HEADER LYASE 03-DEC-02 1NBU TITLE 7,8-DIHYDRONEOPTERIN ALDOLASE COMPLEXED WITH PRODUCT FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DIHYDRONEOPTERIN ALDOLASE; COMPND 3 CHAIN: A, E, F, G, H; COMPND 4 SYNONYM: DHNA; COMPND 5 EC: 4.1.2.25; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROBABLE DIHYDRONEOPTERIN ALDOLASE; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: DHNA; COMPND 11 EC: 4.1.2.25; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PROBABLE DIHYDRONEOPTERIN ALDOLASE; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: DHNA; COMPND 18 EC: 4.1.2.25; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: FOLB OR RV3607C OR MT3712.1 OR MTCY07H7B.15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 12 ORGANISM_TAXID: 1773; SOURCE 13 GENE: FOLB OR RV3607C OR MT3712.1 OR MTCY07H7B.15; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 18 ORGANISM_TAXID: 1773; SOURCE 19 GENE: FOLB OR RV3607C OR MT3712.1 OR MTCY07H7B.15; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-PARALLEL, BETA-SHEET, TWO ALPHA HELICES, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.GOULDING,M.I.APOSTOL,M.R.SAWAYA,M.PHILLIPS,A.PARSEGHIAN, AUTHOR 2 D.EISENBERG,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 6 27-OCT-21 1NBU 1 REMARK SEQADV REVDAT 5 24-FEB-09 1NBU 1 VERSN REVDAT 4 02-AUG-05 1NBU 1 JRNL REVDAT 3 01-FEB-05 1NBU 1 AUTHOR KEYWDS REMARK REVDAT 2 27-JUL-04 1NBU 1 TITLE REVDAT 1 13-JAN-04 1NBU 0 JRNL AUTH C.W.GOULDING,M.I.APOSTOL,M.R.SAWAYA,M.PHILLIPS,A.PARSEGHIAN, JRNL AUTH 2 D.EISENBERG JRNL TITL REGULATION BY OLIGOMERIZATION IN A MYCOBACTERIAL FOLATE JRNL TITL 2 BIOSYNTHETIC ENZYME. JRNL REF J.MOL.BIOL. V. 349 61 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15876368 JRNL DOI 10.1016/J.JMB.2005.03.023 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.177 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.177 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4817 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 111758 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.166 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 91628 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7376 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 7947.2 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 71829 REMARK 3 NUMBER OF RESTRAINTS : 90056 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 ANGLE DISTANCES (A) : 0.029 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.026 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.036 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.047 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.100 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.002 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.059 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.070 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF), AUTHOR STATES REMARK 3 ARG23 OF CHAIN A, ARG23 OF CHAIN B, ARG15 OF CHAIN C, REMARK 3 ARG15 OF CHAIN E, ARG23 OF CHAIN E AND ARG23 OF CHAIN F ALL HAVE REMARK 3 TWO DISTINCT CONFORMATIONS. REMARK 4 REMARK 4 1NBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 1DHN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.57500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 465 MET G 1 REMARK 465 MET H 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 19 NH1 ARG E 23 2656 1.39 REMARK 500 OH TYR D 19 NH2 ARG G 23 2555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 23 CG ARG A 23 CD 0.889 REMARK 500 ARG E 23 CG ARG E 23 CD 0.894 REMARK 500 ARG G 60 CB ARG G 60 CG 0.880 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 CG - CD - NE ANGL. DEV. = -17.9 DEGREES REMARK 500 TYR A 54 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 54 CG - CD1 - CE1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 4 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 8 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR B 54 CB - CG - CD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 TYR B 54 CG - CD1 - CE1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 117 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 119 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 119 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 15 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 117 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG