HEADER OXIDOREDUCTASE 21-DEC-06 2JCD TITLE STRUCTURE OF THE N-OXYGENASE AURF FROM STREPTOMYCES THIOLUTEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: N-OXYGENASE AURF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES THIOLUTEUS; SOURCE 3 ORGANISM_TAXID: 66431; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PMAL-C2X; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2X/AURF KEYWDS OXIDATION OF P-BENZOIC ACID, OXIDOREDUCTASE, N-OXYGENASE, DI- KEYWDS 2 MANGANESE MONO-OXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.ZOCHER,R.WINKLER,C.HERTWECK,G.E.SCHULZ REVDAT 4 28-JUN-17 2JCD 1 REMARK REVDAT 3 24-FEB-09 2JCD 1 VERSN REVDAT 2 25-SEP-07 2JCD 1 JRNL REVDAT 1 11-SEP-07 2JCD 0 JRNL AUTH G.E.ZOCHER,R.WINKLER,C.HERTWECK,G.E.SCHULZ JRNL TITL STRUCTURE AND ACTION OF THE N-OXYGENASE AURF FROM JRNL TITL 2 STREPTOMYCES THIOLUTEUS. JRNL REF J.MOL.BIOL. V. 373 65 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17765264 JRNL DOI 10.1016/J.JMB.2007.06.014 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 50255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.72000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5276 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7181 ; 1.417 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 663 ; 5.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.590 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 897 ;16.199 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 67 ;16.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 808 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4065 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2853 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3695 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 464 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3364 ; 1.023 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5243 ; 1.618 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2199 ; 2.281 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1936 ; 3.559 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90806 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, PHASER, ARP/WARP, REFMAC, COOT REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.11100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.90050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.71900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.90050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.11100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.71900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -8 REMARK 465 SER A -7 REMARK 465 GLU A -6 REMARK 465 PHE A -5 REMARK 465 ASP A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 GLU A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 PRO A 6 REMARK 465 PHE A 322 REMARK 465 ASP A 323 REMARK 465 PHE A 324 REMARK 465 PRO A 325 REMARK 465 GLU A 326 REMARK 465 ARG A 327 REMARK 465 PRO A 328 REMARK 465 ASP A 329 REMARK 465 TRP A 330 REMARK 465 SER A 331 REMARK 465 PRO A 332 REMARK 465 HIS A 333 REMARK 465 THR A 334 REMARK 465 PRO A 335 REMARK 465 ARG A 336 REMARK 465 ILE B -8 REMARK 465 SER B -7 REMARK 465 GLU B -6 REMARK 465 PHE B -5 REMARK 465 ASP B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 GLU B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 320 REMARK 465 ASP B 321 REMARK 465 