HEADER MONOOXYGENASE 10-OCT-97 1PHM TITLE PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE (PHM) FROM RAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDYLGLYCINE MONOOXYGENASE, PEPTIDYLGLYCINE 2- COMPND 5 HYDROXYLASE, PHM; COMPND 6 EC: 1.14.17.3; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: TWO BOUND COPPERS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL_LINE: DG44; SOURCE 6 ORGAN: PITUITARY; SOURCE 7 ORGANELLE: SECRETORY GRANULE; SOURCE 8 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: DG44; SOURCE 12 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 13 EXPRESSION_SYSTEM_ORGANELLE: SECRETORY VESICLES; SOURCE 14 EXPRESSION_SYSTEM_CELLULAR_LOCATION: EXCRETED; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: CYTOMEGALOVIRUS; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PCIS KEYWDS MONOOXYGENASE, BIOACTIVE PEPTIDE ACTIVATION, ASCORBATE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.T.PRIGGE,L.M.AMZEL REVDAT 3 13-JUL-11 1PHM 1 VERSN REVDAT 2 24-FEB-09 1PHM 1 VERSN REVDAT 1 11-NOV-98 1PHM 0 JRNL AUTH S.T.PRIGGE,A.S.KOLHEKAR,B.A.EIPPER,R.E.MAINS,L.M.AMZEL JRNL TITL AMIDATION OF BIOACTIVE PEPTIDES: THE STRUCTURE OF JRNL TITL 2 PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE. JRNL REF SCIENCE V. 278 1300 1997 JRNL REFN ISSN 0036-8075 JRNL PMID 9360928 JRNL DOI 10.1126/SCIENCE.278.5341.1300 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 27074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1369 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1621 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 94 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.08 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.55 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.600 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.500 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PHM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SPHERICAL RH COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37300 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MADSYS, X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: MAD AT CU K-EDGE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.69000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.69000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 177 REMARK 465 ALA A 178 REMARK 465 PHE A 179 REMARK 465 ARG A 180 REMARK 465 ASP A 181 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 193 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -173.27 175.04 REMARK 500 THR A 130 -60.03 -92.10 REMARK 500 HIS A 244 -153.87 -96.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 245 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 509 DISTANCE = 5.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 357 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 ND1 REMARK 620 2 HIS A 108 ND1 163.9 REMARK 620 3 HIS A 172 ND1 92.6 98.