HEADER CHAPERONE 29-MAY-04 1VZY TITLE CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS HSP33 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 33 KDA CHAPERONIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEAT SHOCK PROTEIN 33 HOMOLOG, HSP33; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: ZN ATOMS, MUTATION E100A AND Q101A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS CHAPERONE, HEAT SHOCK PROTEIN, CRYSTAL ENGINEERING, MOLECULAR KEYWDS 2 CHAPERONE, REDOX-ACTIVE CENTER, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MCSG, MIDWEST CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR I.K.JANDA,Y.DEVEDJIEV,U.DEREWENDA,Z.DAUTER,J.BIELNICKI,D.R.COOPER, AUTHOR 2 A.JOACHIMIAK,Z.S.DEREWENDA,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 6 21-AUG-19 1VZY 1 REMARK REVDAT 5 28-MAR-18 1VZY 1 SOURCE JRNL REVDAT 4 24-FEB-09 1VZY 1 VERSN REVDAT 3 31-JAN-05 1VZY 1 KEYWDS REVDAT 2 19-JAN-05 1VZY 1 KEYWDS AUTHOR REMARK REVDAT 1 06-OCT-04 1VZY 0 JRNL AUTH I.JANDA,Y.DEVEDJIEV,U.DEREWENDA,Z.DAUTER,J.BIELNICKI, JRNL AUTH 2 D.R.COOPER,P.C.GRAF,A.JOACHIMIAK,U.JAKOB,Z.S.DEREWENDA JRNL TITL THE CRYSTAL STRUCTURE OF THE REDUCED, ZN2+-BOUND FORM OF THE JRNL TITL 2 B. SUBTILIS HSP33 CHAPERONE AND ITS IMPLICATIONS FOR THE JRNL TITL 3 ACTIVATION MECHANISM. JRNL REF STRUCTURE V. 12 1901 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15458638 JRNL DOI 10.1016/J.STR.2004.08.003 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4464 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4141 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6026 ; 1.848 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9653 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 6.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 693 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4991 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 824 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 869 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4701 ; 0.255 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2706 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.619 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.651 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2860 ; 1.335 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4578 ; 2.260 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1604 ; 3.210 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 5.019 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGION IN MOLECULE B (FROM GLY 252 - GLY REMARK 3 264) WAS MODELED BASED ON CORRSEPONDING FRAGMENT IN MOLECULE A, REMARK 3 AND OCCUPANCIES WERE SET TO 0.01. REMARK 4 REMARK 4 1VZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1290015132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28310,1.2837 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M K/NA TARTRATE, 0.1 M HEPES PH REMARK 280 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.48033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.96067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.96067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.48033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION GLU 100 ALA AND GLN 101 ALA IN CHAINS REMARK 400 A AND B. REMARK 400 REMARK 400 REDOX REGULATED MOLECULAR CHAPERONE. PROTECTS BOTH REMARK 400 THERMALLY UNFOLDING AND OXIDATIVELY DAMAGED PROTEINS FROM REMARK 400 IRREVERSIBLE AGGREGATION. PLAYS AN IMPORTANT ROLE IN THE REMARK 400 BACTERIAL DEFENSE SYSTEM. