HEADER MEMBRANE PROTEIN 25-AUG-03 1Q9F TITLE NMR STRUCTURE OF THE OUTER MEMBRANE PROTEIN OMPX IN DHPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN X; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OUTER MEMBRANE PROTEIN OMPX; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: OMPX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3B KEYWDS OMPX, MEMBRANE PROTEIN, TROSY, DHPC, DETERGENTS, LIPIDS, MICELLES EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.FERNANDEZ,C.HILTY,G.WIDER,P.GUNTERT,K.WUTHRICH REVDAT 3 27-OCT-21 1Q9F 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Q9F 1 VERSN REVDAT 1 23-MAR-04 1Q9F 0 JRNL AUTH C.FERNANDEZ,C.HILTY,G.WIDER,P.GUNTERT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE INTEGRAL MEMBRANE PROTEIN OMPX. JRNL REF J.MOL.BIOL. V. 336 1211 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15037080 JRNL DOI 10.1016/J.JMB.2003.09.014 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.HILTY,C.FERNANDEZ,G.WIDER,K.WUTHRICH REMARK 1 TITL SIDE CHAIN NMR ASSIGNMENTS IN THE MEMBRANE PROTEIN OMPX REMARK 1 TITL 2 RECONSTITUTED IN DHPC MICELLES REMARK 1 REF J.BIOMOL.NMR V. 23 289 2002 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1020218419190 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.HILTY,G.WIDER,C.FERNANDEZ,K.WUTHRICH REMARK 1 TITL STEREOSPECIFIC ASSIGNMENTS OF THE ISOPROPYL METHYL GROUPS OF REMARK 1 TITL 2 THE MEMBRANE PROTEIN OMPX IN DHPC MICELLES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP 2.6 REMARK 3 AUTHORS : KORADI, R., LUGINBUHL, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOMATIC IDENTIFICATION OF HYDROGEN REMARK 3 BOND CONSTRAINTS REMARK 4 REMARK 4 1Q9F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020082. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE, 100MM REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM OMPX U-15N,13C,2H; 2MM OMPX REMARK 210 U-15N,13C,2H/L,V,ID1- 13CH3; 2MM REMARK 210 OMPX U-15N,10%-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_H(C)(CC)-TOCSY-(CO)-[15N,1H]-TROSY; 2D_[13C, REMARK 210 1H]-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS (CANDID) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 6 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 10 TYR A 28 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 17 96.97 -45.38 REMARK 500 1 MET A 18 -2.44 -148.82 REMARK 500 1 LYS A 20 96.12 -66.68 REMARK 500 1 ASN A 34 -75.42 -167.59 REMARK 500 1 GLU A 47 29.41 -147.59 REMARK 500 1 ALA A 52 -86.37 -171.44 REMARK 500 1 SER A 53 78.85 -170.14 REMARK 500 1 SER A 54 -43.24 -162.99 REMARK 500 1 TYR A 57 76.38 -110.89 REMARK 500 1 ASN A 58 93.11 -51.94 REMARK 500 1 ASN A 60 176.90 61.58 REMARK 500 1 ASN A 74 -75.90 -132.43 REMARK 500 1 ASP A 75 74.98 -165.55 REMARK 500 1 TRP A 76 -60.28 -130.89 REMARK 