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 358 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 242 NE2 REMARK 620 2 HIS A 244 NE2 108.8 REMARK 620 3 HOH A 360 O 112.6 112.9 REMARK 620 4 MET A 314 SD 109.4 116.6 96.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 359 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 235 NE2 REMARK 620 2 AZI A 361 N1 94.4 REMARK 620 3 GOL A 362 O1 166.1 76.9 REMARK 620 4 GOL A 362 O2 87.0 89.5 82.2 REMARK 620 5 HOH A 363 O 89.8 171.1 97.4 82.9 REMARK 620 6 HIS A 305 NE2 96.8 81.4 92.6 170.3 106.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CUB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE RESIDUES R240,Y318,N316 HYDROGEN REMARK 800 BOND TO PEPTIDYLGLYCINE SUBSTRATE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 DBREF 1PHM A 45 354 UNP P14925 AMD_RAT 45 354 SEQRES 1 A 310 ASN GLU CYS LEU GLY THR ILE GLY PRO VAL THR PRO LEU SEQRES 2 A 310 ASP ALA SER ASP PHE ALA LEU ASP ILE ARG MET PRO GLY SEQRES 3 A 310 VAL THR PRO LYS GLU SER ASP THR TYR PHE CYS MET SER SEQRES 4 A 310 MET ARG LEU PRO VAL ASP GLU GLU ALA PHE VAL ILE ASP SEQRES 5 A 310 PHE LYS PRO ARG ALA SER MET ASP THR VAL HIS HIS MET SEQRES 6 A 310 LEU LEU PHE GLY CYS ASN MET PRO SER SER THR GLY SER SEQRES 7 A 310 TYR TRP PHE CYS ASP GLU GLY THR CYS THR ASP LYS ALA SEQRES 8 A 310 ASN ILE LEU TYR ALA TRP ALA ARG ASN ALA PRO PRO THR SEQRES 9 A 310 ARG LEU PRO LYS GLY VAL GLY PHE ARG VAL GLY GLY GLU SEQRES 10 A 310 THR GLY SER LYS TYR PHE VAL LEU GLN VAL HIS TYR GLY SEQRES 11 A 310 ASP ILE SER ALA PHE ARG ASP ASN HIS LYS ASP CYS SER SEQRES 12 A 310 GLY VAL SER VAL HIS LEU THR ARG VAL PRO GLN PRO LEU SEQRES 13 A 310 ILE ALA GLY MET TYR LEU MET MET SER VAL ASP THR VAL SEQRES 14 A 310 ILE PRO PRO GLY GLU LYS VAL VAL ASN ALA ASP ILE SER SEQRES 15 A 310 CYS GLN TYR LYS MET TYR PRO MET HIS VAL PHE ALA TYR SEQRES 16 A 310 ARG VAL HIS THR HIS HIS LEU GLY LYS VAL VAL SER GLY SEQRES 17 A 310 TYR ARG VAL ARG ASN GLY GLN TRP THR LEU ILE GLY ARG SEQRES 18 A 310 GLN ASN PRO GLN LEU PRO GLN ALA PHE TYR PRO VAL GLU SEQRES 19 A 310 HIS PRO VAL ASP VAL THR PHE GLY ASP ILE LEU ALA ALA SEQRES 20 A 310 ARG CYS VAL PHE THR GLY GLU GLY ARG THR GLU ALA THR SEQRES 21 A 310 HIS ILE GLY GLY THR SER SER ASP GLU MET CYS ASN LEU SEQRES 22 A 310 TYR ILE MET TYR TYR MET GLU ALA LYS TYR ALA LEU SER SEQRES 23 A 310 PHE MET THR CYS THR LYS ASN VAL ALA PRO ASP MET PHE SEQRES 24 A 310 ARG THR ILE PRO ALA GLU ALA ASN ILE PRO ILE HET CU A 357 1 HET CU A 358 1 HET CU A 359 1 HET AZI A 361 3 HET GOL A 362 6 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HETNAM CU COPPER (II) ION HETNAM AZI AZIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CU 3(CU 2+) FORMUL 5 AZI N3 1- FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 HOH *226(H2 O) HELIX 1 1 GLY A 49 ILE A 51 5 3 HELIX 2 2 CYS A 126 GLU A 128 5 3 