620 CYS A 623 1 O ALA A 620 N ILE A 282 SHEET 5 AA 5 LEU A 796 PHE A 798 1 O PHE A 797 N CYS A 623 SHEET 1 AB 2 PHE A 320 LYS A 322 0 SHEET 2 AB 2 TYR A 325 ALA A 327 -1 O TYR A 325 N LYS A 322 SHEET 1 AC 3 VAL A 333 VAL A 334 0 SHEET 2 AC 3 LEU A 565 VAL A 567 -1 O LEU A 565 N VAL A 334 SHEET 3 AC 3 LEU A 353 LYS A 355 -1 O ALA A 354 N THR A 566 SHEET 1 AD 2 VAL A 400 LEU A 401 0 SHEET 2 AD 2 LYS A 404 PRO A 405 -1 O LYS A 404 N LEU A 401 SHEET 1 AE 4 THR A 613 CYS A 618 0 SHEET 2 AE 4 GLY A 599 ASN A 606 -1 O CYS A 600 N CYS A 618 SHEET 3 AE 4 THR A 588 THR A 596 -1 O ALA A 589 N VAL A 605 SHEET 4 AE 4 GLN A 638 VAL A 640 1 O GLN A 638 N VAL A 593 SHEET 1 AF 5 LEU A 677 PHE A 678 0 SHEET 2 AF 5 PHE A 694 ASN A 696 -1 O PHE A 694 N PHE A 678 SHEET 3 AF 5 ILE A 702 VAL A 707 -1 O LEU A 704 N TRP A 695 SHEET 4 AF 5 ASN A 660 CYS A 665 -1 O ASN A 660 N VAL A 707 SHEET 5 AF 5 GLU A 745 VAL A 748 -1 O GLU A 745 N CYS A 665 LINK N5 FAD A 900 C1B M84 A 901 1555 1555 1.41 CISPEP 1 ALA A 240 PRO A 241 0 4.12 CISPEP 2 PRO A 470 PRO A 471 0 -6.95 CISPEP 3 GLN A 633 PRO A 634 0 8.86 CISPEP 4 VAL A 640 PRO A 641 0 7.62 SITE 1 AC1 31 GLY A 285 SER A 286 GLY A 287 VAL A 288 SITE 2 AC1 31 SER A 289 GLU A 308 ALA A 309 ARG A 310 SITE 3 AC1 31 GLY A 314 GLY A 315 ARG A 316 LEU A 329 SITE 4 AC1 31 GLY A 330 ALA A 331 MET A 332 VAL A 333 SITE 5 AC1 31 THR A 588 ALA A 589 VAL A 590 LEU A 625 SITE 6 AC1 31 PRO A 626 TRP A 751 SER A 760 TYR A 761 SITE 7 AC1 31 GLY A 800 GLU A 801 ALA A 809 THR A 810 SITE 8 AC1 31 VAL A 811 ALA A 814 M84 A 901 SITE 1 AC2 7 THR A 335 ASP A 556 GLU A 559 TYR A 761 SITE 2 AC2 7 ALA A 809 THR A 810 FAD A 900 CRYST1 120.102 180.346 235.928 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004239 0.00000