C 119 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 8 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ALA D 20 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 ALA D 20 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 ALA D 20 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ARG D 28 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG D 28 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR D 54 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR D 54 CG - CD1 - CE1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG D 56 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG D 60 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 119 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 119 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG E 23 CG - CD - NE ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG E 70 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG E 117 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG E 117 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP F 20 C - N - CA ANGL. DEV. = 26.7 DEGREES REMARK 500 ASP F 20 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 TYR F 54 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR F 54 CG - CD1 - CE1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG F 60 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG G 8 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG G 15 NE - CZ - NH1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG G 15 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP G 20 C - N - CA ANGL. DEV. = 24.1 DEGREES REMARK 500 ARG G 60 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG G 70 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG G 119 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG G 119 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG G 119 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG H 4 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP H 20 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG H 23 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 TYR H 54 CB - CG - CD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 2 ASP B 3 149.03 REMARK 500 TYR D 19 ALA D 20 -143.82 REMARK 500 TYR E 19 ASP E 20 -137.58 REMARK 500 TYR H 19 ASP H 20 -143.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 C 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 D 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 B 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 G 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 H 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 F 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PH2 E 820 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV3607C RELATED DB: TARGETDB DBREF 1NBU A 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU E 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU F 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU G 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU H 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU B 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU D 1 119 UNP P0A580 FOLB_MYCTU 1 119 DBREF 1NBU C 1 119 UNP P0A580 FOLB_MYCTU 1 119 SEQADV 1NBU ALA B 20 UNP P0A580 ASP 20 ENGINEERED MUTATION SEQADV 1NBU ALA D 20 UNP P0A580 ASP 20 ENGINEERED MUTATION SEQADV 1NBU ALA C 19 UNP P0A580 TYR 19 ENGINEERED MUTATION SEQADV 1NBU ALA C 20 UNP P0A580 ASP 20 ENGINEERED MUTATION SEQRES 1 A 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 A 119 GLY ARG HIS GLY VAL TYR ASP HIS GLU ARG VAL ALA GLY SEQRES 3 A 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 A 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 A 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 A 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 A 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 A 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 A 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 A 119 SER ARG SEQRES 1 B 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 B 119 GLY ARG HIS GLY VAL TYR ALA HIS GLU ARG VAL ALA GLY SEQRES 3 B 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 B 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 B 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 B 