PHE B 322 REMARK 465 ASP B 323 REMARK 465 PHE B 324 REMARK 465 PRO B 325 REMARK 465 GLU B 326 REMARK 465 ARG B 327 REMARK 465 PRO B 328 REMARK 465 ASP B 329 REMARK 465 TRP B 330 REMARK 465 SER B 331 REMARK 465 PRO B 332 REMARK 465 HIS B 333 REMARK 465 THR B 334 REMARK 465 PRO B 335 REMARK 465 ARG B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU A 48 CA ASP A 49 1.71 REMARK 500 CA LEU A 48 N ASP A 49 1.76 REMARK 500 O LEU A 48 N ASP A 49 1.79 REMARK 500 O HOH A 2205 O HOH A 2260 2.10 REMARK 500 OG SER A 293 O HOH A 2251 2.11 REMARK 500 O HOH A 2057 O HOH A 2123 2.16 REMARK 500 O HOH B 2012 O HOH B 2166 2.18 REMARK 500 OG1 THR A 10 O HOH A 2004 2.18 REMARK 500 O HOH B 2116 O HOH B 2120 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 48 C ASP A 49 N -0.654 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 48 CA - C - N ANGL. DEV. = -20.2 DEGREES REMARK 500 LEU A 48 O - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP A 49 C - N - CA ANGL. DEV. = -22.0 DEGREES REMARK 500 ASP A 49 CA - C - N ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP A 49 O - C - N ANGL. DEV. = -26.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 44 31.77 -140.10 REMARK 500 ASP A 49 -66.84 -90.86 REMARK 500 GLU A 50 147.68 -19.89 REMARK 500 TRP A 51 -86.11 -97.14 REMARK 500 ALA A 52 129.69 -178.63 REMARK 500 ASP A 53 44.04 -79.99 REMARK 500 ASP B 46 8.28 -69.53 REMARK 500 ASP B 46 31.99 -82.95 REMARK 500 GLN B 213 124.52 -38.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 52 ASP A 53 146.71 REMARK 500 GLY B 22 ILE B 23 125.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 48 13.35 REMARK 500 ASP A 49 16.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1322 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE2 REMARK 620 2 GLU A 101 OE1 155.5 REMARK 620 3 HIS A 223 NE2 92.4 84.4 REMARK 620 4 HIS A 139 ND1 90.4 113.3 83.9 REMARK 620 5 GLU A 136 OE2 90.8 96.2 170.8 87.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1323 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 57.5 REMARK 620 3 HIS A 230 ND1 88.4 79.6 REMARK 620 4 HOH A2268 O 88.4 76.7 153.7 REMARK 620 5 GLU A 196 OE1 102.3 158.8 94.9 111.3 REMARK 620 6 GLU A 136 OE1 165.5 108.2 90.9 85.8 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1320 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 223 NE2 REMARK 620 2 GLU B 101 OE1 89.9 REMARK 620 3 GLU B 136 OE2 170.6 94.2 REMARK 620 4 GLU B 227 OE2 94.2 157.2 85.3 REMARK 620 5 HIS B 139 ND1 83.5 112.3 87.2 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1321 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 136 OE1 REMARK 620 2 GLU B 196 OE1 98.2 REMARK 620 3 GLU B 227 OE1 161.7 100.0 REMARK 620 4 GLU B 227 OE2 104.5 156.1 57.8 REMARK 620 5 HOH B2163 O 88.9 120.9 80.1 67.5 REMARK 620 6 HIS B 230 ND1 91.4 92.0 89.9 80.3 146.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1323 DBREF 2JCD A -8 0 PDB 2JCD 2JCD -8 0 DBREF 2JCD A 1 336 UNP Q70KH9 Q70KH9_9ACTO 1 336 DBREF 2JCD B -8 0 PDB 2JCD 2JCD -8 0 DBREF 2JCD B 1 336 UNP Q70KH9 Q70KH9_9ACTO 1 336 SEQRES 1 A 345 ILE SER GLU PHE ASP SER GLY GLU THR MET ARG GLU GLU SEQRES 2 A 345 GLN PRO HIS LEU ALA THR THR TRP ALA ALA ARG GLY TRP SEQRES 3 A 345 VAL GLU GLU GLU GLY ILE GLY SER ALA THR LEU GLY ARG SEQRES 4 A 345 LEU VAL ARG ALA TRP PRO ARG ARG ALA ALA VAL VAL ASN SEQRES 5 A 345 LYS ALA ASP