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 291 REMARK 465 ASP B 287 REMARK 465 GLN B 288 REMARK 465 THR B 289 REMARK 465 THR B 290 REMARK 465 ARG B 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 290 CG2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ACT A 1292 O HOH A 2146 0.97 REMARK 500 O ACT A 1292 O HOH A 2146 1.41 REMARK 500 OXT ACT A 1292 O HOH A 2146 1.56 REMARK 500 CH3 ACT A 1292 O HOH A 2146 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2084 O HOH A 2084 4555 0.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 1 CG MET A 1 SD 0.158 REMARK 500 MET B 24 CG MET B 24 SD 0.207 REMARK 500 VAL B 218 CB VAL B 218 CG1 -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 24 CG - SD - CE ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 107 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 142 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 136 -58.91 -125.72 REMARK 500 LEU A 139 -51.86 83.15 REMARK 500 ASN A 167 -6.52 82.61 REMARK 500 GLN A 197 -12.20 171.43 REMARK 500 GLN A 263 176.30 175.47 REMARK 500 LEU B 139 -51.88 85.36 REMARK 500 ASN B 167 -2.24 77.99 REMARK 500 GLU B 186 -39.50 172.36 REMARK 500 ARG B 241 -60.73 135.98 REMARK 500 LYS B 252 -73.60 -76.39 REMARK 500 ASP B 256 -102.84 -75.18 REMARK 500 MET B 257 -35.79 11.85 REMARK 500 ILE B 258 -98.29 -98.54 REMARK 500 GLU B 259 -7.95 -10.28 REMARK 500 LEU B 285 -61.43 -131.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1291 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 235 SG REMARK 620 2 CYS A 268 SG 108.2 REMARK 620 3 CYS A 237 SG 111.9 107.1 REMARK 620 4 CYS A 271 SG 119.3 106.8 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1287 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 271 SG REMARK 620 2 CYS B 235 SG 122.4 REMARK 620 3 CYS B 268 SG 111.5 108.2 REMARK 620 4 CYS B 237 SG 100.2 107.4 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1289 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1014 RELATED DB: TARGETDB DBREF 1VZY A 1 291 UNP P37565 HSLO_BACSU 1 291 DBREF 1VZY B 1 291 UNP P37565 HSLO_BACSU 1 291 SEQADV 1VZY ALA A 100 UNP P37565 GLU 100 ENGINEERED MUTATION SEQADV 1VZY ALA A 101 UNP P37565 GLN 101 ENGINEERED MUTATION SEQADV 1VZY ALA B 100 UNP P37565 GLU 100 ENGINEERED MUTATION SEQADV 1VZY ALA B 101 UNP P37565 GLN 101 ENGINEERED MUTATION SEQRES 1 A 291 MET ASP TYR LEU VAL LYS ALA LEU ALA TYR ASP GLY LYS SEQRES 2 A 291 VAL ARG ALA TYR ALA ALA ARG THR THR ASP MET VAL ASN SEQRES 3 A 291 GLU GLY GLN ARG ARG HIS GLY THR TRP PRO THR ALA SER SEQRES 4 A 291 ALA ALA LEU GLY ARG THR MET THR ALA SER LEU