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 B 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 B 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 B 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 B 119 SER ARG SEQRES 1 C 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 C 119 GLY ARG HIS GLY VAL ALA ALA HIS GLU ARG VAL ALA GLY SEQRES 3 C 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 C 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 C 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 C 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 C 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 C 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 C 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 C 119 SER ARG SEQRES 1 D 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 D 119 GLY ARG HIS GLY VAL TYR ALA HIS GLU ARG VAL ALA GLY SEQRES 3 D 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 D 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 D 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 D 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 D 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 D 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 D 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 D 119 SER ARG SEQRES 1 E 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 E 119 GLY ARG HIS GLY VAL TYR ASP HIS GLU ARG VAL ALA GLY SEQRES 3 E 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 E 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 E 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 E 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 E 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 E 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 E 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 E 119 SER ARG SEQRES 1 F 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 F 119 GLY ARG HIS GLY VAL TYR ASP HIS GLU ARG VAL ALA GLY SEQRES 3 F 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 F 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 F 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 F 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 F 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 F 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 F 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 F 119 SER ARG SEQRES 1 G 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 G 119 GLY ARG HIS GLY VAL TYR ASP HIS GLU ARG VAL ALA GLY SEQRES 3 G 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 G 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 G 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 G 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 G 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 G 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 G 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 G 119 SER ARG SEQRES 1 H 119 MET ALA ASP ARG ILE GLU LEU ARG GLY LEU THR VAL HIS SEQRES 2 H 119 GLY ARG HIS GLY VAL TYR ASP HIS GLU ARG VAL ALA GLY SEQRES 3 H 119 GLN ARG PHE VAL ILE ASP VAL THR VAL TRP ILE ASP LEU SEQRES 4 H 119 ALA GLU ALA ALA ASN SER ASP ASP LEU ALA ASP THR TYR SEQRES 5 H 119 ASP TYR VAL ARG LEU ALA SER ARG ALA ALA GLU ILE VAL SEQRES 6 H 119 ALA GLY PRO PRO ARG LYS LEU ILE GLU THR VAL GLY ALA SEQRES 7 H 119 GLU ILE ALA ASP HIS VAL MET ASP ASP GLN ARG VAL HIS SEQRES 8 H 119 ALA VAL GLU VAL ALA VAL HIS LYS PRO GLN ALA PRO ILE SEQRES 9 H 119 PRO GLN THR PHE ASP ASP VAL ALA VAL VAL ILE ARG ARG SEQRES 10 H 119 SER ARG HET PH2 A 420 14 HET PH2 B 320 14 HET PH2 C 120 14 HET PH2 D 220 14 HET PH2 E 820 14 HET PH2 F 720 14 HET PH2 G 520 14 HET PH2 H 620 14 HETNAM PH2 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE FORMUL 9 PH2 8(C7 H9 N5 O2) FORMUL 17 HOH *470(H2 O) HELIX 1 1 HIS A 21 GLY A 26 1 6 HELIX 2 2 LEU A 39 ASP A 46 1 8 HELIX 3 3 ASP A 47 THR A 51 5 5 HELIX 4 4 ASP A 53 GLY A 67 1 15 HELIX 5 5 LEU A 72 ASP A 86 1 15 HELIX 6 6 TYR B 19 GLY B 26 1 8 HELIX 7 7 LEU B 39 ASP B 46 1 8 HELIX 8 8 ASP B 47 THR B 51 5 5 HELIX 9 9 ASP B 53 ALA B 66 1 14 HELIX 10 10 LEU B 72 ASP B 86 1 15 HELIX 11 11 ALA C 20 GLY C 26 1 7 HELIX 12 12 LEU C 39 ASP C 46 1 8 HELIX 13 13 ASP C 47 THR C 51 5 5 HELIX 14 14 ASP C 53 ALA C 66 1 14 HELIX 15 15 LEU C 72 ASP C 86 1 15 HELIX 16 16 ALA D 20 ALA D 25 1 6 HELIX 17 17 LEU