HEADER HYDROLASE 04-MAR-04 1SKA TITLE CRYSTALLOGRAPHIC SNAPSHOTS OF ASPERGILLUS FUMIGATUS PHYTASE REVEALING TITLE 2 ITS ENZYMATIC DYNAMICS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHYTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYO-INOSITOL-HEXAPHOSPHATE 3- PHOSPHOHYDROLASE A, 3 PHYTASE COMPND 5 A, MYO-INOSITOL HEXAKISPHOSPHATE PHOSPHOHYDROLASE A; COMPND 6 EC: 3.1.3.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 5085; SOURCE 4 GENE: PHYA; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS SMALL ALPHA DOMAIN, BIG ALPHA/BETA DOMAIN, CATALYTIC SITES, WATER KEYWDS 2 STRUCTURES, CATALYTIC DYNAMICS, PRODUCT RELEASE PATHWAY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.LIU,Q.HUANG,X.G.LEI,Q.HAO REVDAT 4 29-JUL-20 1SKA 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 1SKA 1 VERSN REVDAT 2 24-FEB-09 1SKA 1 VERSN REVDAT 1 28-SEP-04 1SKA 0 JRNL AUTH Q.LIU,Q.HUANG,X.G.LEI,Q.HAO JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF ASPERGILLUS FUMIGATUS PHYTASE, JRNL TITL 2 REVEALING ITS ENZYMATIC DYNAMICS JRNL REF STRUCTURE V. 12 1575 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15341723 JRNL DOI 10.1016/J.STR.2004.06.015 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 39429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : THROUGHOUT REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 1.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.96900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.06450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.61250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.06450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.96900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.61250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 SER A 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 394 N LYS A 395 1.30 REMARK 500 O GLU A 394 CG LYS A 395 1.37 REMARK 500 N THR A 331 O HOH A 947 2.15 REMARK 500 O HOH A 661 O HOH A 935 2.17 REMARK 500 OE1 GLN A 260 O HOH A 931 2.17 REMARK 500 CB ASN A 265 O HOH A 950 2.18 REMARK 500 O HOH A 740 O HOH A 800 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 81 CE LYS A 222 4445 1.39 REMARK 500 CA ALA A 81 CE LYS A 222 4445 1.53 REMARK 500 CB ALA A 81 NZ LYS A 222 4445 1.77 REMARK 500 OD1 ASP A 12 CG LEU A 159 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 17 CB CYS A 17 SG 0.108 REMARK 500 VAL A 132 CB VAL A 132 CG2 0.130 REMARK 500 GLN A 260 CD GLN A 260 NE2 0.187 REMARK 500 VAL A 363 CB VAL A 363 CG2 0.143 REMARK 500 TYR A 372 CE1 TYR A 372 CZ 0.092 REMARK 500 ASP A 425 CB ASP A 425 CG 0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 56 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 124 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 159 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 