HEADER PROTEIN TRANSPORT 01-JAN-12 2LNM TITLE SOLUTION STRUCTURE OF THE C-TERMINAL NP-REPEAT DOMAIN OF TIC40, A CO- TITLE 2 CHAPERONE DURING PROTEIN IMPORT INTO CHLOROPLASTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TIC 40, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 386-447; COMPND 5 SYNONYM: PROTEIN PIGMENT DEFECTIVE EMBRYO 120, TRANSLOCON AT THE COMPND 6 INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 40, ATTIC40; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TIC40, PDE120, AT5G16620, MTG13.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 11 OTHER_DETAILS: NDEI, XHOI KEYWDS TRANSLOCON, IMPORT, CHLOROPLAST, TIC40-NP, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHEN,Y.KAO REVDAT 2 14-JUN-23 2LNM 1 REMARK REVDAT 1 14-NOV-12 2LNM 0 JRNL AUTH Y.F.KAO,Y.C.LOU,Y.H.YEH,C.D.HSIAO,C.CHEN JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL NP-REPEAT DOMAIN OF JRNL TITL 2 TIC40, A CO-CHAPERONE DURING PROTEIN IMPORT INTO JRNL TITL 3 CHLOROPLASTS. JRNL REF J.BIOCHEM. V. 152 443 2012 JRNL REFN ISSN 0021-924X JRNL PMID 22888115 JRNL DOI 10.1093/JB/MVS086 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.18, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102604. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.56 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE-1, 20 REMARK 210 MM SODIUM CITRATE-2, 100 MM REMARK 210 SODIUM CHLORIDE-3, 10 % [U-99% REMARK 210 2H] TFE-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D CCCONH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN A 33 HD22 ASN A 36 1.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 9 -6.98 -59.30 REMARK 500 1 PRO A 12 -15.29 -45.20 REMARK 500 1 ASN A 33 151.33 170.80 REMARK 500 1 PRO A 34 -7.91 -45.83 REMARK 500 1 MET A 38 -9.21 -59.51 REMARK 500 1 MET A 60 98.03 53.29 REMARK 500 2 PRO A 12 -15.42 -45.76 REMARK 500 2 ASN A 33 161.22 171.11 REMARK 500 2 PRO A 34 -10.07 -45.94 REMARK 500 2 MET A 60 -61.61 -168.61 REMARK 500 3 MET A 9 -7.04 -57.22 REMARK 500 3 PRO A 12 -13.06 -45.82 REMARK 500 3 ASN A 33 152.21 170.96 REMARK 500 3 PRO A 34 -8.22 -47.64 REMARK 500 3 PHE A 57 88.42 -154.24 REMARK 500 3 PRO A 58 52.67 -92.74 REMARK 500 3 MET A 60 -83.24 -134.98 REMARK 500 4 PRO A 12 -12.53 -45.94 REMARK 500 4 ASN A 33 157.86 174.13 REMARK 500 4 PRO A 34 -9.74 -45.54 REMARK 500 4 MET A 38 24.76 -72.11 REMARK 500 4 LYS A 39 -38.43 -146.46 REMARK 500 4 MET A 60 96.54 52.75 REMARK 500 5 MET A 9 -7.16 -58.06 REMARK 500 5 PRO A 12 -15.42 -44.53 REMARK 500 5 ASN A 33 164.08 175.57 REMARK 500 5 PRO A 34 -9.94 -45.69 REMARK 500 5 MET A 38 21.40 -65.23 REMARK 500 5 LYS A 39 -34.10 -154.25 REMARK 500 5 PRO A 58 10.30 -63.69 REMARK 500 5 THR A 61 76.13 52.44 REMARK 500 6 MET A 9 -6.80 -57.43 REMARK 500 6 PRO A 12 -13.44 -45.99 REMARK 500 6 ASN A 33 156.41 172.01 REMARK 500 6 PRO A 34 -9.40 -45.85 REMARK 500 6 PRO A 58 -78.00 -63.08 REMARK 500 6 MET A 60 96.93 53.85 REMARK 500 6 THR A 61 -160.28 -65.14 REMARK 500 7 MET A 9 -7.30 -57.14 REMARK 500 7 PRO A 12 -12.91 -46.19 REMARK 500 7 ASN A 33 157.58 174.89 REMARK 500 7 PRO A 34 -8.54 -48.63 REMARK 500 7 PRO A 58 90.25 -42.14 REMARK 500 7 MET A 60 114.80 -175.60 REMARK 500 8 MET A 9 -6.95 -58.53 REMARK 500 8 ASN A 11 90.70 -160.34 REMARK 500 8 PRO A 12 -14.22 -45.37 REMARK 500 8 ASN A 33 158.04 173.75 REMARK 500 8 PRO A 34 -9.54 -45.66 REMARK 500 8 MET A 60 94.34 50.80 REMARK 500 REMARK 500 THIS ENTRY HAS 131 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18171 RELATED DB: BMRB DBREF 2LNM A 1 62 UNP Q9FMD5 TIC40_ARATH 386 447 SEQRES 1 A 62 PRO GLU GLU VAL ILE SER LYS ILE MET GLU ASN PRO ASP SEQRES 2 A 62 VAL ALA MET ALA PHE GLN ASN PRO ARG VAL GLN ALA ALA SEQRES 3 A 62 LEU MET GLU CYS SER GLU ASN PRO MET ASN ILE MET LYS SEQRES 4 A 62 TYR GLN ASN ASP LYS GLU VAL MET ASP VAL PHE ASN LYS SEQRES 5 A 62 ILE SER GLN LEU PHE PRO GLY MET THR GLY HELIX 1 1 PRO A 1 MET A 9 1 9 HELIX 2 2 ASN A 11 PHE A 18 1 8 HELIX 3 3 ASN A 20 SER A 31 1 12 HELIX 4 4 GLU A 32 MET A 35 5 4 HELIX 5 5 ASN A 36 GLN A 41 1 6 HELIX 6 6 ASP A 43 PHE A 57 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20