HEADER TRANSCRIPTION/DNA 18-DEC-02 1NH2 TITLE CRYSTAL STRUCTURE OF A YEAST TFIIA/TBP/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU) COMPND 3 P*AP*AP*AP*AP*C)-3'; COMPND 4 CHAIN: E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3'; COMPND 8 CHAIN: F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID; COMPND 12 CHAIN: A; COMPND 13 FRAGMENT: C-TERMINAL 180 RESIDUES; COMPND 14 SYNONYM: YTBP, TATA-BOX FACTOR, TATA SEQUENCE-BINDING PROTEIN, TBP, COMPND 15 TRANSCRIPTION FACTOR D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA LARGE CHAIN; COMPND 19 CHAIN: B; COMPND 20 FRAGMENT: N-TERMINAL 54 RESIDUES; COMPND 21 SYNONYM: TFIIA 32 KDA SUBUNIT; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA LARGE CHAIN; COMPND 25 CHAIN: C; COMPND 26 FRAGMENT: C-TERMINAL 77 RESIDUES; COMPND 27 SYNONYM: TFIIA 32 KDA SUBUNIT; COMPND 28 ENGINEERED: YES; COMPND 29 MOL_ID: 6; COMPND 30 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA SMALL CHAIN; COMPND 31 CHAIN: D; COMPND 32 SYNONYM: TFIIA 13.5 KDA SUBUNIT; COMPND 33 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: SPT15 OR BTF1 OR YER148W; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 4932; SOURCE 16 GENE: TOA1 OR YOR194C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 5; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 21 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 22 ORGANISM_TAXID: 4932; SOURCE 23 GENE: TOA1 OR YOR194C; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 6; SOURCE 27 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 28 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 29 ORGANISM_TAXID: 4932; SOURCE 30 GENE: TOA2 OR YKL058W; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION/DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.BLEICHENBACHER,S.TAN,T.J.RICHMOND REVDAT 3 21-DEC-22 1NH2 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1NH2 1 VERSN REVDAT 1 21-OCT-03 1NH2 0 JRNL AUTH M.BLEICHENBACHER,S.TAN,T.J.RICHMOND JRNL TITL NOVEL INTERACTIONS BETWEEN THE COMPONENTS OF HUMAN AND YEAST JRNL TITL 2 TFIIA/TBP/DNA COMPLEXES. JRNL REF J.MOL.BIOL. V. 332 783 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12972251 JRNL DOI 10.1016/S0022-2836(03)00887-8 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 48353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM, EXPANDED FROM 1YTF REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4843 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5580 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 613 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3019 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.74000 REMARK 3 B22 (A**2) : -5.10000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.07 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.520 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.960 ; 3.