HEADER ANTIVIRAL PROTEIN,SUGAR BINDING PROTEIN 08-NOV-06 2NU5 TITLE CRYSTAL STRUCTURE OF A COMPLEX OF GRIFFITHSIN COCRYSTALLIZED WITH N- TITLE 2 ACETYLGLUCOSAMINE CAVEAT 2NU5 THR B 3 HAS WRONG CHIRALITY AT ATOM CB NAG A 122 HAS WRONG CAVEAT 2 2NU5 CHIRALITY AT ATOM C1 NAG A 123 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 2NU5 C1 NAG A 124 HAS WRONG CHIRALITY AT ATOM C1 NAG B 122 HAS CAVEAT 4 2NU5 WRONG CHIRALITY AT ATOM C1 NAG B 123 HAS WRONG CHIRALITY AT CAVEAT 5 2NU5 ATOM C1 NAG B 124 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRIFFITHSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GRFT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIFFITHSIA SP.; SOURCE 3 ORGANISM_TAXID: 373036; SOURCE 4 STRAIN: Q66D336; SOURCE 5 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS GRIFFITHSIN; LECTINS; DOMAIN SWAPPING; MANNOSE BINDING; HIV; SARS, KEYWDS 2 ANTIVIRAL PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.E.ZIOLKOWSKA,A.WLODAWER REVDAT 5 29-JUL-20 2NU5 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM LINK SITE REVDAT 4 18-OCT-17 2NU5 1 REMARK REVDAT 3 13-JUL-11 2NU5 1 VERSN REVDAT 2 24-FEB-09 2NU5 1 VERSN REVDAT 1 07-AUG-07 2NU5 0 JRNL AUTH N.E.ZIOLKOWSKA,S.R.SHENOY,B.R.O'KEEFE,A.WLODAWER JRNL TITL CRYSTALLOGRAPHIC STUDIES OF THE COMPLEXES OF ANTIVIRAL JRNL TITL 2 PROTEIN GRIFFITHSIN WITH GLUCOSE AND N-ACETYLGLUCOSAMINE JRNL REF PROTEIN SCI. V. 16 1485 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17567736 JRNL DOI 10.1110/PS.072889407 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 28639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1531 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2020 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2728 ; 1.935 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 7.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;42.907 ;23.820 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;13.778 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;23.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1508 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 874 ; 0.276 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1403 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 282 ; 0.349 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 59 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 1.436 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1917 ; 1.888 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 895 ; 3.383 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 808 ; 4.636 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4503 2.0476 6.3921 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: -0.0141 REMARK 3 T33: 0.0011 T12: -0.0002 REMARK 3 T13: 0.0042 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1362 L22: 0.0366 REMARK 3 L33: 0.4882 L12: -0.0091 REMARK 3 L13: 0.0137 L23: 0.0818 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.0198 S13: -0.0120 REMARK 3 S21: -0.0019 S22: 0.0003 S23: -0.0066 REMARK 3 S31: -0.0335 S32: 0.0085 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0033 -2.0301 -11.8476 REMARK 3 T TENSOR REMARK 3 T11: -0.0080 T22: -0.0132 REMARK 3 T33: 0.0027 T12: -0.0004 REMARK 3 T13: 0.0030 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1037 L22: 0.0967 REMARK 3 L33: 0.2766 L12: 0.0070 REMARK 3 L13: 0.0346 L23: -0.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0118 S13: -0.0061 REMARK 3 S21: -0.0010 S22: 0.0028 S23: 0.0012 REMARK 3 S31: -0.0045 S32: -0.0065 S33: 0.0029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO (HKL-2000) REMARK 200 DATA SCALING SOFTWARE : SCALEPACK (HKL-2000) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.564 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M MAGNESIUM SULFATE, 0.1M MES, 1:10 REMARK 280 RATIO OF GRIFFITHSIN MONOMERS TO N-ACETYLGLUCOSAMINE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.00500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.00500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 9049 O HOH A 9153 2.00 REMARK 500 O HOH B 9144 O HOH B 9145 2.02 REMARK 500 OG SER B 1 O HOH B 9138 2.07 REMARK 500 O HOH A 9049 O HOH A 9113 2.09 REMARK 500 OD2 ASP A 115 O HOH A 9020 2.15 REMARK 500 O HOH B 9132 O HOH B 9144 2.15 REMARK 500 OG SER B 16 O HOH B 9143 2.15 REMARK 500 O HOH A 9049 O HOH A 9152 2.17 REMARK 500 OG SER B 54 O HOH B 9144 