500 1 GLU A 94 -70.16 -148.59 REMARK 500 1 THR A 97 -28.27 -156.24 REMARK 500 1 TYR A 98 -150.77 50.57 REMARK 500 1 ASN A 100 -91.80 -80.18 REMARK 500 1 ASP A 101 24.06 -141.73 REMARK 500 1 SER A 103 104.40 132.67 REMARK 500 1 ASN A 120 12.18 -156.72 REMARK 500 1 ARG A 133 -74.88 75.27 REMARK 500 1 SER A 134 27.05 -148.75 REMARK 500 2 LYS A 20 106.12 -58.74 REMARK 500 2 ASN A 34 -37.97 -164.96 REMARK 500 2 ALA A 52 -87.31 -90.26 REMARK 500 2 SER A 53 79.46 -160.55 REMARK 500 2 SER A 54 84.85 57.41 REMARK 500 2 ASN A 58 -60.19 -171.49 REMARK 500 2 ASN A 60 19.25 -146.46 REMARK 500 2 ASN A 74 -79.31 -135.72 REMARK 500 2 ASP A 75 80.52 -158.69 REMARK 500 2 GLU A 94 -47.52 -150.60 REMARK 500 2 THR A 97 5.48 -67.53 REMARK 500 2 TYR A 98 -39.31 -24.59 REMARK 500 2 ASN A 120 -7.92 -174.68 REMARK 500 2 ARG A 133 18.89 58.45 REMARK 500 3 GLN A 15 -60.09 61.60 REMARK 500 3 MET A 18 -69.02 -152.91 REMARK 500 3 ASN A 34 -47.37 -159.21 REMARK 500 3 GLU A 47 -11.49 -141.78 REMARK 500 3 THR A 51 89.40 177.09 REMARK 500 3 SER A 53 -56.50 -148.27 REMARK 500 3 SER A 54 102.14 -161.99 REMARK 500 3 ASN A 60 -177.69 84.92 REMARK 500 3 ASN A 74 37.48 -88.73 REMARK 500 3 ASP A 75 -119.98 -149.51 REMARK 500 3 LYS A 99 117.27 -163.03 REMARK 500 3 GLU A 119 27.08 103.89 REMARK 500 3 ARG A 133 -64.84 56.75 REMARK 500 REMARK 500 THIS ENTRY HAS 320 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 138 THR A 139 2 146.66 REMARK 500 ILE A 40 GLY A 41 3 142.44 REMARK 500 TYR A 98 LYS A 99 5 148.84 REMARK 500 ALA A 1 THR A 2 6 149.82 REMARK 500 THR A 46 GLU A 47 8 149.97 REMARK 500 TYR A 87 GLY A 88 8 149.58 REMARK 500 GLY A 68 PRO A 69 9 145.94 REMARK 500 ILE A 40 GLY A 41 11 148.78 REMARK 500 TYR A 57 ASN A 58 11 -149.52 REMARK 500 LYS A 20 MET A 21 15 138.27 REMARK 500 ILE A 40 GLY A 41 15 144.72 REMARK 500 GLY A 41 SER A 42 15 143.72 REMARK 500 ASN A 74 ASP A 75 15 149.68 REMARK 500 SER A 134 VAL A 135 15 143.30 REMARK 500 ASN A 25 LEU A 26 16 149.72 REMARK 500 VAL A 121 ALA A 122 18 149.59 REMARK 500 GLY A 41 SER A 42 19 146.72 REMARK 500 PHE A 125 SER A 126 19 145.10 REMARK 500 GLY A 138 THR A 139 20 146.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 133 0.10 SIDE CHAIN REMARK 500 3 ARG A 29 0.13 SIDE CHAIN REMARK 500 3 ARG A 72 0.11 SIDE CHAIN REMARK 500 4 TYR A 30 0.09 SIDE CHAIN REMARK 500 4 ARG A 50 0.12 SIDE CHAIN REMARK 500 5 ARG A 29 0.08 SIDE CHAIN REMARK 500 5 TYR A 45 0.07 SIDE CHAIN REMARK 500 5 TYR A 95 0.07 SIDE CHAIN REMARK 500 6 TYR A 30 0.08 SIDE CHAIN REMARK 500 6 ARG A 72 0.10 SIDE CHAIN REMARK 500 6 TYR A 146 0.12 SIDE CHAIN REMARK 500 7 TYR A 57 0.10 SIDE CHAIN REMARK 500 7 TYR A 71 0.10 SIDE CHAIN REMARK 500 8 ARG A 50 0.10 SIDE CHAIN REMARK 500 8 TYR A 109 0.08 SIDE CHAIN REMARK 500 9 ARG A 29 0.11 SIDE CHAIN REMARK 500 9 TYR A 57 0.10 SIDE CHAIN