ASP A 188 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 217 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP A 239 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ALA A 330 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ASP A 339 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 425 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -39.40 64.54 REMARK 500 THR A 313 -93.37 -111.74 REMARK 500 PHE A 326 70.39 -155.30 REMARK 500 THR A 331 -33.84 48.24 REMARK 500 SER A 337 -148.33 -126.82 REMARK 500 SER A 393 -85.47 -35.27 REMARK 500 LYS A 395 -8.69 -172.13 REMARK 500 ASP A 405 -3.69 81.08 REMARK 500 LEU A 430 35.61 -82.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 395 GLU A 396 127.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QWO RELATED DB: PDB REMARK 900 RELATED ID: 1SK8 RELATED DB: PDB REMARK 900 RELATED ID: 1SK9 RELATED DB: PDB REMARK 900 RELATED ID: 1SKB RELATED DB: PDB DBREF 1SKA A 5 443 UNP O00092 PHYA_ASPFU 27 465 SEQRES 1 A 439 SER LYS SER CYS ASP THR VAL ASP LEU GLY TYR GLN CYS SEQRES 2 A 439 SER PRO ALA THR SER HIS LEU TRP GLY GLN TYR SER PRO SEQRES 3 A 439 PHE PHE SER LEU GLU ASP GLU LEU SER VAL SER SER LYS SEQRES 4 A 439 LEU PRO LYS ASP CYS ARG ILE THR LEU VAL GLN VAL LEU SEQRES 5 A 439 SER ARG HIS GLY ALA ARG TYR PRO THR SER SER LYS SER SEQRES 6 A 439 LYS LYS TYR LYS LYS LEU VAL THR ALA ILE GLN ALA ASN SEQRES 7 A 439 ALA THR ASP PHE LYS GLY LYS PHE ALA PHE LEU LYS THR SEQRES 8 A 439 TYR ASN TYR THR LEU GLY ALA ASP ASP LEU THR PRO PHE SEQRES 9 A 439 GLY GLU GLN GLN LEU VAL ASN SER GLY ILE LYS PHE TYR SEQRES 10 A 439 GLN ARG TYR LYS ALA LEU ALA ARG SER VAL VAL PRO PHE SEQRES 11 A 439 ILE ARG ALA SER GLY SER ASP ARG VAL ILE ALA SER GLY SEQRES 12 A 439 GLU LYS PHE ILE GLU GLY PHE GLN GLN ALA LYS LEU ALA SEQRES 13 A 439 ASP PRO GLY ALA THR ASN ARG ALA ALA PRO ALA ILE SER SEQRES 14 A 439 VAL ILE ILE PRO GLU SER GLU THR PHE ASN ASN THR LEU SEQRES 15 A 439 ASP HIS GLY VAL CYS THR LYS PHE GLU ALA SER GLN LEU SEQRES 16 A 439 GLY ASP GLU VAL ALA ALA ASN PHE THR ALA LEU PHE ALA SEQRES 17 A 439 PRO ASP ILE ARG ALA ARG ALA GLU LYS HIS LEU PRO GLY SEQRES 18 A 439 VAL THR LEU THR ASP GLU ASP VAL VAL SER LEU MET ASP SEQRES 19 A 439 MET CYS SER PHE ASP THR VAL ALA ARG THR SER ASP ALA SEQRES 20 A 439 SER GLN LEU SER PRO PHE CYS GLN LEU PHE THR HIS ASN SEQRES 21 A 439 GLU TRP LYS LYS TYR ASN TYR LEU GLN SER LEU GLY LYS SEQRES 22 A 439 TYR TYR GLY TYR GLY ALA GLY ASN PRO LEU GLY PRO ALA SEQRES 23 A 439 GLN GLY ILE GLY PHE THR ASN GLU LEU ILE ALA ARG LEU SEQRES 24 A 439 THR ARG SER PRO VAL GLN ASP HIS THR SER THR ASN SER SEQRES 25 A 439 THR LEU VAL SER ASN PRO ALA THR PHE PRO LEU ASN ALA SEQRES 26 A 439 THR MET TYR VAL ASP PHE SER HIS ASP ASN SER MET VAL SEQRES 27 A 439 SER ILE PHE PHE ALA LEU GLY LEU TYR ASN GLY THR GLU SEQRES 28 A 