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.46 REMARK 3 BSOL : 76.60 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000017863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 217906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.50850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.50850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.50500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 2 REMARK 465 THR B 49 REMARK 465 LYS B 50 REMARK 465 VAL B 51 REMARK 465 THR B 52 REMARK 465 THR B 53 REMARK 465 PHE B 54 REMARK 465 GLY C 208 REMARK 465 SER C 209 REMARK 465 SER C 210 REMARK 465 ALA C 211 REMARK 465 LEU C 212 REMARK 465 LEU C 213 REMARK 465 ASP C 214 REMARK 465 THR C 215 REMARK 465 ASP C 216 REMARK 465 GLU C 217 REMARK 465 VAL C 218 REMARK 465 GLY C 219 REMARK 465 SER C 220 REMARK 465 GLU C 221 REMARK 465 LEU C 222 REMARK 465 ASP C 223 REMARK 465 ASP C 224 REMARK 465 SER C 225 REMARK 465 ASP C 226 REMARK 465 ASP C 227 REMARK 465 SER C 232 REMARK 465 GLU C 233 REMARK 465 GLY C 234 REMARK 465 GLU C 235 REMARK 465 GLU C 236 REMARK 465 ASP C 237 REMARK 465 GLY C 238 REMARK 465 PRO C 239 REMARK 465 ASP C 240 REMARK 465 ALA D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 4 REMARK 465 SER D 90 REMARK 465 HIS D 91 REMARK 465 ARG D 92 REMARK 465 ASP D 93 REMARK 465 ALA D 94 REMARK 465 SER D 95 REMARK 465 GLN D 96 REMARK 465 ASN D 97 REMARK 465 GLY D 98 REMARK 465 SER D 99 REMARK 465 GLY D 100 REMARK 465 ASP D 101 REMARK 465 SER D 102 REMARK 465 GLU D 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP D 89 CG OD1 OD2 REMARK 470 LYS D 120 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 6 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT F 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 31 132.29 146.58 REMARK 500 CYS C 246 -165.82 -163.84 REMARK 500 LYS C 255 -121.74 56.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA F 14 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1NH2 A 61 240 UNP P13393 TBP_YEAST 60 239 DBREF 1NH2 B 2 54 UNP P32773 TOA1_YEAST 2 54 DBREF 1NH2 C 210 286 UNP P32774 TOA2_YEAST 210 286 DBREF 1NH2 D 2 122 UNP P32773 TOA1_YEAST 2 122 DBREF 1NH2 E 1 16 PDB 1NH2 1NH2 1 16 DBREF 1NH2 F 1 16 PDB 1NH2 1NH2 1 16 SEQADV 1NH2 GLY C 208 UNP P32774 CLONING ARTIFACT SEQADV 1NH2 SER C 209 UNP P32774 CLONING ARTIFACT SEQRES 1 E 16 DT DG DT DA 5IU DG DT DA DT DA 5IU DA DA SEQRES 2 E 16 DA DA DC SEQRES 1 F 16 DG DT DT DT DT DA DT DA DT DA DC DA DT SEQRES 2 F 16 DA DC DA SEQRES 1 A 180 SER GLY ILE VAL PRO THR LEU GLN ASN ILE VAL ALA THR SEQRES 2 A 180 VAL THR LEU GLY CYS ARG LEU ASP LEU LYS THR VAL ALA SEQRES 3 A 180 LEU HIS ALA ARG ASN ALA GLU TYR ASN PRO LYS ARG PHE SEQRES 4 A 180 ALA ALA VAL ILE MET ARG ILE ARG GLU PRO LYS THR THR SEQRES 5 A 180 ALA LEU ILE PHE ALA SER GLY LYS MET VAL VAL THR GLY SEQRES 6 A 180 ALA LYS SER GLU ASP ASP SER LYS LEU ALA SER ARG LYS SEQRES 7 A 180 TYR ALA ARG ILE ILE GLN LYS ILE GLY PHE ALA ALA LYS SEQRES 8 A 180 PHE THR ASP PHE LYS ILE GLN ASN ILE VAL GLY SER CYS SEQRES 9 A 180 ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU ALA PHE SEQRES 10 A 180 SER HIS GLY THR PHE SER SER TYR GLU PRO GLU LEU PHE SEQRES 11 A 180 PRO GLY LEU ILE TYR ARG MET VAL LYS PRO LYS ILE VAL SEQRES 12 A 180 LEU LEU ILE PHE VAL SER GLY LYS ILE VAL LEU THR GLY SEQRES 13 A 180 ALA LYS GLN ARG GLU GLU ILE TYR GLN ALA PHE GLU ALA SEQRES 14 A 180 ILE TYR PRO VAL LEU SER GLU PHE ARG LYS MET SEQRES 1 B 53 SER ASN ALA GLU ALA SER ARG VAL TYR GLU ILE ILE