MET LEU SEQRES 5 A 291 GLY ALA MET LEU LYS GLY ASP ASP LYS LEU THR VAL LYS SEQRES 6 A 291 ILE GLU GLY GLY GLY PRO ILE GLY ALA ILE VAL ALA ASP SEQRES 7 A 291 ALA ASN ALA LYS GLY GLU VAL ARG ALA TYR VAL SER ASN SEQRES 8 A 291 PRO GLN VAL HIS PHE ASP LEU ASN ALA ALA GLY LYS LEU SEQRES 9 A 291 ASP VAL ARG ARG ALA VAL GLY THR ASN GLY THR LEU SER SEQRES 10 A 291 VAL VAL LYS ASP LEU GLY LEU ARG GLU PHE PHE THR GLY SEQRES 11 A 291 GLN VAL GLU ILE VAL SER GLY GLU LEU GLY ASP ASP PHE SEQRES 12 A 291 THR TYR TYR LEU VAL SER SER GLU GLN VAL PRO SER SER SEQRES 13 A 291 VAL GLY VAL GLY VAL LEU VAL ASN PRO ASP ASN THR ILE SEQRES 14 A 291 LEU ALA ALA GLY GLY PHE ILE ILE GLN LEU MET PRO GLY SEQRES 15 A 291 THR ASP ASP GLU THR ILE THR LYS ILE GLU GLN ARG LEU SEQRES 16 A 291 SER GLN VAL GLU PRO ILE SER LYS LEU ILE GLN LYS GLY SEQRES 17 A 291 LEU THR PRO GLU GLU ILE LEU GLU GLU VAL LEU GLY GLU SEQRES 18 A 291 LYS PRO GLU ILE LEU GLU THR MET PRO VAL ARG PHE HIS SEQRES 19 A 291 CYS PRO CYS SER LYS GLU ARG PHE GLU THR ALA ILE LEU SEQRES 20 A 291 GLY LEU GLY LYS LYS GLU ILE GLN ASP MET ILE GLU GLU SEQRES 21 A 291 ASP GLY GLN ALA GLU ALA VAL CYS HIS PHE CYS ASN GLU SEQRES 22 A 291 LYS TYR LEU PHE THR LYS GLU GLU LEU GLU GLY LEU ARG SEQRES 23 A 291 ASP GLN THR THR ARG SEQRES 1 B 291 MET ASP TYR LEU VAL LYS ALA LEU ALA TYR ASP GLY LYS SEQRES 2 B 291 VAL ARG ALA TYR ALA ALA ARG THR THR ASP MET VAL ASN SEQRES 3 B 291 GLU GLY GLN ARG ARG HIS GLY THR TRP PRO THR ALA SER SEQRES 4 B 291 ALA ALA LEU GLY ARG THR MET THR ALA SER LEU MET LEU SEQRES 5 B 291 GLY ALA MET LEU LYS GLY ASP ASP LYS LEU THR VAL LYS SEQRES 6 B 291 ILE GLU GLY GLY GLY PRO ILE GLY ALA ILE VAL ALA ASP SEQRES 7 B 291 ALA ASN ALA LYS GLY GLU VAL ARG ALA TYR VAL SER ASN SEQRES 8 B 291 PRO GLN VAL HIS PHE ASP LEU ASN ALA ALA GLY LYS LEU SEQRES 9 B 291 ASP VAL ARG ARG ALA VAL GLY THR ASN GLY THR LEU SER SEQRES 10 B 291 VAL VAL LYS ASP LEU GLY LEU ARG GLU PHE PHE THR GLY SEQRES 11 B 291 GLN VAL GLU ILE VAL SER GLY GLU LEU GLY ASP ASP PHE SEQRES 12 B 291 THR TYR TYR LEU VAL SER SER GLU GLN VAL PRO SER SER SEQRES 13 B 291 VAL GLY VAL GLY VAL LEU VAL ASN PRO ASP ASN THR ILE SEQRES 14 B 291 LEU ALA ALA GLY GLY PHE ILE ILE GLN LEU MET PRO GLY SEQRES 15 B 291 THR ASP ASP GLU THR ILE THR LYS ILE GLU GLN ARG LEU SEQRES 16 B 291 SER GLN VAL GLU PRO ILE SER LYS LEU ILE GLN LYS GLY SEQRES 17 B 291 LEU THR PRO GLU GLU ILE LEU GLU GLU VAL LEU GLY GLU SEQRES 18 B 291 LYS PRO GLU ILE LEU GLU THR MET PRO VAL ARG PHE HIS SEQRES 19 B 291 CYS PRO CYS SER LYS GLU ARG PHE GLU THR ALA ILE LEU SEQRES 20 B 291 GLY LEU GLY LYS LYS GLU ILE GLN ASP MET ILE GLU GLU SEQRES 21 B 291 ASP GLY GLN ALA GLU ALA VAL CYS HIS PHE CYS ASN GLU SEQRES 22 B 291 LYS TYR LEU PHE THR LYS GLU GLU LEU GLU GLY LEU ARG SEQRES 23 B 291 ASP GLN THR THR ARG HET ZN A1291 1 HET ACT A1292 4 HET ACT A1293 4 HET ACT A1294 4 HET ACT A1295 4 HET ZN B1287 1 HET ACT B1288 4 HET ACT B1289 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACT 6(C2 H3 O2 1-) FORMUL 11 HOH *277(H2 O) HELIX 1 1 THR A 21 GLY A 33 1 13 