HEADER TRANSFERASE 01-MAY-06 2GUP TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A ROK FAMILY PROTEIN TITLE 2 FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH SUCROSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROK FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS SUGAR KINASE, ROK FAMILY, STREPTOCOCCUS PNEUMONIAE TIGR4, APC80695, KEYWDS 2 SUCROSE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,H.LI,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 5 20-NOV-24 2GUP 1 HETSYN REVDAT 4 29-JUL-20 2GUP 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 13-JUL-11 2GUP 1 VERSN REVDAT 2 24-FEB-09 2GUP 1 VERSN REVDAT 1 30-MAY-06 2GUP 0 JRNL AUTH K.TAN,H.LI,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A ROK FAMILY PROTEIN FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH SUCROSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 21779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2211 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2336 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3187 ; 2.288 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;38.377 ;25.481 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;16.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;27.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1732 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 974 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1603 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 1.713 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 2.528 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1009 ; 4.198 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 905 ; 5.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 19.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG-8000, 0.1M MGCL2, 0.1M REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.83850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.83850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.33250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.33250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.83850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.33250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.83850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.33900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.33250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IT IS A DIMER, WHICH CAN BE FORMED FROM THE TWO MONOMERS REMARK 300 WITH THE SYMMETRY OPERATIONS OF (X,Y,Z) AND (-X,Y,1/2-Z). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.83850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 14 CB LYS A 14 CG 0.164 REMARK 500 VAL A 69 CB VAL A 69 CG1 0.141 REMARK 500 TRP A 84 CB TRP A 84 CG 0.112 REMARK 500 VAL A 122 CB VAL A 122 CG1 0.136 REMARK 500 GLU A 178 CG GLU A 178 CD 0.093 REMARK 500 TYR A 269 CD1 TYR A 269 CE1 0.135 REMARK 500 TYR A 276 CD1 TYR A 276 CE1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 97 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 LEU A 97 CB - CG - CD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU A 110 CB - CG - CD2 ANGL. DEV. = -13.9 DEGREES REMARK 500 LEU A 137 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 76 77.97 -119.21 REMARK 500 GLU A 116 -63.52 -106.86 REMARK 500 ASN A 134 57.26 32.75 REMARK 500 ALA A 157 -124.68 -146.46 REMARK 500 ASN A 198 107.87 -57.71 REMARK 500 THR A 259 -73.70 -111.52 REMARK 500 HIS A 270 -64.51 -146.