VAL SEQRES 2 B 53 GLU SER VAL VAL ASN GLU VAL ARG GLU ASP PHE GLU ASN SEQRES 3 B 53 ALA GLY ILE ASP GLU GLN THR LEU GLN ASP LEU LYS ASN SEQRES 4 B 53 ILE TRP GLN LYS LYS LEU THR GLU THR LYS VAL THR THR SEQRES 5 B 53 PHE SEQRES 1 C 79 GLY SER SER ALA LEU LEU ASP THR ASP GLU VAL GLY SER SEQRES 2 C 79 GLU LEU ASP ASP SER ASP ASP ASP TYR LEU ILE SER GLU SEQRES 3 C 79 GLY GLU GLU ASP GLY PRO ASP GLU ASN LEU MET LEU CYS SEQRES 4 C 79 LEU TYR ASP LYS VAL THR ARG THR LYS ALA ARG TRP LYS SEQRES 5 C 79 CYS SER LEU LYS ASP GLY VAL VAL THR ILE ASN ARG ASN SEQRES 6 C 79 ASP TYR THR PHE GLN LYS ALA GLN VAL GLU ALA GLU TRP SEQRES 7 C 79 VAL SEQRES 1 D 121 ALA VAL PRO GLY TYR TYR GLU LEU TYR ARG ARG SER THR SEQRES 2 D 121 ILE GLY ASN SER LEU VAL ASP ALA LEU ASP THR LEU ILE SEQRES 3 D 121 SER ASP GLY ARG ILE GLU ALA SER LEU ALA MET ARG VAL SEQRES 4 D 121 LEU GLU THR PHE ASP LYS VAL VAL ALA GLU THR LEU LYS SEQRES 5 D 121 ASP ASN THR GLN SER LYS LEU THR VAL LYS GLY ASN LEU SEQRES 6 D 121 ASP THR TYR GLY PHE CYS ASP ASP VAL TRP THR PHE ILE SEQRES 7 D 121 VAL LYS ASN CYS GLN VAL THR VAL GLU ASP SER HIS ARG SEQRES 8 D 121 ASP ALA SER GLN ASN GLY SER GLY ASP SER GLN SER VAL SEQRES 9 D 121 ILE SER VAL ASP LYS LEU ARG ILE VAL ALA CYS ASN SER SEQRES 10 D 121 LYS LYS SER GLU MODRES 1NH2 5IU E 5 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 1NH2 5IU E 11 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU E 5 20 HET 5IU E 11 20 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 1 5IU 2(C9 H12 I N2 O8 P) FORMUL 7 HOH *477(H2 O) HELIX 1 1 ASP A 81 ALA A 89 1 9 HELIX 2 2 SER A 128 GLY A 147 1 20 HELIX 3 3 ARG A 171 HIS A 179 1 9 HELIX 4 4 GLN A 219 PHE A 237 1 19 HELIX 5 5 ASN B 3 VAL B 21 1 19 HELIX 6 6 VAL B 21 ALA B 28 1 8 HELIX 7 7 ASP B 31 GLU B 48 1 18 HELIX 8 8 GLU D 8 ARG D 12 5 5 HELIX 9 9 SER D 13 ASP D 29 1 17 HELIX 10 10 GLU D 33 ASN D 55 1 23 SHEET 1 A17 SER A 183 SER A 184 0 SHEET 2 A17 LEU A 193 MET A 197 -1 N ILE A 194 O SER A 184 SHEET 3 A17 ILE A 202 ILE A 206 -1 O ILE A 202 N MET A 197 SHEET 4 A17 LYS A 211 ALA A 217 -1 O VAL A 213 N LEU A 205 SHEET 5 A17 THR A 153 ASP A 165 -1 O ILE A 160 N ALA A 217 SHEET 6 A17 THR A 66 THR A 75 -1 N THR A 66 O SER A 163 SHEET 7 A17 LYS A 120 ALA A 126 -1 N MET A 121 O VAL A 74 SHEET 8 A17 THR A 111 ILE A 115 -1 O THR A 112 N THR A 124 SHEET 9 A17 VAL A 102 ILE A 106 -1 O VAL A 102 N ILE A 115 SHEET 10 A17 ALA A 92 TYR A 94 -1 N GLU A 93 O ILE A 103 SHEET 11 A17 LYS D 59 CYS D 72 1 O TYR D 69 N ALA A 92 SHEET 12 A17 VAL D 75 GLU D 88 -1 O VAL D 75 N CYS D 72 SHEET 13 A17 SER D 104 ASN D 117 -1 O SER D 104 N VAL D 87 SHEET 14 A17 LEU C 243 THR C 254 1 N MET C 244 O ARG D 112 SHEET 15 A17 ARG C 257 ILE C 269 -1 N ARG C 257 O THR C 254 SHEET 16 A17 ASN C 272 GLU C 284 -1 O ASN C 272 N ILE C 269 SHEET 17 A17 LYS D 59 CYS D 72 1 N LEU D 60 O LYS C 278 LINK O3' DA E 4 P 5IU E 5 1555 1555 1.61 LINK O3' 5IU E 5 P DG E 6 1555 1555 1.61 LINK O3' DA E 10 P 5IU E 11 1555 1555 1.61 LINK O3' 5IU E 11 P DA E 12 1555 1555 1.60 CISPEP 1 GLU A 108 PRO A 109 0 -0.15 CISPEP 2 LYS A 199 PRO A 200 0 -0.27 CRYST1 59.010 92.020 117.017 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008546 0.00000