REMARK 500 9 ARG A 72 0.08 SIDE CHAIN REMARK 500 9 TYR A 127 0.08 SIDE CHAIN REMARK 500 9 ARG A 133 0.08 SIDE CHAIN REMARK 500 10 TYR A 127 0.10 SIDE CHAIN REMARK 500 11 TYR A 45 0.07 SIDE CHAIN REMARK 500 12 ARG A 50 0.08 SIDE CHAIN REMARK 500 13 TYR A 80 0.07 SIDE CHAIN REMARK 500 13 ARG A 133 0.11 SIDE CHAIN REMARK 500 13 TYR A 146 0.08 SIDE CHAIN REMARK 500 14 TYR A 28 0.09 SIDE CHAIN REMARK 500 14 ARG A 29 0.10 SIDE CHAIN REMARK 500 14 ARG A 147 0.11 SIDE CHAIN REMARK 500 15 ARG A 29 0.09 SIDE CHAIN REMARK 500 15 TYR A 146 0.11 SIDE CHAIN REMARK 500 16 TYR A 71 0.07 SIDE CHAIN REMARK 500 16 TYR A 146 0.09 SIDE CHAIN REMARK 500 17 TYR A 28 0.08 SIDE CHAIN REMARK 500 17 TYR A 71 0.08 SIDE CHAIN REMARK 500 17 TYR A 105 0.07 SIDE CHAIN REMARK 500 18 ARG A 29 0.09 SIDE CHAIN REMARK 500 18 TYR A 62 0.07 SIDE CHAIN REMARK 500 18 ARG A 133 0.11 SIDE CHAIN REMARK 500 20 TYR A 62 0.10 SIDE CHAIN REMARK 500 20 ARG A 131 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ORM RELATED DB: PDB REMARK 900 NMR FOLD OF THE OUTER MEMBRANE PROTEIN OMPX IN DHPC MICELLES REMARK 900 RELATED ID: 4936 RELATED DB: BMRB DBREF 1Q9F A 1 148 UNP P36546 OMPX_ECOLI 24 171 SEQADV 1Q9F ASN A 100 UNP P36546 HIS 123 ENGINEERED MUTATION SEQRES 1 A 148 ALA THR SER THR VAL THR GLY GLY TYR ALA GLN SER ASP SEQRES 2 A 148 ALA GLN GLY GLN MET ASN LYS MET GLY GLY PHE ASN LEU SEQRES 3 A 148 LYS TYR ARG TYR GLU GLU ASP ASN SER PRO LEU GLY VAL SEQRES 4 A 148 ILE GLY SER PHE THR TYR THR GLU LYS SER ARG THR ALA SEQRES 5 A 148 SER SER GLY ASP TYR ASN LYS ASN GLN TYR TYR GLY ILE SEQRES 6 A 148 THR ALA GLY PRO ALA TYR ARG ILE ASN ASP TRP ALA SER SEQRES 7 A 148 ILE TYR GLY VAL VAL GLY VAL GLY TYR GLY LYS PHE GLN SEQRES 8 A 148 THR THR GLU TYR PRO THR TYR LYS ASN ASP THR SER ASP SEQRES 9 A 148 TYR GLY PHE SER TYR GLY ALA GLY LEU GLN PHE ASN PRO SEQRES 10 A 148 MET GLU ASN VAL ALA LEU ASP PHE SER TYR GLU GLN SER SEQRES 11 A 148 ARG ILE ARG SER VAL ASP VAL GLY THR TRP ILE ALA GLY SEQRES 12 A 148 VAL GLY TYR ARG PHE SHEET 1 A 7 ALA A 10 ALA A 14 0 SHEET 2 A 7 VAL A 135 ARG A 147 -1 O GLY A 138 N ASP A 13 SHEET 3 A 7 ALA A 122 ILE A 132 -1 N ASP A 124 O GLY A 143 SHEET 4 A 7 TYR A 109 GLN A 114 -1 N LEU A 113 O PHE A 125 SHEET 5 A 7 SER A 78 TYR A 87 -1 N TYR A 80 O GLY A 112 SHEET 6 A 7 TYR A 63 TYR A 71 -1 N TYR A 63 O TYR A 87 SHEET 7 A 7 LEU A 37 TYR A 45 -1 N GLY A 38 O ALA A 70 SHEET 1 B 7 LEU A 26 LYS A 27 0 SHEET 2 B 7 THR A 4 GLY A 7 -1 N THR A 6 O LYS A 27 SHEET 3 B 7 VAL A 135 ARG A 147 -1 O VAL A 144 N GLY A 7 SHEET 4 B 7 ALA A 122 ILE A 132 -1 N ASP A 124 O GLY A 143 SHEET 5 B 7 TYR A 109 GLN A 114 -1 N LEU A 113 O PHE A 125 SHEET 6 B 7 SER A 78 TYR A 87 -1 N TYR A 80 O GLY A 112 SHEET 7 B 7 TYR A 105 GLY A 106 -1 O GLY A 106 N GLY A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20