HEADER HYDROLASE(ENDORIBONUCLEASE) 06-MAR-91 1HRH TITLE CRYSTAL STRUCTURE OF THE RIBONUCLEASE H DOMAIN OF HIV-1 REVERSE TITLE 2 TRANSCRIPTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE H; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676 KEYWDS HYDROLASE(ENDORIBONUCLEASE) EXPDTA X-RAY DIFFRACTION AUTHOR J.F.DAVIES /II,D.A.MATTHEWS REVDAT 5 29-NOV-17 1HRH 1 HELIX REVDAT 4 24-FEB-09 1HRH 1 VERSN REVDAT 3 01-APR-03 1HRH 1 JRNL REVDAT 2 15-OCT-94 1HRH 1 REMARK REVDAT 1 15-JAN-92 1HRH 0 JRNL AUTH J.F.DAVIES 2ND.,Z.HOSTOMSKA,Z.HOSTOMSKY,S.R.JORDAN, JRNL AUTH 2 D.A.MATTHEWS JRNL TITL CRYSTAL STRUCTURE OF THE RIBONUCLEASE H DOMAIN OF HIV-1 JRNL TITL 2 REVERSE TRANSCRIPTASE. JRNL REF SCIENCE V. 252 88 1991 JRNL REFN ISSN 0036-8075 JRNL PMID 1707186 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.HOSTOMSKA,D.A.MATTHEWS,J.F.DAVIES /II,B.R.NODES, REMARK 1 AUTH 2 Z.HOSTOMSKY REMARK 1 TITL PROTEOLYTIC RELEASE AND CRYSTALLIZATION OF THE RNASE H REMARK 1 TITL 2 DOMAIN OF HUMAN IMMUNODEFICIENCY VIRUS TYPE I REVERSE REMARK 1 TITL 3 TRANSCRIPTASE REMARK 1 REF J.BIOL.CHEM. V. 266 14697 1991 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.051 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1HRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN REMARK 300 APPLIED TO CHAIN *B*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 538 REMARK 465 HIS A 539 REMARK 465 LYS A 540 REMARK 465 GLY A 541 REMARK 465 ILE A 542 REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 ILE A 559 REMARK 465 LEU A 560 REMARK 465 PHE A 561 REMARK 465 LEU A 562 REMARK 465 ALA B 538 REMARK 465 HIS B 539 REMARK 465 LYS B 540 REMARK 465 GLY B 541 REMARK 465 ILE B 542 REMARK 465 GLY B 543 REMARK 465 GLY B 555 REMARK 465 ILE B 556 REMARK 465 ARG B 557 REMARK 465 LYS B 558 REMARK 465 ILE B 559 REMARK 465 LEU B 560 REMARK 465 PHE B 561 REMARK 465 LEU B 562 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 428 CG CD OE1 NE2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 ASN A 471 CG OD1 ND2 REMARK 470 ASN A 474 CG OD1 ND2 REMARK 470 ASP A 511 CG OD1 OD2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 GLN B 428 CG CD OE1 NE2 REMARK 470 LYS B 431 CG CD CE NZ REMARK 470 GLU B 432 CG CD OE1 OE2 REMARK 470 ARG B 448 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 449 CG CD OE1 OE2 REMARK 470 THR B 450 OG1 CG2 REMARK 470 LYS B 451 CG CD CE NZ REMARK 470 LYS B 476 CG CD CE NZ REMARK 470 ASP B 511 CG OD1 OD2 REMARK 470 LYS B 512 CG CD CE NZ REMARK 470 GLU B 514 CG CD OE1 OE2 REMARK 470 GLU B 516 CG CD OE1 OE2 REMARK 470 GLU B 523 CG CD OE1 OE2 REMARK 470 ILE B 526 CG1 CG2 CD1 REMARK 470 LYS B 527 CG CD CE NZ REMARK 470 GLU B 546 CG CD OE1 OE2 REMARK 470 GLN B 547 CG CD OE1 NE2 REMARK 470 LYS B 550 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 489 CB SER A 489 OG 0.078 REMARK 500 GLY A 490 N GLY A 490 CA 0.139 REMARK 500 SER B 489 C SER B 489 O 0.114 REMARK 500 GLY B 490 N GLY B 490 CA 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 463 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 463 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLN A 464 N - CA - CB ANGL. DEV. = 17.2 DEGREES REMARK 500 PRO A 468 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 SER A 489 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 GLY A 490 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 VAL A 493 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 THR A 497 CB - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 THR A 497 CA - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 498 CB - CG - OD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP A 498 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 549 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 GLU B 438 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 VAL B 442 N - CA - CB ANGL. DEV. = -17.9 DEGREES REMARK 500 VAL B 442 CG1 - CB - CG2 ANGL. DEV. = 13.3 DEGREES REMARK 500 GLY B 456 C - N - CA ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG B 463 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLN B 475 CB - CG - CD ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU B 479 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU B 479 CA - C - O ANGL. DEV. = 14.2 DEGREES REMARK 500 SER B 489 N - CA - C ANGL. DEV. = 23.4 DEGREES REMARK 500 SER B 489 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 GLY B 490 C - N - CA ANGL. DEV. = -12.9 DEGREES REMARK 500 VAL B 493 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 THR B 497 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 TYR B 501 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR B 501 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 LYS B 528 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS B 530 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 LEU B 533 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 ASN B 545 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 471 66.47 65.17 REMARK 500 ASP A 511 -61.21 -91.73 REMARK 500 LYS B 465 136.65 -170.02 REMARK 500 ASN B 471 77.38 46.82 REMARK 500 GLN B 509 60.35 64.08 REMARK 500 SER B 553 45.36 -90.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 463 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1HRH A 427 562 UNP P03366 POL_HV1B1 594 729 DBREF 1HRH B 427 562 UNP P03366 POL_HV1B1 594 729 SEQRES 1 A 136 TYR GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR SEQRES 2 A 136 PHE TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU SEQRES 3 A 136 GLY LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS SEQRES 4 A 136 VAL VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU SEQRES 5 A 136 LEU GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU SEQRES 6 A 136 GLU VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY SEQRES 7 A 136 ILE ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU SEQRES 8 A 136 VAL ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS SEQRES 9 A 136 VAL TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY SEQRES 10 A 136 GLY ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE SEQRES 11 A 136 ARG LYS ILE LEU PHE LEU SEQRES 1 B 136 TYR GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR SEQRES 2 B 136 PHE TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU SEQRES 3 B 136 GLY LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS SEQRES 4 B 136 VAL VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU SEQRES 5 B 136 LEU GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU SEQRES 6 B 136 GLU VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY SEQRES 7 B 136 ILE ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU SEQRES 8 B 136 VAL ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS SEQRES 9 B 136 VAL TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY SEQRES 10 B 136 GLY ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE SEQRES 11 B 136 ARG LYS ILE LEU PHE LEU HELIX 1 AA THR A 473 ASP A 488 1 16 HELIX 2 BA SER A 499 GLN A 509 1 11 HELIX 3 DA SER A 515 LYS A 528 1 14 HELIX 4 EA GLY A 543 SER A 553 1 11 HELIX 5 AB THR B 473 ASP B 488 1 16 HELIX 6 BB SER B 499 GLN B 509 1 11 HELIX 7 DB SER B 515 LYS B 528 1 14 SHEET 1 IA 5 ARG A 463 LEU A 469 0 SHEET 2 IA 5 LEU A 452 THR A 459 -1 N TYR A 457 O LYS A 465 SHEET 3 IA 5 GLU A 438 ASN A 447 -1 N ASP A 443 O GLY A 456 SHEET 4 IA 5 LEU A 491 THR A 497 1 N VAL A 496 O PHE A 440 SHEET 5 IA 5 LYS A 530 VAL A 536 1 N ALA A 534 O ILE A 495 SHEET 1 IB 5 ARG B 463 LEU B 469 0 SHEET 2 IB 5 LEU B 452 THR B 459 -1 N TYR B 457 O LYS B 465 SHEET 3 IB 5 GLU B 438 ASN B 447 -1 N ASP B 443 O GLY B 456 SHEET 4 IB 5 LEU B 491 THR B 497 1 N VAL B 496 O PHE B 440 SHEET 5 IB 5 LYS B 530 VAL B 536 1 N ALA B 534 O ILE B 495 CRYST1 51.900 51.900 114.900 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.577350 0.000000 0.00000 ORIGX2 0.000000 1.154701 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019268 0.011124 0.000000 0.00000 SCALE2 0.000000 0.022249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008703 0.00000 MTRIX1 1 0.369800 -0.787610 0.492860 2.01380 1 MTRIX2 1 -0.787990 -0.546920 -0.282750 58.75750 1 MTRIX3 1 0.492250 -0.283810 -0.822880 88.19490 1