HELIX 2 2 TRP A 35 ALA A 54 1 20 HELIX 3 3 ASP A 105 GLY A 111 1 7 HELIX 4 4 LEU A 139 GLN A 152 1 14 HELIX 5 5 ASP A 184 SER A 196 1 13 HELIX 6 6 PRO A 200 GLY A 208 1 9 HELIX 7 7 THR A 210 GLY A 220 1 11 HELIX 8 8 SER A 238 GLY A 248 1 11 HELIX 9 9 GLY A 250 GLY A 262 1 13 HELIX 10 10 LYS A 279 THR A 289 1 11 HELIX 11 11 THR B 21 GLY B 33 1 13 HELIX 12 12 TRP B 35 ALA B 54 1 20 HELIX 13 13 ASP B 105 GLY B 111 1 7 HELIX 14 14 LEU B 139 SER B 150 1 12 HELIX 15 15 GLU B 186 VAL B 198 1 13 HELIX 16 16 PRO B 200 LYS B 207 1 8 HELIX 17 17 THR B 210 GLY B 220 1 11 HELIX 18 18 SER B 238 GLY B 248 1 11 HELIX 19 19 LYS B 251 GLU B 260 1 10 HELIX 20 20 LYS B 279 GLY B 284 1 6 SHEET 1 AA 5 SER A 155 VAL A 163 0 SHEET 2 AA 5 ILE A 169 LEU A 179 -1 N LEU A 170 O LEU A 162 SHEET 3 AA 5 VAL A 14 ARG A 20 -1 O ARG A 15 N GLN A 178 SHEET 4 AA 5 TYR A 3 ALA A 9 -1 O TYR A 3 N ARG A 20 SHEET 5 AA 5 GLU A 224 PRO A 230 -1 O GLU A 224 N LEU A 8 SHEET 1 AB12 ARG A 232 PHE A 233 0 SHEET 2 AB12 GLU A 84 VAL A 89 1 N VAL A 85 O ARG A 232 SHEET 3 AB12 ALA A 74 ASN A 80 -1 O VAL A 76 N TYR A 88 SHEET 4 AB12 LYS A 61 GLU A 67 -1 O LEU A 62 N ALA A 79 SHEET 5 AB12 THR A 115 ASP A 121 -1 O THR A 115 N GLU A 67 SHEET 6 AB12 GLU A 126 GLU A 133 -1 O PHE A 128 N LYS A 120 SHEET 7 AB12 GLU B 126 GLU B 133 -1 O PHE B 127 N GLN A 131 SHEET 8 AB12 THR B 115 GLY B 123 -1 O LEU B 116 N VAL B 132 SHEET 9 AB12 LYS B 61 GLU B 67 -1 O LYS B 61 N ASP B 121 SHEET 10 AB12 ILE B 75 ASN B 80 -1 O ILE B 75 N ILE B 66 SHEET 11 AB12 GLU B 84 VAL B 89 -1 O GLU B 84 N ASN B 80 SHEET 12 AB12 ARG B 232 PHE B 233 1 O ARG B 232 N VAL B 85 SHEET 1 AC 2 GLN A 263 VAL A 267 0 SHEET 2 AC 2 LYS A 274 THR A 278 -1 O TYR A 275 N ALA A 266 SHEET 1 BA 5 SER B 155 VAL B 163 0 SHEET 2 BA 5 ILE B 169 LEU B 179 -1 N LEU B 170 O LEU B 162 SHEET 3 BA 5 VAL B 14 ARG B 20 -1 O ARG B 15 N GLN B 178 SHEET 4 BA 5 TYR B 3 ALA B 9 -1 O TYR B 3 N ARG B 20 SHEET 5 BA 5 GLU B 224 PRO B 230 -1 O GLU B 224 N LEU B 8 SHEET 1 BB 2 GLN B 263 VAL B 267 0 SHEET 2 BB 2 LYS B 274 THR B 278 -1 O TYR B 275 N ALA B 266 LINK ZN ZN A1291 SG CYS A 235 1555 1555 2.22 LINK ZN ZN A1291 SG CYS A 268 1555 1555 2.44 LINK ZN ZN A1291 SG CYS A 237 1555 1555 2.26 LINK ZN ZN A1291 SG CYS A 271 1555 1555 2.26 LINK ZN ZN B1287 SG CYS B 271 1555 1555 2.23 LINK ZN ZN B1287 SG CYS B 235 1555 1555 2.22 LINK ZN ZN B1287 SG CYS B 268 1555 1555 2.28 LINK ZN ZN B1287 SG CYS B 237 1555 1555 2.44 SITE 1 AC1 4 CYS A 235 CYS A 237 CYS A 268 CYS A 271 SITE 1 AC2 8 SER A 238 LYS A 239 TYR A 275 HOH A2145 SITE 2 AC2 8 HOH A2146 ASN B 164 PRO B 165 ASP B 166 SITE 1 AC3 3 TRP A 35 PRO A 36 ASN A 167 SITE 1 AC4 3 ARG A 125 ALA A 266 VAL A 267 SITE 1 AC5 3 LYS A 239 TYR A 275 LEU A 276 SITE 1 AC6 4 CYS B 235 CYS B 237 CYS B 268 CYS B 271 SITE 1 AC7 3 ARG B 86 ARG B 241 HIS B 269 SITE 1 AC8 2 ALA B 100 ARG B 107 CRYST1 115.292 115.292 106.441 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008674 0.005008 0.000000 0.00000 SCALE2 0.000000 0.010015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009395 0.00000