ILE LEU ASP GLU TRP ALA ASP TYR ASP THR SEQRES 6 A 345 LEU VAL PRO ASP TYR PRO LEU GLU ILE VAL PRO PHE ALA SEQRES 7 A 345 GLU HIS PRO LEU PHE LEU ALA ALA GLU PRO HIS GLN ARG SEQRES 8 A 345 GLN ARG VAL LEU THR GLY MET TRP ILE GLY TYR ASN GLU SEQRES 9 A 345 ARG VAL ILE ALA THR GLU GLN LEU ILE ALA GLU PRO ALA SEQRES 10 A 345 PHE ASP LEU VAL MET HIS GLY VAL PHE PRO GLY SER ASP SEQRES 11 A 345 ASP PRO LEU ILE ARG LYS SER VAL GLN GLN ALA ILE VAL SEQRES 12 A 345 ASP GLU SER PHE HIS THR TYR MET HIS MET LEU ALA ILE SEQRES 13 A 345 ASP ARG THR ARG GLU LEU ARG LYS ILE SER GLU ARG PRO SEQRES 14 A 345 PRO GLN PRO GLU LEU VAL THR TYR ARG ARG LEU ARG ARG SEQRES 15 A 345 VAL LEU ALA ASP MET PRO GLU GLN TRP GLU ARG ASP ILE SEQRES 16 A 345 ALA VAL LEU VAL TRP GLY ALA VAL ALA GLU THR CYS ILE SEQRES 17 A 345 ASN ALA LEU LEU ALA LEU LEU ALA ARG ASP ALA THR ILE SEQRES 18 A 345 GLN PRO MET HIS SER LEU ILE THR THR LEU HIS LEU ARG SEQRES 19 A 345 ASP GLU THR ALA HIS GLY SER ILE VAL VAL GLU VAL VAL SEQRES 20 A 345 ARG GLU LEU TYR ALA ARG MET ASN GLU GLN GLN ARG ARG SEQRES 21 A 345 ALA LEU VAL ARG CYS LEU PRO ILE ALA LEU GLU ALA PHE SEQRES 22 A 345 ALA GLU GLN ASP LEU SER ALA LEU LEU LEU GLU LEU ASN SEQRES 23 A 345 ALA ALA GLY ILE ARG GLY ALA GLU GLU ILE VAL GLY ASP SEQRES 24 A 345 LEU ARG SER THR ALA GLY GLY THR ARG LEU VAL ARG ASP SEQRES 25 A 345 PHE SER GLY ALA ARG LYS MET VAL GLU GLN LEU GLY LEU SEQRES 26 A 345 ASP ASP ALA VAL ASP PHE ASP PHE PRO GLU ARG PRO ASP SEQRES 27 A 345 TRP SER PRO HIS THR PRO ARG SEQRES 1 B 345 ILE SER GLU PHE ASP SER GLY GLU THR MET ARG GLU GLU SEQRES 2 B 345 GLN PRO HIS LEU ALA THR THR TRP ALA ALA ARG GLY TRP SEQRES 3 B 345 VAL GLU GLU GLU GLY ILE GLY SER ALA THR LEU GLY ARG SEQRES 4 B 345 LEU VAL ARG ALA TRP PRO ARG ARG ALA ALA VAL VAL ASN SEQRES 5 B 345 LYS ALA ASP ILE LEU ASP GLU TRP ALA ASP TYR ASP THR SEQRES 6 B 345 LEU VAL PRO ASP TYR PRO LEU GLU ILE VAL PRO PHE ALA SEQRES 7 B 345 GLU HIS PRO LEU PHE LEU ALA ALA GLU PRO HIS GLN ARG SEQRES 8 B 345 GLN ARG VAL LEU THR GLY MET TRP ILE GLY TYR ASN GLU SEQRES 9 B 345 ARG VAL ILE ALA THR GLU GLN LEU ILE ALA GLU PRO ALA SEQRES 10 B 345 PHE ASP LEU VAL MET HIS GLY VAL PHE PRO GLY SER ASP SEQRES 11 B 345 ASP PRO LEU ILE ARG LYS SER VAL GLN GLN ALA ILE VAL SEQRES 12 B 345 ASP GLU SER PHE HIS THR TYR MET HIS MET LEU ALA ILE SEQRES 13 B 345 ASP ARG THR ARG GLU LEU ARG LYS ILE SER GLU ARG PRO SEQRES 14 B 345 PRO GLN PRO GLU LEU VAL THR TYR ARG ARG LEU ARG ARG SEQRES 15 B 345 VAL LEU ALA ASP MET PRO GLU GLN TRP GLU ARG ASP ILE SEQRES 16 B 345 ALA VAL LEU VAL TRP GLY ALA VAL ALA GLU THR CYS ILE SEQRES 17 B 345 ASN ALA LEU LEU ALA LEU LEU ALA ARG ASP ALA THR ILE SEQRES 18 B 345 GLN PRO MET HIS SER LEU ILE THR THR LEU HIS LEU ARG SEQRES 19 B 345 ASP GLU THR ALA HIS GLY SER ILE VAL VAL GLU VAL VAL SEQRES 20 B 345 ARG GLU LEU TYR ALA ARG MET ASN GLU GLN GLN ARG ARG SEQRES 21 B 345 ALA LEU VAL ARG CYS LEU PRO ILE ALA LEU GLU ALA PHE SEQRES 22 B 345 ALA GLU GLN ASP LEU SER ALA LEU LEU LEU GLU LEU ASN SEQRES 23 B 345 ALA ALA GLY ILE ARG GLY ALA GLU GLU ILE VAL GLY ASP SEQRES 24 B 345 LEU ARG SER THR ALA GLY GLY THR ARG LEU VAL ARG ASP SEQRES 25 B 345 PHE SER GLY ALA ARG LYS MET VAL GLU GLN LEU GLY LEU SEQRES 26 B 345 ASP ASP ALA VAL ASP PHE ASP PHE PRO GLU ARG PRO ASP SEQRES 27 B 345 TRP SER PRO HIS THR PRO ARG HET MN A1322 1 HET MN A1323 1 HET