439 PRO LEU SER ARG THR SER VAL GLU SER ALA LYS GLU LEU SEQRES 29 A 439 ASP GLY TYR SER ALA SER TRP VAL VAL PRO PHE GLY ALA SEQRES 30 A 439 ARG ALA TYR PHE GLU THR MET GLN CYS LYS SER GLU LYS SEQRES 31 A 439 GLU PRO LEU VAL ARG ALA LEU ILE ASN ASP ARG VAL VAL SEQRES 32 A 439 PRO LEU HIS GLY CYS ASP VAL ASP LYS LEU GLY ARG CYS SEQRES 33 A 439 LYS LEU ASN ASP PHE VAL LYS GLY LEU SER TRP ALA ARG SEQRES 34 A 439 SER GLY GLY ASN TRP GLY GLU CYS PHE SER MODRES 1SKA ASN A 184 ASN GLYCOSYLATION SITE MODRES 1SKA ASN A 316 ASN GLYCOSYLATION SITE MODRES 1SKA ASN A 353 ASN GLYCOSYLATION SITE MODRES 1SKA ASN A 207 ASN GLYCOSYLATION SITE HET NAG A 503 14 HET NAG A 504 14 HET NAG A 505 14 HET NAG A 506 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 6 HOH *493(H2 O) HELIX 1 1 SER A 18 HIS A 23 1 6 HELIX 2 2 TRP A 25 SER A 29 5 5 HELIX 3 3 THR A 65 ALA A 83 1 19 HELIX 4 4 LYS A 87 THR A 95 5 9 HELIX 5 5 THR A 106 TYR A 124 1 19 HELIX 6 6 TYR A 124 ARG A 129 1 6 HELIX 7 7 SER A 140 ALA A 160 1 21 HELIX 8 8 CYS A 192 ALA A 197 1 6 HELIX 9 9 GLN A 199 HIS A 223 1 25 HELIX 10 10 THR A 230 THR A 249 1 20 HELIX 11 11 PHE A 258 PHE A 262 5 5 HELIX 12 12 THR A 263 TYR A 282 1 20 HELIX 13 13 GLY A 289 GLN A 292 5 4 HELIX 14 14 GLY A 293 ARG A 306 1 14 HELIX 15 15 ASN A 316 SER A 321 1 6 HELIX 16 16 HIS A 338 LEU A 349 1 12 HELIX 17 17 SER A 373 VAL A 378 1 6 HELIX 18 18 LEU A 423 LEU A 430 1 8 HELIX 19 19 LEU A 430 GLY A 436 1 7 HELIX 20 20 ASN A 438 PHE A 443 5 6 SHEET 1 A 2 ASP A 9 THR A 10 0 SHEET 2 A 2 GLY A 14 TYR A 15 -1 O GLY A 14 N THR A 10 SHEET 1 B 7 ILE A 173 ILE A 177 0 SHEET 2 B 7 PHE A 134 SER A 138 1 N ALA A 137 O ILE A 177 SHEET 3 B 7 MET A 332 PHE A 336 1 O MET A 332 N PHE A 134 SHEET 4 B 7 CYS A 48 SER A 57 1 N VAL A 55 O TYR A 333 SHEET 5 B 7 ARG A 383 CYS A 391 -1 O PHE A 386 N GLN A 54 SHEET 6 B 7 LEU A 398 ILE A 403 -1 O ARG A 400 N GLU A 387 SHEET 7 B 7 ARG A 406 VAL A 407 -1 O ARG A 406 N ILE A 403 SHEET 1 C 7 ILE A 173 ILE A 177 0 SHEET 2 C 7 PHE A 134 SER A 138 1 N ALA A 137 O ILE A 177 SHEET 3 C 7 MET A 332 PHE A 336 1 O MET A 332 N PHE A 134 SHEET 4 C 7 CYS A 48 SER A 57 1 N VAL A 55 O TYR A 333 SHEET 5 C 7 ARG A 383 CYS A 391 -1 O PHE A 386 N GLN A 54 SHEET 6 C 7 LEU A 398 ILE A 403 -1 O ARG A 400 N GLU A 387 SHEET 7 C 7 CYS A 421 LYS A 422 -1 O CYS A 421 N VAL A 399 SSBOND 1 CYS A 8 CYS A 17 1555 1555 1.94 SSBOND 2 CYS A 48 CYS A 391 1555 1555 2.00 SSBOND 3 CYS A 192 CYS A 442 1555 1555 2.02 SSBOND 4 CYS A 241 CYS A 259 1555 1555 2.05 SSBOND 5 CYS A 413 CYS A 421 1555 1555 2.01 LINK ND2 ASN A 184 C1 NAG A 503 1555 1555 1.49 LINK ND2 ASN A 207 C1 NAG A 506 1555 1555 1.46 LINK ND2 ASN A 316 C1 NAG A 504 1555 1555 1.47 LINK ND2 ASN A 353 C1 NAG A 505 1555 1555 1.45 CRYST1 39.938 95.225 98.129 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010191 0.00000