D 39 ASP D 46 1 8 HELIX 18 18 ASP D 47 THR D 51 5 5 HELIX 19 19 ASP D 53 ALA D 66 1 14 HELIX 20 20 LEU D 72 ASP D 86 1 15 HELIX 21 21 ASP E 20 GLY E 26 1 7 HELIX 22 22 LEU E 39 ASP E 46 1 8 HELIX 23 23 ASP E 47 THR E 51 5 5 HELIX 24 24 ASP E 53 GLY E 67 1 15 HELIX 25 25 LEU E 72 ASP E 86 1 15 HELIX 26 26 TYR F 19 VAL F 24 5 6 HELIX 27 27 LEU F 39 ASP F 46 1 8 HELIX 28 28 ASP F 47 THR F 51 5 5 HELIX 29 29 ASP F 53 GLY F 67 1 15 HELIX 30 30 LEU F 72 ASP F 86 1 15 HELIX 31 31 ASP G 20 GLY G 26 1 7 HELIX 32 32 LEU G 39 ASP G 46 1 8 HELIX 33 33 ASP G 47 THR G 51 5 5 HELIX 34 34 ASP G 53 GLY G 67 1 15 HELIX 35 35 LEU G 72 ASP G 86 1 15 HELIX 36 36 TYR H 19 VAL H 24 5 6 HELIX 37 37 LEU H 39 ASP H 46 1 8 HELIX 38 38 ASP H 47 THR H 51 5 5 HELIX 39 39 ASP H 53 GLY H 67 1 15 HELIX 40 40 LEU H 72 ASP H 86 1 15 SHEET 1 A17 ARG A 4 GLY A 14 0 SHEET 2 A17 GLN A 27 TRP A 36 -1 O GLN A 27 N GLY A 14 SHEET 3 A17 ALA A 92 HIS A 98 -1 O HIS A 98 N VAL A 30 SHEET 4 A17 ASP A 110 SER A 118 -1 O ARG A 117 N VAL A 93 SHEET 5 A17 ARG D 4 GLY D 14 -1 O ARG D 8 N ASP A 110 SHEET 6 A17 GLN D 27 TRP D 36 -1 O ILE D 31 N LEU D 10 SHEET 7 A17 ALA D 92 HIS D 98 -1 O HIS D 98 N VAL D 30 SHEET 8 A17 ASP D 110 SER D 118 -1 O ILE D 115 N VAL D 95 SHEET 9 A17 ARG B 4 GLY B 14 -1 N ARG B 4 O VAL D 114 SHEET 10 A17 GLN B 27 TRP B 36 -1 O VAL B 33 N LEU B 7 SHEET 11 A17 ALA B 92 HIS B 98 -1 O HIS B 98 N VAL B 30 SHEET 12 A17 ASP B 110 SER B 118 -1 O VAL B 113 N VAL B 97 SHEET 13 A17 ARG C 4 GLY C 14 -1 O ARG C 8 N ASP B 110 SHEET 14 A17 GLN C 27 TRP C 36 -1 O VAL C 33 N LEU C 7 SHEET 15 A17 ALA C 92 HIS C 98 -1 O HIS C 98 N VAL C 30 SHEET 16 A17 ASP C 110 SER C 118 -1 O VAL C 113 N VAL C 97 SHEET 17 A17 ARG A 4 GLY A 14 -1 N GLU A 6 O ALA C 112 SHEET 1 B17 ARG E 4 GLY E 14 0 SHEET 2 B17 GLN E 27 ILE E 37 -1 O VAL E 33 N LEU E 7 SHEET 3 B17 VAL E 90 HIS E 98 -1 O HIS E 98 N VAL E 30 SHEET 4 B17 ASP E 110 SER E 118 -1 O ILE E 115 N VAL E 95 SHEET 5 B17 ARG H 4 GLY H 14 -1 O ARG H 4 N VAL E 114 SHEET 6 B17 GLN H 27 TRP H 36 -1 O ILE H 31 N LEU H 10 SHEET 7 B17 ALA H 92 HIS H 98 -1 O HIS H 98 N VAL H 30 SHEET 8 B17 ASP H 110 SER H 118 -1 O ILE H 115 N VAL H 95 SHEET 9 B17 ARG F 4 GLY F 14 -1 N ARG F 4 O VAL H 114 SHEET 10 B17 GLN F 27 TRP F 36 -1 O VAL F 33 N LEU F 7 SHEET 11 B17 ALA F 92 HIS F 98 -1 O HIS F 98 N VAL F 30 SHEET 12 B17 ASP F 110 SER F 118 -1 O VAL F 113 N VAL F 97 SHEET 13 B17 ARG G 4 GLY G 14 -1 O GLU G 6 N ALA F 112 SHEET 14 B17 GLN G 27 ILE G 37 -1 O VAL G 33 N LEU G 7 SHEET 15 B17 VAL G 90 HIS G 98 -1 O HIS G 98 N VAL G 30 SHEET 16 B17 ASP G 110 SER G 118 -1 O VAL G 113 N VAL G 97 SHEET 17 B17 ARG E 4 GLY E 14 -1 N ARG E 8 O ASP G 110 SITE 1 AC1 13 THR A 51 TYR A 52 ASP A 53 TYR A 54 SITE 2 AC1 13 VAL A 55 GLY C 17 VAL C 18 GLU C 22 SITE 3 AC1 13 LEU C 72 ILE C 73 GLU C 74 LYS C 99 SITE 4 AC1 13 HOH C9166 SITE 1 AC2 14 LEU B 48 THR B 51 TYR B 52 ASP B 53 SITE 2 AC2 14 TYR B 54 VAL B 55 GLY D 17 VAL D 18 SITE 3 AC2 14 GLU D 22 LEU D 72 ILE D 73 GLU D 74 SITE 4 AC2 14 LYS D 99 HOH D9116 SITE 1 AC3 13 GLY B 17 VAL B 18 GLU B 22 LEU B 72 SITE 2 AC3 13 ILE B 73 GLU B 74 LYS B 99 HOH B9023 SITE 3 AC3 13 THR C 51 TYR C 52 ASP C 53 TYR C 54 SITE 4 AC3 13 VAL C 55 SITE 1 AC4 14 GLY A 17 VAL A 18 GLU A 22 LEU A 72 SITE 2 AC4 14 ILE A 73 GLU A 74 LYS A 99 HOH A9140 SITE 3 AC4 14 LEU D 48 THR D 51 TYR D 52 ASP D 53 SITE 4 AC4 14 TYR D 54 VAL D 55 SITE 1 AC5 14 LEU E 48 THR E 51 TYR E 52 ASP E 53 SITE 2 AC5 14 TYR E 54 VAL E 55 GLY G 17 VAL G 18 SITE 3 AC5 14 GLU G 22 LEU G 72 ILE G 73 GLU G 74 SITE 4 AC5 14 LYS G 99 HOH G9047 SITE 1 AC6 15 LEU F 48 THR F 51 TYR F 52 ASP F 53 SITE 2 AC6 15 TYR F 54 VAL F 55 HOH F9340 GLY H 17 SITE 3 AC6 15 VAL H 18 GLU H 22 LEU H 72 ILE H 73 SITE 4 AC6 15 GLU H 74 LYS H 99 HOH H9005 SITE 1 AC7 14 GLY F 17 VAL F 18 GLU F 22 LEU F 72 SITE 2 AC7 14 ILE F 73 GLU F 74 LYS F 99 HOH F9017 SITE 3 AC7 14 LEU G 48 THR G 51 TYR G 52 ASP G 53 SITE 4 AC7 14 TYR G 54 VAL G 55 SITE 1 AC8 14 GLY E 17 VAL E 18 GLU E 22 LEU E 72 SITE 2 AC8 14 ILE E 73 GLU E 74 LYS E 99 HOH E9003 SITE 3 AC8 14 LEU H 48 THR H 51 TYR H 52 ASP H 53 SITE 4 AC8 14 TYR H 54 VAL H 55 CRYST1 78.560 85.150 74.790 90.00 112.69 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012729 0.000000 0.005322 0.00000 SCALE2 0.000000 0.011744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014492 0.00000