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80695 RELATED DB: TARGETDB DBREF 2GUP A 1 289 GB 14973654 AAK76199 1 289 SEQADV 2GUP SER A -2 GB 14973654 CLONING ARTIFACT SEQADV 2GUP ASN A -1 GB 14973654 CLONING ARTIFACT SEQADV 2GUP ALA A 0 GB 14973654 CLONING ARTIFACT SEQADV 2GUP MSE A 1 GB 14973654 MET 1 MODIFIED RESIDUE SEQADV 2GUP MSE A 57 GB 14973654 MET 57 MODIFIED RESIDUE SEQADV 2GUP MSE A 131 GB 14973654 MET 131 MODIFIED RESIDUE SEQADV 2GUP MSE A 151 GB 14973654 MET 151 MODIFIED RESIDUE SEQADV 2GUP MSE A 172 GB 14973654 MET 172 MODIFIED RESIDUE SEQADV 2GUP MSE A 208 GB 14973654 MET 208 MODIFIED RESIDUE SEQRES 1 A 292 SER ASN ALA MSE THR ILE ALA THR ILE ASP ILE GLY GLY SEQRES 2 A 292 THR GLY ILE LYS PHE ALA SER LEU THR PRO ASP GLY LYS SEQRES 3 A 292 ILE LEU ASP LYS THR SER ILE SER THR PRO GLU ASN LEU SEQRES 4 A 292 GLU ASP LEU LEU ALA TRP LEU ASP GLN ARG LEU SER GLU SEQRES 5 A 292 GLN ASP TYR SER GLY ILE ALA MSE SER VAL PRO GLY ALA SEQRES 6 A 292 VAL ASN GLN GLU THR GLY VAL ILE ASP GLY PHE SER ALA SEQRES 7 A 292 VAL PRO TYR ILE HIS GLY PHE SER TRP TYR GLU ALA LEU SEQRES 8 A 292 SER SER TYR GLN LEU PRO VAL HIS LEU GLU ASN ASP ALA SEQRES 9 A 292 ASN CYS VAL GLY LEU SER GLU LEU LEU ALA HIS PRO GLU SEQRES 10 A 292 LEU GLU ASN ALA ALA CYS VAL VAL ILE GLY THR GLY ILE SEQRES 11 A 292 GLY GLY ALA MSE ILE ILE ASN GLY ARG LEU HIS ARG GLY SEQRES 12 A 292 ARG HIS GLY LEU GLY GLY GLU PHE GLY TYR MSE THR THR SEQRES 13 A 292 LEU ALA PRO ALA GLU LYS LEU ASN ASN TRP SER GLN LEU SEQRES 14 A 292 ALA SER THR GLY ASN MSE VAL ARG TYR VAL ILE GLU LYS SEQRES 15 A 292 SER GLY HIS THR ASP TRP ASP GLY ARG LYS ILE TYR GLN SEQRES 16 A 292 GLU ALA ALA ALA GLY ASN ILE LEU CYS GLN GLU ALA ILE SEQRES 17 A 292 GLU ARG MSE ASN ARG ASN LEU ALA GLN GLY LEU LEU ASN SEQRES 18 A 292 ILE GLN TYR LEU ILE ASP PRO GLY VAL ILE SER LEU GLY SEQRES 19 A 292 GLY SER ILE SER GLN ASN PRO ASP PHE ILE GLN GLY VAL SEQRES 20 A 292 LYS LYS ALA VAL GLU ASP PHE VAL ASP ALA TYR GLU GLU SEQRES 21 A 292 TYR THR VAL ALA PRO VAL ILE GLN ALA CYS THR TYR HIS SEQRES 22 A 292 ALA ASP ALA ASN LEU TYR GLY ALA LEU VAL ASN TRP LEU SEQRES 23 A 292 GLN GLU GLU LYS GLN TRP MODRES 2GUP MSE A 1 MET SELENOMETHIONINE MODRES 2GUP MSE A 57 MET SELENOMETHIONINE MODRES 2GUP MSE A 131 MET SELENOMETHIONINE MODRES 2GUP MSE A 151 MET SELENOMETHIONINE MODRES 2GUP MSE A 172 MET SELENOMETHIONINE MODRES 2GUP MSE A 208 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 57 8 HET MSE A 131 8 HET MSE A 151 8 HET MSE A 172 8 HET MSE A 208 8 HET GLC B 1 11 HET FRU B 2 12 HET GLC C 1 11 HET FRU C 2 12 HET GLC D 1 11 HET FRU D 2 12 HET TRS A 293 8 HETNAM MSE SELENOMETHIONINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN TRS TRIS BUFFER FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 GLC 3(C6 H12 O6) FORMUL 2 FRU 3(C6 H12 O6) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *84(H2 O) HELIX 1 1 ASN A 35 SER A 48 1 14 HELIX 2 2 VAL A 76 HIS A 80 5 5 HELIX 3 3 SER A 83 LEU A 88 1 6 HELIX 4 4 SER A 89 GLN A 92 5 4 HELIX 5 5 ASP A 100 HIS A 112 1 13 HELIX 6 6 GLU A 147 MSE A 151 5 5 HELIX 7 7 ASN A 162 SER A 168 1 7 HELIX 8 8 SER A 168 GLY A 181 1 14 HELIX 9 9 ASP A 186 ALA A 196 1 11 HELIX 10 10 ASN A 198 ASP A 224 1 27 HELIX 11 11 GLY A 232 GLN A 236 5 5 HELIX 12 12 ASN A 237 TYR A 255 1 19 HELIX 13 13 ASP A 272 GLU A 286 1 15 SHEET 1 A 5 ILE A 24 ILE A 30 0 SHEET 2 A 5 GLY A 12 LEU A 18 -1 N SER A 17 O LEU A 25 SHEET 3 A 5 ILE A 3 GLY A 9 -1 N THR A 5 O ALA A 16 SHEET 4 A 5 GLY A 54 VAL A 59 1 O SER A 58 N ILE A 6 SHEET 5 A 5 VAL A 95 ASN A 99 1 O GLU A 98 N VAL A 59 SHEET 1 B 2 ALA A 62 VAL A 63 0 SHEET 2 B 2 ILE A 70 ASP A 71 -1 O ASP A 71 N ALA A 62 SHEET 1 C 5 ARG A 136 HIS A 138 0 SHEET 2 C 5 ILE A 127 ILE A 133 -1 N ILE A 133 O ARG A 136 SHEET 3 C 5 ALA A 118 ILE A 123 -1 N VAL A 122 O GLY A 128 SHEET 4 C 5 VAL A 227 GLY A 231 1 O GLY A 231 N VAL A 121 SHEET 5 C 5 ILE A 264 ALA A 266 1 O GLN A 265 N LEU A 230 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C ALA A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N SER A 58 1555 1555 1.31 LINK C ALA A 130 N MSE A 131 1555 1555 1.32 LINK C MSE A 131 N ILE A 132 1555 1555 1.34 LINK C TYR A 150 N MSE A 151 1555 1555 1.32 LINK C MSE A 151 N THR A 152 1555 1555 1.31 LINK C ASN A 171 N MSE A 172 1555 1555 1.34 LINK C MSE A 172 N VAL A 173 1555 1555 1.34 LINK C ARG A 207 N MSE A 208 1555 1555 1.32 LINK C MSE A 208 N ASN A 209 1555 1555 1.33 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.46 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.44 LINK C1 GLC D 1 O2 FRU D 2 1555 1555 1.43 CRYST1 54.678 114.665 117.677 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008498 0.00000