EDO A1328 4 HET EDO A1329 4 HET EDO A1330 4 HET EDO A1331 4 HET EDO A1332 4 HET MN B1320 1 HET MN B1321 1 HET EDO B1322 4 HET EDO B1323 4 HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 4(MN 2+) FORMUL 5 EDO 7(C2 H6 O2) FORMUL 14 HOH *437(H2 O) HELIX 1 1 SER A 25 LYS A 44 1 20 HELIX 2 2 PRO A 62 VAL A 66 5 5 HELIX 3 3 HIS A 71 ALA A 76 1 6 HELIX 4 4 GLU A 78 ILE A 104 1 27 HELIX 5 5 ILE A 104 HIS A 114 1 11 HELIX 6 6 ASP A 122 ARG A 154 1 33 HELIX 7 7 LEU A 165 ASP A 177 1 13 HELIX 8 8 GLU A 180 ARG A 208 1 29 HELIX 9 9 GLN A 213 MET A 245 1 33 HELIX 10 10 ASN A 246 GLU A 266 1 21 HELIX 11 11 ASP A 268 ALA A 279 1 12 HELIX 12 12 GLY A 283 SER A 293 1 11 HELIX 13 13 PHE A 304 LEU A 314 1 11 HELIX 14 14 SER B 25 ALA B 34 1 10 HELIX 15 15 ALA B 34 ALA B 39 1 6 HELIX 16 16 ALA B 39 LYS B 44 1 6 HELIX 17 17 PRO B 62 VAL B 66 5 5 HELIX 18 18 HIS B 71 ALA B 77 1 7 HELIX 19 19 GLU B 78 ILE B 104 1 27 HELIX 20 20 ILE B 104 HIS B 114 1 11 HELIX 21 21 ASP B 122 ARG B 154 1 33 HELIX 22 22 LEU B 165 ASP B 177 1 13 HELIX 23 23 GLU B 180 ARG B 208 1 29 HELIX 24 24 GLN B 213 MET B 245 1 33 HELIX 25 25 ASN B 246 GLU B 266 1 21 HELIX 26 26 ASP B 268 ALA B 279 1 12 HELIX 27 27 GLY B 283 SER B 293 1 11 HELIX 28 28 PHE B 304 LEU B 314 1 11 LINK MN MN A1322 OE2 GLU A 227 1555 1555 2.11 LINK MN MN A1322 OE1 GLU A 101 1555 1555 2.07 LINK MN MN A1322 NE2 HIS A 223 1555 1555 2.31 LINK MN MN A1322 ND1 HIS A 139 1555 1555 2.20 LINK MN MN A1322 OE2 GLU A 136 1555 1555 2.12 LINK MN MN A1323 OE1 GLU A 227 1555 1555 2.12 LINK MN MN A1323 OE2 GLU A 227 1555 1555 2.50 LINK MN MN A1323 ND1 HIS A 230 1555 1555 2.10 LINK MN MN A1323 O HOH A2268 1555 1555 1.75 LINK MN MN A1323 OE1 GLU A 196 1555 1555 2.01 LINK MN MN A1323 OE1 GLU A 136 1555 1555 2.08 LINK MN MN B1320 NE2 HIS B 223 1555 1555 2.23 LINK MN MN B1320 OE1 GLU B 101 1555 1555 1.98 LINK MN MN B1320 OE2 GLU B 136 1555 1555 2.11 LINK MN MN B1320 OE2 GLU B 227 1555 1555 2.08 LINK MN MN B1320 ND1 HIS B 139 1555 1555 2.30 LINK MN MN B1321 OE1 GLU B 136 1555 1555 2.16 LINK MN MN B1321 OE1 GLU B 196 1555 1555 2.10 LINK MN MN B1321 OE1 GLU B 227 1555 1555 2.03 LINK MN MN B1321 OE2 GLU B 227 1555 1555 2.45 LINK MN MN B1321 O HOH B2163 1555 1555 2.52 LINK MN MN B1321 ND1 HIS B 230 1555 1555 2.24 SITE 1 AC1 8 GLU A 101 GLU A 136 HIS A 139 HIS A 223 SITE 2 AC1 8 GLU A 227 MN A1323 HOH A2267 HOH A2268 SITE 1 AC2 6 GLU A 136 GLU A 196 GLU A 227 HIS A 230 SITE 2 AC2 6 MN A1322 HOH A2268 SITE 1 AC3 6 SER A 25 ALA A 26 LYS A 44 ILE A 47 SITE 2 AC3 6 HOH A2269 HOH A2270 SITE 1 AC4 3 THR A 56 ARG A 251 ARG A 255 SITE 1 AC5 7 TYR A 54 ASP A 60 ARG A 149 THR A 150 SITE 2 AC5 7 LEU A 153 ARG A 154 HIS A 216 SITE 1 AC6 6 ARG A 96 PRO A 163 LEU A 165 HOH A2095 SITE 2 AC6 6 HOH A2271 ALA B 14 SITE 1 AC7 2 PRO A 118 ARG A 244 SITE 1 AC8 7 GLU B 101 GLU B 136 HIS B 139 HIS B 223 SITE 2 AC8 7 GLU B 227 MN B1321 HOH B2163 SITE 1 AC9 6 GLU B 136 GLU B 196 GLU B 227 HIS B 230 SITE 2 AC9 6 MN B1320 HOH B2163 SITE 1 BC1 6 ALA A 14 PRO B 163 LEU B 165 HOH B2150 SITE 2 BC1 6 HOH B2164 HOH B2165 SITE 1 BC2 4 MET A 144 TRP B 12 ARG B 126 HOH B2010 CRYST1 62.222 115.438 125.801 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007949 0.00000 MTRIX1 1 -0.290222 -0.044259 0.955935 21.96590 1 MTRIX2 1 -0.057699 -0.996303 -0.063645 81.79200 1 MTRIX3 1 0.955218 -0.073628 0.286595 -11.60580 1