HELIX 3 3 PRO A 340 THR A 345 5 6 HELIX 4 4 ALA A 348 ASN A 351 5 4 SHEET 1 A 9 VAL A 54 PRO A 56 0 SHEET 2 A 9 ASP A 61 ARG A 67 -1 N ALA A 63 O THR A 55 SHEET 3 A 9 GLY A 188 THR A 194 -1 N LEU A 193 O PHE A 62 SHEET 4 A 9 GLU A 91 ARG A 100 -1 N ARG A 100 O GLY A 188 SHEET 5 A 9 VAL A 154 GLY A 159 -1 N VAL A 158 O ALA A 92 SHEET 6 A 9 LEU A 200 MET A 208 1 N LEU A 200 O GLY A 155 SHEET 7 A 9 ASN A 316 GLU A 324 -1 N MET A 323 O ILE A 201 SHEET 8 A 9 MET A 234 HIS A 242 -1 N HIS A 242 O ASN A 316 SHEET 9 A 9 VAL A 281 VAL A 283 -1 N VAL A 283 O MET A 234 SHEET 1 B 4 THR A 78 ARG A 85 0 SHEET 2 B 4 TYR A 166 TYR A 173 -1 N TYR A 173 O THR A 78 SHEET 3 B 4 VAL A 106 CYS A 114 -1 N CYS A 114 O TYR A 166 SHEET 4 B 4 ASN A 136 ALA A 142 -1 N TRP A 141 O MET A 109 SHEET 1 C 2 MET A 204 MET A 207 0 SHEET 2 C 2 PHE A 331 CYS A 334 1 N MET A 332 O MET A 204 SHEET 1 D 4 VAL A 221 GLN A 228 0 SHEET 2 D 4 ILE A 288 PHE A 295 -1 N PHE A 295 O VAL A 221 SHEET 3 D 4 GLY A 247 ARG A 256 -1 N VAL A 255 O ILE A 288 SHEET 4 D 4 GLN A 259 GLN A 266 -1 N GLN A 266 O VAL A 250 SSBOND 1 CYS A 47 CYS A 186 1555 1555 2.03 SSBOND 2 CYS A 81 CYS A 126 1555 1555 2.03 SSBOND 3 CYS A 114 CYS A 131 1555 1555 2.04 SSBOND 4 CYS A 227 CYS A 334 1555 1555 2.05 SSBOND 5 CYS A 293 CYS A 315 1555 1555 2.02 LINK CU CU A 357 ND1 HIS A 107 1555 1555 1.92 LINK CU CU A 357 ND1 HIS A 108 1555 1555 1.92 LINK CU CU A 357 ND1 HIS A 172 1555 1555 2.29 LINK CU CU A 358 NE2 HIS A 242 1555 1555 1.91 LINK CU CU A 358 NE2 HIS A 244 1555 1555 2.09 LINK CU CU A 359 NE2 HIS A 235 1555 1555 2.08 LINK CU CU A 359 N1 AZI A 361 1555 1555 1.84 LINK CU CU A 359 O1 GOL A 362 1555 1555 2.26 LINK CU CU A 359 O2 GOL A 362 1555 1555 2.28 LINK CU CU A 358 O HOH A 360 1555 1555 2.28 LINK CU CU A 358 SD MET A 314 1555 1555 2.42 LINK CU CU A 359 O HOH A 363 1555 1555 2.01 LINK CU CU A 359 NE2 HIS A 305 1555 4456 2.01 SITE 1 CUB 3 ARG A 240 TYR A 318 ASN A 316 SITE 1 AC1 3 HIS A 107 HIS A 108 HIS A 172 SITE 1 AC2 4 HIS A 242 HIS A 244 MET A 314 HOH A 360 SITE 1 AC3 5 HIS A 235 HIS A 305 AZI A 361 GOL A 362 SITE 2 AC3 5 HOH A 363 SITE 1 AC4 8 HIS A 235 PRO A 280 ASP A 282 HIS A 305 SITE 2 AC4 8 CU A 359 GOL A 362 HOH A 389 HOH A 465 SITE 1 AC5 9 HIS A 235 ASP A 282 HIS A 305 ASP A 312 SITE 2 AC5 9 CU A 359 AZI A 361 HOH A 363 HOH A 424 SITE 3 AC5 9 HOH A 433 SITE 1 AC6 9 LEU A 138 TYR A 139 THR A 148 LEU A 150 SITE 2 AC6 9 MET A 320 HOH A 398 HOH A 406 HOH A 409 SITE 3 AC6 9 HOH A 415 SITE 1 AC7 10 GLY A 113 ASN A 136 LEU A 138 PHE A 156 SITE 2 AC7 10 ARG A 157 GLY A 163 SER A 164 SER A 330 SITE 3 AC7 10 HOH A 364 HOH A 376 SITE 1 AC8 9 TYR A 205 GLN A 228 TYR A 229 LYS A 230 SITE 2 AC8 9 MET A 231 MET A 332 THR A 333 HOH A 562 SITE 3 AC8 9 HOH A 591 CRYST1 68.400 68.660 81.380 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014620 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012288 0.00000