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 9106 O HOH B 9068 4445 1.97 REMARK 500 O HOH A 9111 O HOH B 9095 4555 2.05 REMARK 500 O HOH A 9102 O HOH B 9144 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 115 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 THR B 3 OG1 - CB - CG2 ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GTY RELATED DB: PDB REMARK 900 RELATED ID: 2GUX RELATED DB: PDB REMARK 900 RELATED ID: 2GUE RELATED DB: PDB REMARK 900 THE SAME COMPLEX OBTAINED BY SOAKING N-ACETYLGLUCOSAMINE INTO A REMARK 900 PROTEIN CRYSTAL REMARK 900 RELATED ID: 2GUC RELATED DB: PDB REMARK 900 RELATED ID: 2GUD RELATED DB: PDB REMARK 900 RELATED ID: 2HYR RELATED DB: PDB REMARK 900 RELATED ID: 2NUO RELATED DB: PDB DBREF 2NU5 A 1 121 UNP P84801 GRFIN_GRISQ 1 121 DBREF 2NU5 B 1 121 UNP P84801 GRFIN_GRISQ 1 121 SEQADV 2NU5 ACE A 0 UNP P84801 ACETYLATION SEQADV 2NU5 ACE B 0 UNP P84801 ACETYLATION SEQRES 1 A 122 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 A 122 SER PRO PHE SER GLY LEU SER SER ILE ALA VAL ARG SER SEQRES 3 A 122 GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL HIS SEQRES 4 A 122 HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE THR SEQRES 5 A 122 PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE ARG SEQRES 6 A 122 SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR ASN SEQRES 7 A 122 MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY GLY SEQRES 8 A 122 SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN ILE SEQRES 9 A 122 ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP ILE SEQRES 10 A 122 TYR TYR GLU GLN TYR SEQRES 1 B 122 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 B 122 SER PRO PHE SER GLY LEU SER SER ILE ALA VAL ARG SER SEQRES 3 B 122 GLY SER TYR LEU ASP ALA ILE ILE ILE ASP GLY VAL HIS SEQRES 4 B 122 HIS GLY GLY SER GLY GLY ASN LEU SER PRO THR PHE THR SEQRES 5 B 122 PHE GLY SER GLY GLU TYR ILE SER ASN MET THR ILE ARG SEQRES 6 B 122 SER GLY ASP TYR ILE ASP ASN ILE SER PHE GLU THR ASN SEQRES 7 B 122 MET GLY ARG ARG PHE GLY PRO TYR GLY GLY SER GLY GLY SEQRES 8 B 122 SER ALA ASN THR LEU SER ASN VAL LYS VAL ILE GLN ILE SEQRES 9 B 122 ASN GLY SER ALA GLY ASP TYR LEU ASP SER LEU ASP ILE SEQRES 10 B 122 TYR TYR GLU GLN TYR HET ACE A 0 3 HET ACE B 0 3 HET NAG A 122 30 HET NAG A 123 30 HET NAG A 124 30 HET SO4 A9001 5 HET NAG B 122 30 HET NAG B 123 30 HET NAG B 124 30 HET SO4 B9002 5 HET SO4 B9003 5 HETNAM ACE ACETYL GROUP HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 6 SO4 3(O4 S 2-) FORMUL 12 HOH *327(H2 O) SHEET 1 A 4 LEU A 2 GLY A 8 0 SHEET 2 A 4 LEU B 111 GLN B 120 -1 O ILE B 116 N ARG A 5 SHEET 3 A 4 VAL B 98 ALA B 107 -1 N ILE B 101 O TYR B 117 SHEET 4 A 4 SER A 13 PHE A 15 -1 N PHE A 15 O GLY B 105 SHEET 1 B 4 VAL A 37 GLY A 40 0 SHEET 2 B 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 B 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 B 4 ASN A 45 LEU A 46 -1 O ASN A 45 N SER A 25 SHEET 1 C 4 VAL A 37 GLY A 40 0 SHEET 2 C 4 LEU A 29 ILE A 34 -1 N ILE A 32 O HIS A 39 SHEET 3 C 4 SER A 20 SER A 25 -1 N ALA A 22 O ILE A 33 SHEET 4 C 4 PHE A 50 THR A 51 -1 O PHE A 50 N ILE A 21 SHEET 1 D 4 ARG A 81 GLY A 86 0 SHEET 2 D 4 ILE A 69 THR A 76 -1 N PHE A 74 O PHE A 82 SHEET 3 D 4 ILE A 58 SER A 65 -1 N ASN A 60 O GLU A 75 SHEET 4 D 4 SER A 91 SER A 96 -1 O ASN A 93 N ILE A 63 SHEET 1 E 4 SER B 1 GLY B 8 0 SHEET 2 E 4 LEU A 111 GLN A 120 -1 N TYR A 118 O THR B 3 SHEET 3 E 4 VAL A 98 ALA A 107 -1 N ILE A 101 O TYR A 117 SHEET 4 E 4 SER B 13 PHE B 15 -1 O SER B 13 N ALA A 107 SHEET 1 F 4 VAL B 37 GLY B 40 0 SHEET 2 F 4 LEU B 29 ILE B 34 -1 N ILE B 32 O HIS B 39 SHEET 3 F 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 F 4 ASN B 45 LEU B 46 -1 O ASN B 45 N SER B 25 SHEET 1 G 4 VAL B 37 GLY B 40 0 SHEET 2 G 4 LEU B 29 ILE B 34 -1 N ILE B 32 O HIS B 39 SHEET 3 G 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 G 4 PHE B 50 THR B 51 -1 O PHE B 50 N ILE B 21 SHEET 1 H 4 ARG B 81 GLY B 86 0 SHEET 2 H 4 ILE B 69 THR B 76 -1 N PHE B 74 O PHE B 82 SHEET 3 H 4 ILE B 58 SER B 65 -1 N THR B 62 O SER B 73 SHEET 4 H 4 SER B 91 SER B 96 -1 O ASN B 93 N ILE B 63 LINK C ACE A 0 N SER A 1 1555 1555 1.32 LINK C ACE B 0 N SER B 1 1555 1555 1.31 CISPEP 1 GLY A 83 PRO A 84 0 8.41 CISPEP 2 GLY B 83 PRO B 84 0 6.68 CRYST1 37.570 53.410 104.010 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009614 0.00000